Wall clock time and date at job start Tue Mar 31 2020 06:34:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.52992 * 109.47482 * 120.00154 * 2 1 3 5 5 C 1.50700 * 109.47798 * 185.00026 * 4 2 1 6 6 H 1.08007 * 119.99653 * 359.97438 * 5 4 2 7 7 C 1.37870 * 120.00569 * 179.97438 * 5 4 2 8 8 N 1.31517 * 120.00211 * 179.97438 * 7 5 4 9 9 Si 1.86802 * 120.00049 * 0.02562 * 7 5 4 10 10 H 1.48492 * 109.47440 * 89.99537 * 9 7 5 11 11 H 1.48504 * 109.47039 * 209.99968 * 9 7 5 12 12 H 1.48502 * 109.46671 * 329.99509 * 9 7 5 13 13 N 1.46906 * 109.47302 * 240.00536 * 2 1 3 14 14 C 1.46897 * 111.00172 * 84.99810 * 13 2 1 15 15 H 1.09007 * 109.47246 * 324.99979 * 14 13 2 16 16 C 1.52998 * 109.47337 * 85.00007 * 14 13 2 17 17 C 1.50702 * 109.46934 * 205.00539 * 14 13 2 18 18 C 1.39372 * 119.50561 * 319.99347 * 17 14 13 19 19 C 1.36091 * 120.99168 * 180.02562 * 18 17 14 20 20 C 1.40539 * 119.65547 * 359.97438 * 19 18 17 21 21 C 1.40542 * 121.29647 * 180.02562 * 20 19 18 22 22 C 1.36088 * 119.65804 * 179.97438 * 21 20 19 23 23 C 1.39382 * 120.98823 * 359.97438 * 22 21 20 24 24 C 1.36094 * 120.98634 * 0.02562 * 23 22 21 25 25 C 1.40535 * 119.65488 * 359.95831 * 24 23 22 26 26 C 1.36089 * 119.50546 * 139.73283 * 17 14 13 27 27 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 28 28 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 30 30 H 1.09001 * 109.47563 * 305.00337 * 4 2 1 31 31 H 1.09004 * 109.47313 * 64.99993 * 4 2 1 32 32 H 0.96996 * 119.99912 * 180.02562 * 8 7 5 33 33 H 1.00896 * 110.99793 * 208.95333 * 13 2 1 34 34 H 1.08999 * 109.46797 * 60.00097 * 16 14 13 35 35 H 1.09000 * 109.47103 * 179.97438 * 16 14 13 36 36 H 1.08993 * 109.47251 * 300.00449 * 16 14 13 37 37 H 1.08000 * 119.50659 * 0.02562 * 18 17 14 38 38 H 1.08000 * 120.17610 * 179.97438 * 19 18 17 39 39 H 1.07999 * 120.16408 * 359.95555 * 21 20 19 40 40 H 1.07990 * 119.50601 * 180.02562 * 22 21 20 41 41 H 1.07998 * 119.50282 * 179.97438 * 23 22 21 42 42 H 1.08003 * 120.16628 * 179.97438 * 24 23 22 43 43 H 1.08002 * 120.17477 * 359.96467 * 26 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2491 5 6 3.5419 -0.6149 1.3127 6 1 4.0791 -0.0861 0.5391 7 6 4.2304 -1.1926 2.3582 8 7 5.5412 -1.1003 2.4133 9 14 3.3016 -2.1078 3.6958 10 1 3.1709 -3.5379 3.3179 11 1 4.0449 -2.0002 4.9769 12 1 1.9505 -1.5127 3.8559 13 7 2.0197 -0.6924 -1.1995 14 6 2.0825 0.2227 -2.3469 15 1 1.2576 0.9331 -2.2907 16 6 3.4111 0.9811 -2.3224 17 6 1.9785 -0.5675 -3.6259 18 6 2.6425 -1.7881 -3.7346 19 6 2.5697 -2.5262 -4.8756 20 6 1.8143 -2.0538 -5.9624 21 6 1.7151 -2.7880 -7.1567 22 6 0.9740 -2.2993 -8.1881 23 6 0.3092 -1.0791 -8.0790 24 6 0.3824 -0.3408 -6.9380 25 6 1.1380 -0.8133 -5.8514 26 6 1.2335 -0.0810 -4.6556 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 -0.8900 30 1 1.6054 -0.2618 2.1369 31 1 1.7517 -1.7715 1.2055 32 1 6.0255 -1.5070 3.1487 33 1 2.9173 -1.1204 -1.0288 34 1 4.2359 0.2708 -2.3786 35 1 3.4578 1.6598 -3.1740 36 1 3.4862 1.5525 -1.3973 37 1 3.2234 -2.1537 -2.9007 38 1 3.0899 -3.4701 -4.9456 39 1 2.2248 -3.7351 -7.2554 40 1 0.8991 -2.8657 -9.1045 41 1 -0.2721 -0.7137 -8.9127 42 1 -0.1378 0.6031 -6.8681 43 1 0.7205 0.8641 -4.5554 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299733677.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:47 Heat of formation + Delta-G solvation = 25.817636 kcal Electronic energy + Delta-G solvation = -21534.446811 eV Core-core repulsion = 18543.322490 eV Total energy + Delta-G solvation = -2991.124321 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.163 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.34490 -37.91414 -35.99957 -33.40473 -32.58420 -31.92285 -29.63508 -29.01525 -27.99786 -27.44613 -23.86248 -23.20835 -22.63637 -21.86504 -20.58930 -19.43729 -17.19380 -16.81501 -16.76270 -16.15614 -14.98726 -14.81292 -14.63295 -14.23082 -13.89067 -13.58826 -13.45885 -13.29400 -12.86508 -12.74085 -12.68011 -12.26323 -12.10351 -11.89508 -11.72328 -11.53383 -11.25616 -11.09354 -10.97487 -10.81437 -10.66015 -10.48622 -10.27670 -9.88557 -9.82268 -9.48395 -9.23419 -8.57845 -8.39487 -7.84298 -7.68029 -6.09085 -4.07631 0.61596 1.10729 2.14237 3.08208 3.29806 3.37385 3.41342 4.19673 4.42491 4.57678 4.75631 4.83459 4.95398 5.07008 5.15436 5.23230 5.29457 5.38830 5.44482 5.51671 5.63167 5.66287 5.80534 5.82703 5.91694 6.02511 6.04777 6.13227 6.15315 6.27507 6.32512 6.34986 6.43378 6.46057 6.55452 6.68510 6.72065 6.79191 6.83723 6.88975 7.11563 7.19622 7.27395 7.73725 7.87589 8.18974 8.45949 8.92939 9.53971 11.03669 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.027030 B = 0.003573 C = 0.003441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.620084 B = 7834.003638 C = 8134.678565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.097 3.903 3 H 0.037 0.963 4 C -0.017 4.017 5 C -0.524 4.524 6 H 0.071 0.929 7 C 0.069 3.931 8 N -0.901 5.901 9 Si 0.880 3.120 10 H -0.277 1.277 11 H -0.290 1.290 12 H -0.266 1.266 13 N -0.676 5.676 14 C 0.117 3.883 15 H 0.079 0.921 16 C -0.175 4.175 17 C -0.043 4.043 18 C -0.084 4.084 19 C -0.115 4.115 20 C -0.056 4.056 21 C -0.104 4.104 22 C -0.127 4.127 23 C -0.125 4.125 24 C -0.107 4.107 25 C -0.048 4.048 26 C -0.116 4.116 27 H 0.048 0.952 28 H 0.054 0.946 29 H 0.039 0.961 30 H 0.021 0.979 31 H 0.021 0.979 32 H 0.263 0.737 33 H 0.359 0.641 34 H 0.060 0.940 35 H 0.052 0.948 36 H 0.065 0.935 37 H 0.128 0.872 38 H 0.124 0.876 39 H 0.123 0.877 40 H 0.118 0.882 41 H 0.118 0.882 42 H 0.123 0.877 43 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.161 0.380 -18.189 20.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.012 4.012 3 H 0.055 0.945 4 C -0.055 4.055 5 C -0.562 4.562 6 H 0.089 0.911 7 C -0.132 4.132 8 N -0.540 5.540 9 Si 0.708 3.292 10 H -0.203 1.203 11 H -0.216 1.216 12 H -0.190 1.190 13 N -0.310 5.310 14 C 0.007 3.993 15 H 0.097 0.903 16 C -0.234 4.234 17 C -0.044 4.044 18 C -0.102 4.102 19 C -0.133 4.133 20 C -0.056 4.056 21 C -0.122 4.122 22 C -0.145 4.145 23 C -0.143 4.143 24 C -0.125 4.125 25 C -0.048 4.048 26 C -0.135 4.135 27 H 0.067 0.933 28 H 0.073 0.927 29 H 0.059 0.941 30 H 0.039 0.961 31 H 0.039 0.961 32 H 0.073 0.927 33 H 0.181 0.819 34 H 0.080 0.920 35 H 0.071 0.929 36 H 0.084 0.916 37 H 0.146 0.854 38 H 0.142 0.858 39 H 0.141 0.859 40 H 0.136 0.864 41 H 0.136 0.864 42 H 0.141 0.859 43 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -9.614 0.075 -18.216 20.597 hybrid contribution 0.461 0.010 0.999 1.100 sum -9.152 0.085 -17.218 19.499 Atomic orbital electron populations 1.21845 0.96679 1.01402 0.99707 1.21390 0.93114 0.96217 0.90524 0.94481 1.19769 0.97053 0.95975 0.92680 1.21094 0.89843 1.35346 1.09879 0.91076 1.25001 0.94666 0.95709 0.97842 1.69914 1.06561 1.45215 1.32307 0.86768 0.80416 0.80589 0.81434 1.20259 1.21578 1.19048 1.60694 1.35104 1.31330 1.03881 1.20514 0.97168 0.92611 0.89025 0.90285 1.22456 0.97963 1.00953 1.01993 1.19682 0.95050 0.94763 0.94859 1.20802 0.98160 0.93854 0.97367 1.21007 0.99353 1.00036 0.92939 1.18096 0.98311 0.94519 0.94700 1.21020 0.99055 0.99391 0.92736 1.20766 0.98394 0.96508 0.98881 1.20772 1.00252 0.95305 0.97940 1.21002 0.98738 0.99753 0.92960 1.18034 0.97868 0.94438 0.94485 1.20805 1.00279 0.99862 0.92532 0.93329 0.92667 0.94145 0.96098 0.96102 0.92741 0.81904 0.92046 0.92930 0.91606 0.85381 0.85770 0.85893 0.86433 0.86429 0.85923 0.85976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.31 9.40 37.16 0.35 -1.96 16 2 C 0.10 1.87 2.40 -67.71 -0.16 1.71 16 3 H 0.04 0.74 7.11 -51.93 -0.37 0.37 16 4 C -0.02 -0.40 3.64 -27.89 -0.10 -0.50 16 5 C -0.52 -14.07 8.67 -34.44 -0.30 -14.37 16 6 H 0.07 2.03 7.73 -52.48 -0.41 1.62 16 7 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 8 N -0.90 -26.97 13.96 55.43 0.77 -26.19 16 9 Si 0.88 21.42 27.47 -169.99 -4.67 16.76 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 12 H -0.27 -6.26 6.54 56.52 0.37 -5.89 16 13 N -0.68 -12.26 5.50 -100.96 -0.56 -12.81 16 14 C 0.12 1.82 2.58 -68.87 -0.18 1.64 16 15 H 0.08 1.18 6.92 -51.93 -0.36 0.82 16 16 C -0.17 -2.71 9.12 37.16 0.34 -2.37 16 17 C -0.04 -0.63 4.92 -104.97 -0.52 -1.15 16 18 C -0.08 -1.23 9.21 -39.93 -0.37 -1.60 16 19 C -0.12 -1.54 9.77 -39.49 -0.39 -1.92 16 20 C -0.06 -0.74 5.74 -106.83 -0.61 -1.36 16 21 C -0.10 -1.16 9.77 -39.49 -0.39 -1.55 16 22 C -0.13 -1.27 9.95 -39.93 -0.40 -1.67 16 23 C -0.12 -1.24 9.95 -39.93 -0.40 -1.64 16 24 C -0.11 -1.19 9.77 -39.49 -0.39 -1.57 16 25 C -0.05 -0.64 5.74 -106.83 -0.61 -1.25 16 26 C -0.12 -1.56 9.36 -39.49 -0.37 -1.93 16 27 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.04 0.61 7.43 -51.93 -0.39 0.22 16 30 H 0.02 0.49 7.20 -51.93 -0.37 0.12 16 31 H 0.02 0.49 7.57 -51.93 -0.39 0.10 16 32 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 33 H 0.36 7.19 6.24 -39.29 -0.25 6.94 16 34 H 0.06 1.00 8.13 -51.93 -0.42 0.58 16 35 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.06 1.11 7.43 -51.93 -0.39 0.73 16 37 H 0.13 1.94 7.18 -52.49 -0.38 1.56 16 38 H 0.12 1.39 8.06 -52.49 -0.42 0.96 16 39 H 0.12 1.11 8.06 -52.49 -0.42 0.68 16 40 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 41 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 42 H 0.12 1.10 8.06 -52.48 -0.42 0.68 16 43 H 0.12 1.41 7.99 -52.49 -0.42 0.99 16 LS Contribution 347.10 15.07 5.23 5.23 Total: -1.00 -29.44 347.10 -10.49 -39.93 By element: Atomic # 1 Polarization: 13.40 SS G_CDS: -6.69 Total: 6.72 kcal Atomic # 6 Polarization: -25.05 SS G_CDS: -4.58 Total: -29.63 kcal Atomic # 7 Polarization: -39.22 SS G_CDS: 0.22 Total: -39.00 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -4.67 Total: 16.76 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -29.44 -10.49 -39.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299733677.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.750 kcal (2) G-P(sol) polarization free energy of solvation -29.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.933 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds