Wall clock time and date at job start Tue Mar 31 2020 06:34:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.47435 * 2 1 4 4 C 1.52999 * 109.47369 * 240.00062 * 2 1 3 5 5 C 1.50698 * 109.47240 * 175.00167 * 4 2 1 6 6 H 1.07997 * 119.99942 * 359.97438 * 5 4 2 7 7 C 1.37881 * 119.99962 * 179.72890 * 5 4 2 8 8 N 1.31518 * 120.00028 * 0.26714 * 7 5 4 9 9 Si 1.86792 * 120.00255 * 180.27453 * 7 5 4 10 10 H 1.48504 * 109.47340 * 89.99022 * 9 7 5 11 11 H 1.48495 * 109.47476 * 209.99534 * 9 7 5 12 12 H 1.48501 * 109.46930 * 329.99793 * 9 7 5 13 13 N 1.46904 * 109.47287 * 119.99711 * 2 1 3 14 14 C 1.46895 * 111.00102 * 277.28105 * 13 2 1 15 15 H 1.08995 * 109.47787 * 33.70601 * 14 13 2 16 16 C 1.53006 * 109.47311 * 153.70647 * 14 13 2 17 17 C 1.50707 * 109.47036 * 273.70422 * 14 13 2 18 18 C 1.39369 * 119.50437 * 320.00445 * 17 14 13 19 19 C 1.36095 * 120.98691 * 180.02562 * 18 17 14 20 20 C 1.40536 * 119.65430 * 359.97438 * 19 18 17 21 21 C 1.40545 * 121.28751 * 180.02562 * 20 19 18 22 22 C 1.36102 * 119.65190 * 179.97438 * 21 20 19 23 23 C 1.39376 * 120.98805 * 0.02562 * 22 21 20 24 24 C 1.36091 * 120.98871 * 0.02562 * 23 22 21 25 25 C 1.40534 * 119.65730 * 359.96058 * 24 23 22 26 26 C 1.36087 * 119.50432 * 139.73164 * 17 14 13 27 27 H 1.08999 * 109.47386 * 305.07602 * 1 2 3 28 28 H 1.08997 * 109.47367 * 65.07391 * 1 2 3 29 29 H 1.09002 * 109.47089 * 185.07533 * 1 2 3 30 30 H 1.08997 * 109.46835 * 55.00003 * 4 2 1 31 31 H 1.09000 * 109.46812 * 295.00166 * 4 2 1 32 32 H 0.96995 * 120.00529 * 180.02562 * 8 7 5 33 33 H 1.00900 * 110.99603 * 153.31978 * 13 2 1 34 34 H 1.09003 * 109.46873 * 55.15055 * 16 14 13 35 35 H 1.08995 * 109.47428 * 175.15036 * 16 14 13 36 36 H 1.09001 * 109.46915 * 295.15362 * 16 14 13 37 37 H 1.07995 * 119.50962 * 359.97438 * 18 17 14 38 38 H 1.08002 * 120.17140 * 179.97438 * 19 18 17 39 39 H 1.07995 * 120.17695 * 359.96126 * 21 20 19 40 40 H 1.07997 * 119.50422 * 180.02562 * 22 21 20 41 41 H 1.08004 * 119.50214 * 179.97438 * 23 22 21 42 42 H 1.07997 * 120.17400 * 179.97438 * 24 23 22 43 43 H 1.08006 * 120.17438 * 359.97285 * 26 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5419 -0.6149 -1.3126 6 1 4.0789 -0.0855 -0.5395 7 6 4.2309 -1.1979 -2.3550 8 7 3.5769 -1.8422 -3.2968 9 14 6.0931 -1.0727 -2.4296 10 1 6.6959 -2.2256 -1.7136 11 1 6.5337 -1.0854 -3.8477 12 1 6.5303 0.1925 -1.7867 13 7 2.0197 -0.6924 1.1995 14 6 2.0313 0.2085 2.3596 15 1 1.1983 0.9075 2.2853 16 6 1.8956 -0.6119 3.6440 17 6 3.3288 0.9747 2.3877 18 6 4.5173 0.3239 2.0615 19 6 5.7061 0.9864 2.0775 20 6 5.7391 2.3472 2.4272 21 6 6.9473 3.0647 2.4543 22 6 6.9407 4.3817 2.7973 23 6 5.7520 5.0324 3.1235 24 6 4.5636 4.3694 3.1090 25 6 4.5306 3.0086 2.7596 26 6 3.3216 2.2929 2.7257 27 1 -0.3634 0.5905 0.8410 28 1 -0.3634 0.4331 -0.9319 29 1 -0.3633 -1.0237 0.0909 30 1 1.6054 -0.2617 -2.1369 31 1 1.7516 -1.7715 -1.2055 32 1 4.0616 -2.2527 -4.0299 33 1 2.9338 -1.0889 1.0402 34 1 2.6795 -1.3687 3.6762 35 1 1.9906 0.0465 4.5074 36 1 0.9202 -1.0980 3.6632 37 1 4.4948 -0.7218 1.7928 38 1 6.6193 0.4690 1.8228 39 1 7.8761 2.5735 2.2046 40 1 7.8704 4.9309 2.8170 41 1 5.7746 6.0781 3.3926 42 1 3.6505 4.8865 3.3645 43 1 2.3923 2.7852 2.9714 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299733678.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:50 Heat of formation + Delta-G solvation = 24.854228 kcal Electronic energy + Delta-G solvation = -22191.216001 eV Core-core repulsion = 19200.049904 eV Total energy + Delta-G solvation = -2991.166097 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.163 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.31379 -37.92388 -35.63012 -33.42473 -32.50423 -31.83395 -29.55976 -28.81885 -27.73706 -27.35247 -23.56638 -23.18189 -22.96387 -21.78044 -20.49672 -19.40147 -17.12724 -16.69215 -16.41572 -16.21129 -14.83316 -14.80008 -14.58819 -14.35829 -13.76041 -13.41016 -13.28938 -13.18842 -13.12972 -12.81338 -12.34310 -12.11045 -11.90254 -11.76718 -11.53981 -11.26912 -11.12607 -10.98364 -10.81066 -10.78661 -10.59629 -10.44036 -10.39865 -10.18935 -9.79006 -9.20113 -9.04175 -8.39169 -8.30799 -7.72603 -7.67584 -6.00880 -4.03040 0.70381 1.18309 2.23560 3.15521 3.28578 3.36209 3.39238 4.28939 4.44264 4.69245 4.83743 4.93028 4.93898 5.08785 5.21497 5.30963 5.35910 5.44117 5.55201 5.56682 5.69372 5.75164 5.88230 5.96075 5.98289 6.10743 6.19231 6.22119 6.25872 6.32994 6.38276 6.41947 6.45858 6.54340 6.58315 6.78854 6.84183 6.94668 6.97463 6.98036 7.20101 7.54863 7.67446 7.99053 8.06035 8.26310 8.40348 9.03699 9.60946 11.10250 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.012639 B = 0.006484 C = 0.004830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2214.814836 B = 4317.416633 C = 5795.738052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.086 3.914 3 H 0.029 0.971 4 C 0.021 3.979 5 C -0.521 4.521 6 H 0.057 0.943 7 C 0.062 3.938 8 N -0.892 5.892 9 Si 0.882 3.118 10 H -0.280 1.280 11 H -0.287 1.287 12 H -0.273 1.273 13 N -0.673 5.673 14 C 0.117 3.883 15 H 0.078 0.922 16 C -0.131 4.131 17 C -0.090 4.090 18 C -0.092 4.092 19 C -0.106 4.106 20 C -0.054 4.054 21 C -0.103 4.103 22 C -0.127 4.127 23 C -0.124 4.124 24 C -0.107 4.107 25 C -0.048 4.048 26 C -0.111 4.111 27 H 0.034 0.966 28 H 0.048 0.952 29 H 0.055 0.945 30 H 0.020 0.980 31 H 0.025 0.975 32 H 0.260 0.740 33 H 0.355 0.645 34 H 0.055 0.945 35 H 0.050 0.950 36 H 0.062 0.938 37 H 0.129 0.871 38 H 0.124 0.876 39 H 0.123 0.877 40 H 0.118 0.882 41 H 0.118 0.882 42 H 0.123 0.877 43 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.836 9.292 14.387 17.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.023 4.023 3 H 0.047 0.953 4 C -0.016 4.016 5 C -0.559 4.559 6 H 0.075 0.925 7 C -0.140 4.140 8 N -0.531 5.531 9 Si 0.710 3.290 10 H -0.206 1.206 11 H -0.213 1.213 12 H -0.198 1.198 13 N -0.307 5.307 14 C 0.006 3.994 15 H 0.097 0.903 16 C -0.189 4.189 17 C -0.091 4.091 18 C -0.110 4.110 19 C -0.124 4.124 20 C -0.054 4.054 21 C -0.121 4.121 22 C -0.145 4.145 23 C -0.142 4.142 24 C -0.125 4.125 25 C -0.048 4.048 26 C -0.130 4.130 27 H 0.053 0.947 28 H 0.067 0.933 29 H 0.074 0.926 30 H 0.038 0.962 31 H 0.043 0.957 32 H 0.070 0.930 33 H 0.179 0.821 34 H 0.074 0.926 35 H 0.069 0.931 36 H 0.081 0.919 37 H 0.146 0.854 38 H 0.142 0.858 39 H 0.141 0.859 40 H 0.136 0.864 41 H 0.136 0.864 42 H 0.141 0.859 43 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 1.240 8.892 14.346 16.924 hybrid contribution 1.938 0.677 -0.549 2.125 sum 3.178 9.569 13.797 17.089 Atomic orbital electron populations 1.21818 0.96766 1.01241 0.99551 1.21621 0.93182 0.96056 0.91433 0.95253 1.19263 0.95542 0.96115 0.90717 1.21246 0.92156 1.34000 1.08530 0.92517 1.24963 0.97942 0.95326 0.95759 1.69959 1.35343 1.35668 1.12098 0.86741 0.86450 0.78490 0.77350 1.20584 1.21283 1.19774 1.60845 1.33457 1.32838 1.03609 1.20696 0.92439 0.93306 0.92991 0.90343 1.21729 1.02332 0.99619 0.95250 1.20563 0.96812 0.94566 0.97206 1.20748 0.91830 1.00787 0.97678 1.20983 0.98538 0.93176 0.99696 1.18099 0.93036 0.94112 1.00127 1.21040 0.97020 0.94636 0.99362 1.20762 0.98046 0.94907 1.00777 1.20763 0.92705 0.99752 1.00950 1.20986 0.98158 0.93340 0.99988 1.18056 0.93110 0.93831 0.99833 1.20827 0.96632 0.94010 1.01514 0.94657 0.93255 0.92553 0.96164 0.95651 0.93043 0.82141 0.92580 0.93131 0.91940 0.85354 0.85758 0.85878 0.86401 0.86410 0.85934 0.85995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.43 9.34 37.16 0.35 -2.09 16 2 C 0.09 1.79 2.42 -67.71 -0.16 1.62 16 3 H 0.03 0.64 7.71 -51.93 -0.40 0.24 16 4 C 0.02 0.53 4.59 -27.88 -0.13 0.40 16 5 C -0.52 -14.12 8.13 -34.44 -0.28 -14.40 16 6 H 0.06 1.49 6.42 -52.49 -0.34 1.15 16 7 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 8 N -0.89 -26.46 13.29 55.43 0.74 -25.72 16 9 Si 0.88 21.38 29.54 -169.99 -5.02 16.36 16 10 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 12 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 13 N -0.67 -12.60 6.04 -100.95 -0.61 -13.21 16 14 C 0.12 1.82 2.62 -68.86 -0.18 1.64 16 15 H 0.08 1.19 6.80 -51.93 -0.35 0.84 16 16 C -0.13 -1.75 9.50 37.16 0.35 -1.39 16 17 C -0.09 -1.44 4.64 -104.97 -0.49 -1.93 16 18 C -0.09 -1.56 7.99 -39.93 -0.32 -1.88 16 19 C -0.11 -1.72 9.77 -39.49 -0.39 -2.11 16 20 C -0.05 -0.84 5.74 -106.83 -0.61 -1.46 16 21 C -0.10 -1.39 9.77 -39.48 -0.39 -1.77 16 22 C -0.13 -1.51 9.95 -39.93 -0.40 -1.91 16 23 C -0.12 -1.44 9.95 -39.93 -0.40 -1.83 16 24 C -0.11 -1.36 9.77 -39.49 -0.39 -1.75 16 25 C -0.05 -0.73 5.74 -106.84 -0.61 -1.34 16 26 C -0.11 -1.67 9.36 -39.49 -0.37 -2.04 16 27 H 0.03 0.55 7.35 -51.93 -0.38 0.17 16 28 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 33 H 0.36 7.18 4.74 -39.29 -0.19 7.00 16 34 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 35 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.13 2.20 6.47 -52.49 -0.34 1.86 16 38 H 0.12 1.82 8.06 -52.49 -0.42 1.40 16 39 H 0.12 1.43 8.06 -52.49 -0.42 1.00 16 40 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 41 H 0.12 1.04 8.06 -52.48 -0.42 0.62 16 42 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 43 H 0.12 1.56 7.99 -52.48 -0.42 1.14 16 LS Contribution 347.98 15.07 5.24 5.24 Total: -1.00 -29.86 347.98 -10.78 -40.64 By element: Atomic # 1 Polarization: 13.92 SS G_CDS: -6.63 Total: 7.29 kcal Atomic # 6 Polarization: -26.09 SS G_CDS: -4.50 Total: -30.60 kcal Atomic # 7 Polarization: -39.06 SS G_CDS: 0.13 Total: -38.94 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -29.86 -10.78 -40.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299733678.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.498 kcal (2) G-P(sol) polarization free energy of solvation -29.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.643 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds