Wall clock time and date at job start Tue Mar 31 2020 06:34:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08997 * 109.46942 * 2 1 4 4 N 1.46900 * 109.47086 * 120.00097 * 2 1 3 5 5 C 1.46901 * 111.00121 * 207.66331 * 4 2 1 6 6 H 1.09004 * 109.47122 * 323.71196 * 5 4 2 7 7 C 1.52998 * 109.47462 * 83.71083 * 5 4 2 8 8 C 1.53001 * 109.47122 * 203.71315 * 5 4 2 9 9 C 1.50703 * 109.47056 * 64.99779 * 8 5 4 10 10 H 1.08003 * 119.99801 * 0.02562 * 9 8 5 11 11 C 1.37872 * 119.99776 * 179.72221 * 9 8 5 12 12 N 1.31521 * 120.00063 * 180.02562 * 11 9 8 13 13 Si 1.86797 * 120.00117 * 0.02562 * 11 9 8 14 14 H 1.48495 * 109.47389 * 90.00107 * 13 11 9 15 15 H 1.48507 * 109.46840 * 209.99835 * 13 11 9 16 16 H 1.48498 * 109.47112 * 329.99511 * 13 11 9 17 17 C 1.50698 * 109.47156 * 239.99918 * 2 1 3 18 18 C 1.39370 * 119.50519 * 279.72515 * 17 2 1 19 19 C 1.36098 * 120.98790 * 179.76932 * 18 17 2 20 20 C 1.40539 * 119.65078 * 0.48741 * 19 18 17 21 21 C 1.40544 * 121.28102 * 179.75426 * 20 19 18 22 22 C 1.36096 * 119.65190 * 180.02562 * 21 20 19 23 23 C 1.39381 * 120.98898 * 359.97438 * 22 21 20 24 24 C 1.36092 * 120.98727 * 0.06734 * 23 22 21 25 25 C 1.40537 * 119.65956 * 359.90850 * 24 23 22 26 26 C 1.36096 * 119.50563 * 100.00249 * 17 2 1 27 27 H 1.09001 * 109.47423 * 55.85693 * 1 2 3 28 28 H 1.08997 * 109.47306 * 175.85729 * 1 2 3 29 29 H 1.09000 * 109.47336 * 295.86140 * 1 2 3 30 30 H 1.00901 * 110.99716 * 331.61348 * 4 2 1 31 31 H 1.09005 * 109.46849 * 64.34528 * 7 5 4 32 32 H 1.09000 * 109.47494 * 184.34617 * 7 5 4 33 33 H 1.09004 * 109.47133 * 304.35074 * 7 5 4 34 34 H 1.08991 * 109.47058 * 304.99603 * 8 5 4 35 35 H 1.09001 * 109.46906 * 184.99345 * 8 5 4 36 36 H 0.96996 * 120.00227 * 180.02562 * 12 11 9 37 37 H 1.07999 * 119.50801 * 0.02562 * 18 17 2 38 38 H 1.07993 * 120.17516 * 180.25701 * 19 18 17 39 39 H 1.07999 * 120.17140 * 359.97438 * 21 20 19 40 40 H 1.07997 * 119.50622 * 179.97438 * 22 21 20 41 41 H 1.07993 * 119.50218 * 179.97438 * 23 22 21 42 42 H 1.07995 * 120.16982 * 179.97438 * 24 23 22 43 43 H 1.08008 * 120.17194 * 359.95129 * 26 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 3.3403 -0.1868 1.5970 6 1 3.9233 0.0465 0.7061 7 6 3.1694 1.0782 2.4404 8 6 4.0685 -1.2528 2.4183 9 6 4.3458 -2.4531 1.5502 10 1 4.0343 -2.4552 0.5161 11 6 5.0028 -3.5459 2.0745 12 7 5.2454 -4.5933 1.3169 13 14 5.5485 -3.5391 3.8610 14 1 4.4654 -4.0945 4.7116 15 1 6.7697 -4.3711 4.0087 16 1 5.8445 -2.1464 4.2829 17 6 2.0323 -0.7104 -1.2304 18 6 2.0679 -2.1035 -1.2522 19 6 2.5114 -2.7760 -2.3492 20 6 2.9503 -2.0578 -3.4747 21 6 3.4199 -2.7172 -4.6236 22 6 3.8374 -1.9887 -5.6946 23 6 3.8064 -0.5954 -5.6710 24 6 3.3590 0.0770 -4.5756 25 6 2.9191 -0.6411 -3.4505 26 6 2.4497 0.0181 -2.3016 27 1 -0.3634 0.5768 -0.8505 28 1 -0.3634 -1.0249 -0.0742 29 1 -0.3634 0.4483 0.9247 30 1 1.3588 -0.6132 1.9578 31 1 2.6535 0.8295 3.3679 32 1 4.1492 1.4966 2.6706 33 1 2.5836 1.8097 1.8837 34 1 3.4452 -1.5504 3.2614 35 1 5.0099 -0.8464 2.7878 36 1 5.7073 -5.3623 1.6859 37 1 1.7347 -2.6577 -0.3873 38 1 2.5296 -3.8558 -2.3534 39 1 3.4500 -3.7962 -4.6559 40 1 4.1982 -2.4978 -6.5761 41 1 4.1439 -0.0412 -6.5342 42 1 3.3410 1.1568 -4.5715 43 1 2.4198 1.0972 -2.2690 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299733679.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:54 Heat of formation + Delta-G solvation = 32.812747 kcal Electronic energy + Delta-G solvation = -22114.501307 eV Core-core repulsion = 19123.680317 eV Total energy + Delta-G solvation = -2990.820990 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.163 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.04333 -37.82553 -35.70905 -33.35813 -32.29304 -31.81852 -29.41140 -28.79065 -27.98851 -27.41095 -23.57213 -22.85406 -22.67135 -21.53614 -20.44243 -19.66036 -16.89360 -16.57859 -16.44703 -15.87320 -14.97650 -14.61911 -14.41888 -14.00852 -13.82187 -13.50885 -13.18138 -12.99515 -12.80959 -12.74124 -12.52562 -12.21456 -12.09408 -11.87584 -11.65760 -11.52018 -11.15533 -11.11292 -10.72013 -10.66599 -10.40653 -10.38070 -10.09366 -9.73999 -9.58111 -9.52556 -8.96503 -8.37079 -8.04547 -7.67428 -7.46347 -5.85259 -3.78399 0.93429 1.43999 2.47074 3.38711 3.41022 3.46421 3.48872 4.50976 4.58983 4.65439 4.93477 5.08414 5.12380 5.30559 5.37010 5.45242 5.48576 5.51271 5.53702 5.66085 5.75028 5.77714 5.79102 5.81150 5.93077 6.01699 6.04826 6.12577 6.27786 6.35339 6.40505 6.48060 6.52731 6.64122 6.68861 6.76067 6.84138 7.08600 7.17253 7.20725 7.22055 7.37015 7.50450 7.83240 7.95036 8.10875 8.79004 9.29205 9.78375 11.28345 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.014666 B = 0.005639 C = 0.004549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1908.765145 B = 4964.191245 C = 6153.491617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.119 3.881 3 H 0.046 0.954 4 N -0.657 5.657 5 C 0.099 3.901 6 H 0.070 0.930 7 C -0.183 4.183 8 C -0.004 4.004 9 C -0.488 4.488 10 H 0.085 0.915 11 C 0.061 3.939 12 N -0.908 5.908 13 Si 0.871 3.129 14 H -0.281 1.281 15 H -0.292 1.292 16 H -0.270 1.270 17 C -0.050 4.050 18 C -0.056 4.056 19 C -0.112 4.112 20 C -0.049 4.049 21 C -0.101 4.101 22 C -0.130 4.130 23 C -0.128 4.128 24 C -0.108 4.108 25 C -0.052 4.052 26 C -0.123 4.123 27 H 0.057 0.943 28 H 0.066 0.934 29 H 0.055 0.945 30 H 0.334 0.666 31 H 0.051 0.949 32 H 0.055 0.945 33 H 0.041 0.959 34 H 0.010 0.990 35 H 0.014 0.986 36 H 0.258 0.742 37 H 0.138 0.862 38 H 0.124 0.876 39 H 0.123 0.877 40 H 0.116 0.884 41 H 0.115 0.885 42 H 0.119 0.881 43 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.089 9.808 -8.871 15.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.008 3.992 3 H 0.064 0.936 4 N -0.287 5.287 5 C -0.010 4.010 6 H 0.088 0.912 7 C -0.242 4.242 8 C -0.042 4.042 9 C -0.526 4.526 10 H 0.103 0.897 11 C -0.138 4.138 12 N -0.549 5.549 13 Si 0.700 3.300 14 H -0.207 1.207 15 H -0.218 1.218 16 H -0.195 1.195 17 C -0.051 4.051 18 C -0.074 4.074 19 C -0.130 4.130 20 C -0.049 4.049 21 C -0.119 4.119 22 C -0.149 4.149 23 C -0.146 4.146 24 C -0.126 4.126 25 C -0.052 4.052 26 C -0.142 4.142 27 H 0.076 0.924 28 H 0.085 0.915 29 H 0.074 0.926 30 H 0.153 0.847 31 H 0.070 0.930 32 H 0.074 0.926 33 H 0.060 0.940 34 H 0.029 0.971 35 H 0.032 0.968 36 H 0.067 0.933 37 H 0.156 0.844 38 H 0.142 0.858 39 H 0.141 0.859 40 H 0.134 0.866 41 H 0.133 0.867 42 H 0.137 0.863 43 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -7.753 9.101 -9.204 15.088 hybrid contribution 0.364 0.714 1.424 1.634 sum -7.389 9.815 -7.780 14.542 Atomic orbital electron populations 1.21956 0.94457 1.02804 1.01355 1.20428 0.93988 0.94597 0.90137 0.93642 1.60448 1.03979 1.58353 1.05946 1.21584 0.89755 0.92100 0.97589 0.91218 1.22601 1.01502 0.99526 1.00565 1.19603 0.94207 0.94829 0.95516 1.21137 1.34591 0.97678 0.99178 0.89744 1.24997 0.96196 0.95832 0.96792 1.69911 1.43343 1.05906 1.35703 0.86928 0.78154 0.77951 0.87012 1.20699 1.21844 1.19492 1.19606 0.97192 0.94230 0.94095 1.20812 0.95865 0.93560 0.97197 1.21064 0.99340 0.99836 0.92792 1.18135 0.99399 0.92622 0.94778 1.21057 0.98317 0.99713 0.92772 1.20724 1.01392 0.94103 0.98635 1.20704 1.01159 0.94449 0.98300 1.20932 0.99452 0.99188 0.93044 1.17957 1.00088 0.92667 0.94520 1.20733 1.01347 0.98905 0.93199 0.92382 0.91513 0.92640 0.84739 0.93014 0.92597 0.94038 0.97140 0.96763 0.93251 0.84400 0.85772 0.85886 0.86623 0.86713 0.86297 0.86583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 9.17 37.15 0.34 -1.45 16 2 C 0.12 1.77 2.58 -68.87 -0.18 1.59 16 3 H 0.05 0.66 6.82 -51.93 -0.35 0.30 16 4 N -0.66 -11.35 4.96 -100.96 -0.50 -11.85 16 5 C 0.10 1.89 2.34 -67.71 -0.16 1.73 16 6 H 0.07 1.45 7.75 -51.93 -0.40 1.05 16 7 C -0.18 -2.82 9.16 37.16 0.34 -2.48 16 8 C 0.00 -0.09 3.72 -27.88 -0.10 -0.19 16 9 C -0.49 -13.59 9.39 -34.44 -0.32 -13.92 16 10 H 0.08 2.53 6.95 -52.48 -0.36 2.16 16 11 C 0.06 1.78 5.47 -17.82 -0.10 1.68 16 12 N -0.91 -28.08 13.96 55.43 0.77 -27.30 16 13 Si 0.87 22.01 27.47 -169.99 -4.67 17.34 16 14 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 15 H -0.29 -7.42 7.11 56.52 0.40 -7.01 16 16 H -0.27 -6.58 6.53 56.52 0.37 -6.21 16 17 C -0.05 -0.85 4.71 -104.97 -0.49 -1.34 16 18 C -0.06 -1.05 8.21 -39.93 -0.33 -1.38 16 19 C -0.11 -2.05 9.77 -39.48 -0.39 -2.44 16 20 C -0.05 -0.85 5.74 -106.83 -0.61 -1.46 16 21 C -0.10 -1.52 9.77 -39.48 -0.39 -1.90 16 22 C -0.13 -1.73 9.95 -39.93 -0.40 -2.13 16 23 C -0.13 -1.64 9.95 -39.93 -0.40 -2.04 16 24 C -0.11 -1.50 9.77 -39.49 -0.39 -1.89 16 25 C -0.05 -0.85 5.74 -106.84 -0.61 -1.47 16 26 C -0.12 -1.95 9.36 -39.49 -0.37 -2.32 16 27 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 29 H 0.05 0.59 8.04 -51.93 -0.42 0.17 16 30 H 0.33 5.21 8.02 -39.29 -0.32 4.89 16 31 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.04 0.56 7.32 -51.93 -0.38 0.18 16 34 H 0.01 0.24 7.58 -51.93 -0.39 -0.15 16 35 H 0.01 0.34 7.18 -51.93 -0.37 -0.03 16 36 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 37 H 0.14 2.77 7.67 -52.49 -0.40 2.37 16 38 H 0.12 2.16 8.06 -52.49 -0.42 1.74 16 39 H 0.12 1.64 8.06 -52.49 -0.42 1.22 16 40 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 41 H 0.11 1.15 8.06 -52.49 -0.42 0.73 16 42 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 43 H 0.12 1.56 8.00 -52.48 -0.42 1.14 16 LS Contribution 348.44 15.07 5.25 5.25 Total: -1.00 -31.18 348.44 -10.49 -41.68 By element: Atomic # 1 Polarization: 13.09 SS G_CDS: -6.80 Total: 6.29 kcal Atomic # 6 Polarization: -26.86 SS G_CDS: -4.55 Total: -31.41 kcal Atomic # 7 Polarization: -39.42 SS G_CDS: 0.27 Total: -39.15 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -4.67 Total: 17.34 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -31.18 -10.49 -41.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299733679.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.489 kcal (2) G-P(sol) polarization free energy of solvation -31.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.676 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds