Wall clock time and date at job start Tue Mar 31 2020 06:34:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09008 * 109.47115 * 2 1 4 4 C 1.52993 * 109.47285 * 240.00082 * 2 1 3 5 5 C 1.50704 * 109.47504 * 174.99719 * 4 2 1 6 6 H 1.07997 * 119.99461 * 0.02562 * 5 4 2 7 7 C 1.37872 * 120.00138 * 180.02562 * 5 4 2 8 8 N 1.31511 * 120.00301 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99734 * 180.02562 * 7 5 4 10 10 H 1.48493 * 109.47321 * 359.97438 * 9 7 5 11 11 H 1.48502 * 109.47094 * 119.99871 * 9 7 5 12 12 H 1.48504 * 109.46870 * 239.99557 * 9 7 5 13 13 N 1.46903 * 109.47104 * 119.99811 * 2 1 3 14 14 C 1.46892 * 111.00193 * 274.99955 * 13 2 1 15 15 H 1.09002 * 109.47328 * 35.00161 * 14 13 2 16 16 C 1.52999 * 109.47589 * 275.00313 * 14 13 2 17 17 C 1.50700 * 109.47160 * 154.99885 * 14 13 2 18 18 C 1.39378 * 119.50227 * 40.04691 * 17 14 13 19 19 C 1.36095 * 120.98758 * 180.02562 * 18 17 14 20 20 C 1.40545 * 119.65358 * 359.95511 * 19 18 17 21 21 C 1.40538 * 121.28925 * 180.02562 * 20 19 18 22 22 C 1.36093 * 119.65463 * 179.97438 * 21 20 19 23 23 C 1.39374 * 120.98985 * 359.97438 * 22 21 20 24 24 C 1.36086 * 120.98866 * 0.02562 * 23 22 21 25 25 C 1.40545 * 119.65613 * 359.95260 * 24 23 22 26 26 C 1.36093 * 119.50844 * 219.99808 * 17 14 13 27 27 H 1.08998 * 109.47081 * 59.99828 * 1 2 3 28 28 H 1.08994 * 109.47073 * 179.97438 * 1 2 3 29 29 H 1.09007 * 109.47169 * 300.00061 * 1 2 3 30 30 H 1.08992 * 109.47173 * 295.00058 * 4 2 1 31 31 H 1.09004 * 109.47211 * 54.99773 * 4 2 1 32 32 H 0.97001 * 120.00637 * 180.02562 * 8 7 5 33 33 H 1.00896 * 111.00091 * 38.95926 * 13 2 1 34 34 H 1.09002 * 109.47057 * 59.99779 * 16 14 13 35 35 H 1.08995 * 109.47528 * 180.02562 * 16 14 13 36 36 H 1.09002 * 109.46661 * 300.00255 * 16 14 13 37 37 H 1.07996 * 119.50867 * 359.97192 * 18 17 14 38 38 H 1.07998 * 120.16921 * 180.22554 * 19 18 17 39 39 H 1.08005 * 120.17193 * 359.95450 * 21 20 19 40 40 H 1.08000 * 119.50239 * 180.02562 * 22 21 20 41 41 H 1.07996 * 119.50518 * 179.97438 * 23 22 21 42 42 H 1.08001 * 120.17881 * 179.97438 * 24 23 22 43 43 H 1.07996 * 120.17171 * 0.02897 * 26 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5419 -0.6148 -1.3127 6 1 4.0789 -0.0861 -0.5392 7 6 4.2303 -1.1925 -2.3583 8 7 3.5764 -1.8368 -3.3000 9 14 6.0921 -1.0612 -2.4366 10 1 6.5837 -0.2917 -1.2656 11 1 6.6854 -2.4224 -2.4196 12 1 6.4870 -0.3647 -3.6873 13 7 2.0196 -0.6925 1.1995 14 6 2.0824 0.2226 2.3469 15 1 1.2576 0.9329 2.2907 16 6 3.4110 0.9810 2.3224 17 6 1.9785 -0.5676 3.6259 18 6 2.6432 -1.7879 3.7347 19 6 2.5697 -2.5265 4.8754 20 6 1.8139 -2.0543 5.9621 21 6 1.7149 -2.7886 7.1563 22 6 0.9742 -2.2995 8.1880 23 6 0.3108 -1.0786 8.0796 24 6 0.3839 -0.3403 6.9388 25 6 1.1397 -0.8126 5.8521 26 6 1.2380 -0.0786 4.6577 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 1.7516 -1.7714 -1.2056 31 1 1.6053 -0.2617 -2.1369 32 1 4.0607 -2.2436 -4.0355 33 1 1.4496 -1.4979 1.4101 34 1 3.4861 1.5525 1.3973 35 1 3.4578 1.6596 3.1740 36 1 4.2359 0.2706 2.3785 37 1 3.2246 -2.1531 2.9011 38 1 3.0930 -3.4686 4.9466 39 1 2.2236 -3.7362 7.2546 40 1 0.9002 -2.8657 9.1048 41 1 -0.2707 -0.7134 8.9132 42 1 -0.1358 0.6039 6.8689 43 1 0.7287 0.8686 4.5591 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299733680.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:58 Heat of formation + Delta-G solvation = 27.446756 kcal Electronic energy + Delta-G solvation = -21517.286516 eV Core-core repulsion = 18526.232839 eV Total energy + Delta-G solvation = -2991.053677 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.163 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.43908 -37.92645 -35.95434 -33.35621 -32.61995 -31.80702 -29.65984 -28.90414 -27.85017 -27.13577 -23.81871 -23.25389 -22.88800 -21.94613 -20.55825 -19.56214 -17.26892 -16.94132 -16.30030 -15.99673 -15.07934 -14.79261 -14.48387 -14.21159 -13.97593 -13.69887 -13.42577 -13.33777 -13.00245 -12.69051 -12.55886 -12.15128 -11.90184 -11.74118 -11.65455 -11.39906 -11.28218 -11.03891 -10.96031 -10.81062 -10.57771 -10.49430 -10.30573 -9.97492 -9.96620 -9.24720 -8.93484 -8.48573 -8.22831 -7.88173 -7.57701 -5.84890 -3.82083 0.52787 1.01363 2.05377 2.99266 3.39704 3.47275 3.52065 4.11665 4.51216 4.59069 4.71388 4.76302 4.86670 4.95004 5.07878 5.15472 5.33794 5.38037 5.52281 5.53567 5.62633 5.71621 5.75646 5.83721 5.91129 5.95069 6.00117 6.06803 6.14681 6.23332 6.27115 6.34459 6.40279 6.48417 6.61387 6.65880 6.68966 6.76404 6.81279 7.04557 7.07166 7.59932 7.72761 8.04989 8.09336 8.20439 8.63788 9.23824 9.79120 11.27369 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.024358 B = 0.003666 C = 0.003445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.249936 B = 7636.949500 C = 8124.626705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.089 3.911 3 H 0.065 0.935 4 C 0.033 3.967 5 C -0.484 4.484 6 H 0.060 0.940 7 C 0.049 3.951 8 N -0.905 5.905 9 Si 0.887 3.113 10 H -0.274 1.274 11 H -0.287 1.287 12 H -0.288 1.288 13 N -0.656 5.656 14 C 0.120 3.880 15 H 0.043 0.957 16 C -0.133 4.133 17 C -0.068 4.068 18 C -0.089 4.089 19 C -0.115 4.115 20 C -0.054 4.054 21 C -0.105 4.105 22 C -0.125 4.125 23 C -0.124 4.124 24 C -0.106 4.106 25 C -0.050 4.050 26 C -0.112 4.112 27 H 0.056 0.944 28 H 0.050 0.950 29 H 0.036 0.964 30 H 0.016 0.984 31 H 0.016 0.984 32 H 0.256 0.744 33 H 0.333 0.667 34 H 0.063 0.937 35 H 0.045 0.955 36 H 0.063 0.937 37 H 0.140 0.860 38 H 0.126 0.874 39 H 0.124 0.876 40 H 0.119 0.881 41 H 0.119 0.881 42 H 0.123 0.877 43 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.363 1.704 21.058 22.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.020 4.020 3 H 0.084 0.916 4 C -0.004 4.004 5 C -0.523 4.523 6 H 0.079 0.921 7 C -0.150 4.150 8 N -0.546 5.546 9 Si 0.716 3.284 10 H -0.198 1.198 11 H -0.214 1.214 12 H -0.215 1.215 13 N -0.287 5.287 14 C 0.010 3.990 15 H 0.061 0.939 16 C -0.190 4.190 17 C -0.068 4.068 18 C -0.107 4.107 19 C -0.133 4.133 20 C -0.054 4.054 21 C -0.123 4.123 22 C -0.143 4.143 23 C -0.142 4.142 24 C -0.124 4.124 25 C -0.051 4.051 26 C -0.130 4.130 27 H 0.075 0.925 28 H 0.069 0.931 29 H 0.055 0.945 30 H 0.035 0.965 31 H 0.035 0.965 32 H 0.065 0.935 33 H 0.151 0.849 34 H 0.082 0.918 35 H 0.064 0.936 36 H 0.082 0.918 37 H 0.158 0.842 38 H 0.144 0.856 39 H 0.142 0.858 40 H 0.137 0.863 41 H 0.137 0.863 42 H 0.141 0.859 43 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -5.657 1.703 20.726 21.551 hybrid contribution 0.038 0.052 0.090 0.110 sum -5.620 1.754 20.816 21.632 Atomic orbital electron populations 1.22560 0.99618 1.01195 1.00535 1.21835 0.89766 0.98250 0.92176 0.91647 1.19105 0.96281 0.95361 0.89648 1.21199 0.91860 1.32599 1.06658 0.92148 1.25007 0.97870 0.96036 0.96119 1.69973 1.35022 1.37177 1.12426 0.86608 0.86662 0.77523 0.77589 1.19835 1.21371 1.21503 1.60707 1.57743 1.08251 1.01962 1.20506 0.97709 0.93328 0.87406 0.93918 1.21769 0.96817 0.99515 1.00941 1.19881 0.95979 0.95227 0.95737 1.20985 0.97970 0.93671 0.98032 1.21061 0.99185 1.00114 0.92900 1.18132 0.98153 0.94427 0.94724 1.21037 0.99060 0.99459 0.92710 1.20791 0.98193 0.96439 0.98900 1.20784 1.00192 0.95265 0.97948 1.21012 0.98678 0.99766 0.92944 1.18044 0.98020 0.94470 0.94519 1.20875 1.00003 0.99673 0.92476 0.92501 0.93067 0.94486 0.96549 0.96545 0.93461 0.84903 0.91791 0.93645 0.91768 0.84227 0.85618 0.85792 0.86334 0.86340 0.85879 0.85924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.02 9.15 37.15 0.34 -2.68 16 2 C 0.09 1.76 2.34 -67.72 -0.16 1.60 16 3 H 0.07 1.32 7.11 -51.92 -0.37 0.95 16 4 C 0.03 0.84 4.65 -27.88 -0.13 0.71 16 5 C -0.48 -13.44 8.84 -34.44 -0.30 -13.75 16 6 H 0.06 1.66 7.74 -52.49 -0.41 1.25 16 7 C 0.05 1.40 5.46 -17.82 -0.10 1.30 16 8 N -0.90 -27.42 13.29 55.43 0.74 -26.68 16 9 Si 0.89 22.06 29.54 -169.99 -5.02 17.04 16 10 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 12 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 13 N -0.66 -11.82 5.12 -100.96 -0.52 -12.34 16 14 C 0.12 1.84 2.60 -68.87 -0.18 1.66 16 15 H 0.04 0.63 6.93 -51.93 -0.36 0.27 16 16 C -0.13 -2.07 9.37 37.16 0.35 -1.72 16 17 C -0.07 -0.95 4.68 -104.97 -0.49 -1.45 16 18 C -0.09 -1.25 8.89 -39.93 -0.36 -1.60 16 19 C -0.11 -1.45 9.77 -39.48 -0.39 -1.84 16 20 C -0.05 -0.69 5.74 -106.83 -0.61 -1.30 16 21 C -0.10 -1.11 9.77 -39.49 -0.39 -1.50 16 22 C -0.13 -1.19 9.95 -39.93 -0.40 -1.59 16 23 C -0.12 -1.18 9.95 -39.93 -0.40 -1.58 16 24 C -0.11 -1.13 9.77 -39.49 -0.39 -1.51 16 25 C -0.05 -0.64 5.74 -106.83 -0.61 -1.25 16 26 C -0.11 -1.43 9.36 -39.49 -0.37 -1.80 16 27 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.05 0.85 8.13 -51.93 -0.42 0.43 16 29 H 0.04 0.55 7.43 -51.93 -0.39 0.16 16 30 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 33 H 0.33 5.80 7.72 -39.29 -0.30 5.50 16 34 H 0.06 1.08 7.43 -51.93 -0.39 0.69 16 35 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 36 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.14 2.10 7.68 -52.49 -0.40 1.70 16 38 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 39 H 0.12 1.05 8.06 -52.48 -0.42 0.63 16 40 H 0.12 0.84 8.06 -52.49 -0.42 0.41 16 41 H 0.12 0.84 8.06 -52.49 -0.42 0.41 16 42 H 0.12 1.06 8.06 -52.49 -0.42 0.63 16 43 H 0.12 1.36 8.00 -52.49 -0.42 0.95 16 LS Contribution 352.76 15.07 5.32 5.32 Total: -1.00 -30.49 352.76 -10.88 -41.37 By element: Atomic # 1 Polarization: 10.41 SS G_CDS: -6.82 Total: 3.59 kcal Atomic # 6 Polarization: -23.72 SS G_CDS: -4.58 Total: -28.29 kcal Atomic # 7 Polarization: -39.24 SS G_CDS: 0.22 Total: -39.02 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -30.49 -10.88 -41.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299733680.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.817 kcal (2) G-P(sol) polarization free energy of solvation -30.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.370 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds