Wall clock time and date at job start Tue Mar 31 2020 06:54:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.47205 * 2 1 4 4 C 1.53004 * 109.47163 * 239.99983 * 2 1 3 5 5 C 1.50694 * 109.47117 * 119.99789 * 2 1 3 6 6 C 1.29824 * 118.55843 * 0.02562 * 5 2 1 7 7 C 1.50138 * 123.29128 * 180.39637 * 6 5 2 8 8 N 1.46848 * 110.27210 * 342.92506 * 7 6 5 9 9 C 1.46896 * 110.99973 * 174.31745 * 8 7 6 10 10 C 1.53006 * 109.47501 * 66.04283 * 9 8 7 11 11 C 1.52999 * 109.46997 * 180.02562 * 10 9 8 12 12 S 1.81000 * 109.46638 * 180.02562 * 11 10 9 13 13 C 1.76206 * 99.99929 * 179.97438 * 12 11 10 14 14 H 1.07998 * 119.99720 * 359.97438 * 13 12 11 15 15 C 1.38796 * 119.99847 * 180.02562 * 13 12 11 16 16 N 1.31625 * 120.00398 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 119.99778 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47367 * 59.99618 * 17 15 13 19 19 H 1.48498 * 109.47311 * 180.02562 * 17 15 13 20 20 H 1.48504 * 109.46831 * 299.99623 * 17 15 13 21 21 C 1.47239 * 110.20668 * 50.92592 * 8 7 6 22 22 C 1.50310 * 118.55789 * 180.02562 * 5 2 1 23 23 H 1.08995 * 109.47610 * 299.99867 * 1 2 3 24 24 H 1.08997 * 109.47623 * 60.00322 * 1 2 3 25 25 H 1.09002 * 109.47312 * 179.97438 * 1 2 3 26 26 H 1.08992 * 109.47474 * 180.02562 * 3 2 1 27 27 H 1.09001 * 109.47036 * 300.00187 * 3 2 1 28 28 H 1.08996 * 109.47250 * 59.99632 * 3 2 1 29 29 H 1.09002 * 109.46913 * 299.99802 * 4 2 1 30 30 H 1.09001 * 109.46978 * 59.99874 * 4 2 1 31 31 H 1.08997 * 109.46772 * 179.97438 * 4 2 1 32 32 H 1.08009 * 118.35156 * 0.36975 * 6 5 2 33 33 H 1.09003 * 109.33640 * 222.68157 * 7 6 5 34 34 H 1.09000 * 109.33901 * 103.16851 * 7 6 5 35 35 H 1.09000 * 109.47017 * 306.04429 * 9 8 7 36 36 H 1.08996 * 109.47227 * 186.04749 * 9 8 7 37 37 H 1.09000 * 109.46866 * 60.00053 * 10 9 8 38 38 H 1.09001 * 109.46611 * 300.00170 * 10 9 8 39 39 H 1.09000 * 109.47486 * 60.00167 * 11 10 9 40 40 H 1.09001 * 109.47362 * 299.99445 * 11 10 9 41 41 H 0.96996 * 120.00393 * 180.02562 * 16 15 13 42 42 H 1.08997 * 109.63657 * 50.89196 * 21 8 7 43 43 H 1.08997 * 109.63569 * 171.50449 * 21 8 7 44 44 H 1.09000 * 109.42925 * 283.58262 * 22 5 2 45 45 H 1.09006 * 109.42463 * 43.47371 * 22 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 2.0323 -0.7103 1.2304 6 6 1.1641 -1.1934 2.0661 7 6 1.5460 -1.9118 3.3279 8 7 2.9511 -2.3342 3.2675 9 6 3.3805 -2.9188 4.5449 10 6 2.6187 -4.2228 4.7907 11 6 3.0654 -4.8313 6.1215 12 16 2.1648 -6.3742 6.4118 13 6 2.8557 -6.8446 7.9630 14 1 3.6051 -6.2234 8.4309 15 6 2.4378 -8.0140 8.5828 16 7 1.5249 -8.7714 8.0123 17 14 3.1698 -8.5123 10.2276 18 1 2.8938 -7.4549 11.2331 19 1 2.5607 -9.7911 10.6735 20 1 4.6374 -8.6874 10.0835 21 6 3.8083 -1.1971 2.8930 22 6 3.5165 -0.8285 1.4363 23 1 -0.3634 0.5138 0.8899 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 3.1299 1.4425 -0.0005 27 1 1.6766 1.9563 -0.8900 28 1 1.6766 1.9563 0.8899 29 1 1.6766 -1.7490 -1.2492 30 1 1.6766 -0.2074 -2.1392 31 1 3.1299 -0.7208 -1.2494 32 1 0.1144 -1.0719 1.8426 33 1 0.9105 -2.7889 3.4503 34 1 1.4057 -1.2457 4.1792 35 1 3.1719 -2.2183 5.3535 36 1 4.4503 -3.1242 4.5091 37 1 2.8273 -4.9234 3.9821 38 1 1.5488 -4.0172 4.8265 39 1 2.8565 -4.1306 6.9298 40 1 4.1353 -5.0368 6.0861 41 1 1.2325 -9.5884 8.4456 42 1 3.5891 -0.3454 3.5370 43 1 4.8562 -1.4785 2.9969 44 1 3.9131 -1.6030 0.7799 45 1 3.9920 0.1239 1.2018 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336726883.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:23 Heat of formation + Delta-G solvation = -9.871938 kcal Electronic energy + Delta-G solvation = -19915.315830 eV Core-core repulsion = 17058.087844 eV Total energy + Delta-G solvation = -2857.227986 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.167 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.84280 -37.39162 -33.89701 -32.40524 -31.28125 -30.87786 -27.65537 -27.49140 -26.21161 -25.44211 -23.76737 -22.64620 -20.77986 -20.05314 -17.46557 -17.24546 -16.46312 -15.34662 -14.84845 -14.80938 -14.76991 -14.59731 -14.35465 -14.10742 -13.76182 -13.36391 -12.92767 -12.83464 -12.72533 -12.35937 -12.21845 -11.96475 -11.84168 -11.63312 -11.59300 -11.48432 -11.20656 -11.16253 -11.02712 -10.77400 -10.71703 -10.54083 -10.26685 -10.21431 -9.48949 -9.02624 -8.86799 -8.28289 -8.25447 -6.49373 -6.19895 -3.89919 2.17856 3.23334 3.24864 3.29396 3.56825 3.97904 4.25555 4.36934 4.49965 4.74717 4.87326 4.98496 5.10546 5.15812 5.21881 5.23888 5.32365 5.36524 5.37903 5.41951 5.47042 5.51891 5.55357 5.61708 5.65059 5.66749 5.67527 5.79322 5.79656 5.82642 5.91977 5.96193 6.00016 6.08235 6.10291 6.14619 6.39450 6.44426 6.64036 6.80939 6.91328 7.10050 7.20124 7.62783 8.39126 9.26091 10.88259 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.044492 B = 0.002548 C = 0.002482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 629.169509 B =10984.973648 C =11280.075648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.035 4.035 3 C -0.138 4.138 4 C -0.137 4.137 5 C -0.107 4.107 6 C -0.163 4.163 7 C 0.080 3.920 8 N -0.531 5.531 9 C 0.059 3.941 10 C -0.093 4.093 11 C -0.112 4.112 12 S -0.133 6.133 13 C -0.516 4.516 14 H 0.071 0.929 15 C 0.071 3.929 16 N -0.870 5.870 17 Si 0.918 3.082 18 H -0.274 1.274 19 H -0.283 1.283 20 H -0.274 1.274 21 C 0.052 3.948 22 C -0.076 4.076 23 H 0.057 0.943 24 H 0.054 0.946 25 H 0.060 0.940 26 H 0.056 0.944 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.057 0.943 30 H 0.053 0.947 31 H 0.056 0.944 32 H 0.117 0.883 33 H 0.090 0.910 34 H 0.042 0.958 35 H 0.032 0.968 36 H 0.074 0.926 37 H 0.074 0.926 38 H 0.064 0.936 39 H 0.057 0.943 40 H 0.060 0.940 41 H 0.267 0.733 42 H 0.033 0.967 43 H 0.076 0.924 44 H 0.079 0.921 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.273 19.850 -16.011 25.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.035 4.035 3 C -0.195 4.195 4 C -0.194 4.194 5 C -0.107 4.107 6 C -0.181 4.181 7 C -0.047 4.047 8 N -0.255 5.255 9 C -0.070 4.070 10 C -0.132 4.132 11 C -0.261 4.261 12 S 0.096 5.904 13 C -0.665 4.665 14 H 0.089 0.911 15 C -0.138 4.138 16 N -0.506 5.506 17 Si 0.744 3.256 18 H -0.200 1.200 19 H -0.208 1.208 20 H -0.199 1.199 21 C -0.076 4.076 22 C -0.113 4.113 23 H 0.076 0.924 24 H 0.073 0.927 25 H 0.079 0.921 26 H 0.075 0.925 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.135 0.865 33 H 0.108 0.892 34 H 0.060 0.940 35 H 0.050 0.950 36 H 0.092 0.908 37 H 0.092 0.908 38 H 0.083 0.917 39 H 0.076 0.924 40 H 0.078 0.922 41 H 0.077 0.923 42 H 0.051 0.949 43 H 0.094 0.906 44 H 0.097 0.903 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 0.417 18.785 -16.989 25.332 hybrid contribution 1.249 0.842 2.483 2.904 sum 1.666 19.627 -14.507 24.463 Atomic orbital electron populations 1.21976 0.94574 1.02043 1.01597 1.19606 0.95291 0.94953 0.93695 1.21854 1.01087 0.94991 1.01552 1.21831 1.01131 1.00395 0.96063 1.20783 0.95114 0.99114 0.95706 1.22330 0.99728 0.99717 0.96334 1.21020 0.90018 0.98732 0.94916 1.62427 1.02261 1.29299 1.31555 1.22227 1.00130 0.96070 0.88582 1.21269 0.99755 0.95259 0.96919 1.23233 1.02720 1.01785 0.98409 1.84632 1.55206 1.21588 1.29000 1.22653 1.27373 1.10942 1.05485 0.91062 1.25012 0.94996 0.95421 0.98382 1.70012 1.28481 1.13564 1.38507 0.86231 0.79252 0.77860 0.82215 1.19972 1.20827 1.19946 1.22170 0.97566 0.92175 0.95736 1.20458 0.93155 1.01209 0.96496 0.92369 0.92676 0.92100 0.92468 0.92685 0.92716 0.92398 0.92800 0.92497 0.86487 0.89186 0.93999 0.95020 0.90799 0.90763 0.91729 0.92413 0.92168 0.92278 0.94852 0.90579 0.90301 0.91082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.11 7.08 37.15 0.26 -0.85 16 2 C -0.04 -0.29 0.85 -155.66 -0.13 -0.42 16 3 C -0.14 -0.98 8.24 37.16 0.31 -0.68 16 4 C -0.14 -1.06 8.30 37.16 0.31 -0.75 16 5 C -0.11 -1.06 4.74 -100.93 -0.48 -1.54 16 6 C -0.16 -1.77 8.97 -35.97 -0.32 -2.10 16 7 C 0.08 0.99 5.26 -5.28 -0.03 0.97 16 8 N -0.53 -6.91 4.72 -236.13 -1.11 -8.02 16 9 C 0.06 0.83 4.95 -3.82 -0.02 0.81 16 10 C -0.09 -1.58 5.14 -26.73 -0.14 -1.72 16 11 C -0.11 -2.32 5.67 37.16 0.21 -2.10 16 12 S -0.13 -3.54 21.44 -107.50 -2.30 -5.84 16 13 C -0.52 -15.03 9.50 30.94 0.29 -14.73 16 14 H 0.07 2.00 7.80 -52.49 -0.41 1.59 16 15 C 0.07 2.04 5.49 -17.43 -0.10 1.94 16 16 N -0.87 -26.31 13.22 55.49 0.73 -25.58 16 17 Si 0.92 21.76 29.55 -169.99 -5.02 16.74 16 18 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 19 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 20 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 21 C 0.05 0.56 5.59 -3.60 -0.02 0.54 16 22 C -0.08 -0.73 5.30 -28.04 -0.15 -0.88 16 23 H 0.06 0.44 7.42 -51.93 -0.39 0.06 16 24 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.06 0.49 7.41 -51.93 -0.38 0.11 16 26 H 0.06 0.39 6.81 -51.93 -0.35 0.04 16 27 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 28 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.43 7.59 -51.93 -0.39 0.03 16 32 H 0.12 1.15 5.26 -52.48 -0.28 0.87 16 33 H 0.09 1.18 6.73 -51.93 -0.35 0.83 16 34 H 0.04 0.52 8.06 -51.93 -0.42 0.10 16 35 H 0.03 0.44 8.06 -51.93 -0.42 0.02 16 36 H 0.07 1.00 7.94 -51.93 -0.41 0.59 16 37 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 38 H 0.06 1.10 6.67 -51.93 -0.35 0.76 16 39 H 0.06 1.18 8.14 -51.92 -0.42 0.76 16 40 H 0.06 1.23 8.14 -51.91 -0.42 0.81 16 41 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 42 H 0.03 0.36 8.08 -51.93 -0.42 -0.06 16 43 H 0.08 0.77 7.92 -51.93 -0.41 0.36 16 44 H 0.08 0.79 8.02 -51.93 -0.42 0.37 16 45 H 0.07 0.57 6.63 -51.93 -0.34 0.23 16 LS Contribution 359.17 15.07 5.41 5.41 Total: -1.00 -30.88 359.17 -10.55 -41.43 By element: Atomic # 1 Polarization: 5.62 SS G_CDS: -8.26 Total: -2.63 kcal Atomic # 6 Polarization: -21.51 SS G_CDS: 0.00 Total: -21.51 kcal Atomic # 7 Polarization: -33.22 SS G_CDS: -0.38 Total: -33.60 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Atomic # 16 Polarization: -3.54 SS G_CDS: -2.30 Total: -5.84 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -30.88 -10.55 -41.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336726883.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.557 kcal (2) G-P(sol) polarization free energy of solvation -30.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds