Wall clock time and date at job start Tue Mar 31 2020 06:53:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 110.26916 * 2 1 4 4 C 1.54333 * 110.30742 * 122.08177 * 2 1 3 5 5 N 1.48439 * 104.58016 * 94.16541 * 4 2 1 6 6 C 1.46903 * 110.99899 * 159.16979 * 5 4 2 7 7 C 1.53003 * 109.46995 * 74.09257 * 6 5 4 8 8 C 1.53001 * 109.46981 * 180.02562 * 7 6 5 9 9 S 1.80998 * 109.47373 * 179.97438 * 8 7 6 10 10 C 1.76197 * 100.00337 * 180.02562 * 9 8 7 11 11 H 1.07996 * 119.99540 * 359.97438 * 10 9 8 12 12 C 1.38799 * 120.00221 * 180.02562 * 10 9 8 13 13 N 1.31635 * 119.99632 * 0.02562 * 12 10 9 14 14 Si 1.86791 * 120.00156 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.47021 * 60.00236 * 14 12 10 16 16 H 1.48498 * 109.47438 * 179.97438 * 14 12 10 17 17 H 1.48497 * 109.47276 * 300.00239 * 14 12 10 18 18 C 1.48422 * 104.62153 * 39.37596 * 5 4 2 19 19 H 1.09003 * 111.89647 * 83.22276 * 18 5 4 20 20 C 1.53776 * 108.80814 * 207.34005 * 18 5 4 21 21 C 1.56353 * 105.68211 * 113.01197 * 20 18 5 22 22 C 1.54824 * 104.54397 * 336.39542 * 21 20 18 23 23 C 1.54054 * 110.30115 * 237.81948 * 2 1 3 24 24 H 1.09003 * 112.46374 * 119.84822 * 23 2 1 25 25 H 1.09001 * 109.47066 * 307.55901 * 1 2 3 26 26 H 1.08997 * 109.47536 * 67.56154 * 1 2 3 27 27 H 1.09003 * 109.47359 * 187.56239 * 1 2 3 28 28 H 1.08999 * 109.46970 * 180.62802 * 3 2 1 29 29 H 1.09005 * 109.46917 * 300.63068 * 3 2 1 30 30 H 1.08993 * 109.46807 * 60.62718 * 3 2 1 31 31 H 1.09004 * 110.40949 * 335.38783 * 4 2 1 32 32 H 1.08997 * 110.41318 * 212.94623 * 4 2 1 33 33 H 1.09000 * 109.47323 * 194.08969 * 6 5 4 34 34 H 1.09000 * 109.47077 * 314.08906 * 6 5 4 35 35 H 1.09000 * 109.46850 * 300.00002 * 7 6 5 36 36 H 1.08992 * 109.47364 * 60.00153 * 7 6 5 37 37 H 1.09000 * 109.47165 * 299.99607 * 8 7 6 38 38 H 1.09000 * 109.47249 * 59.99552 * 8 7 6 39 39 H 0.97002 * 119.99519 * 179.97438 * 13 12 10 40 40 H 1.09007 * 110.00153 * 233.47501 * 20 18 5 41 41 H 1.09000 * 110.00317 * 354.82622 * 20 18 5 42 42 H 1.09001 * 110.51449 * 217.50082 * 21 20 18 43 43 H 1.09000 * 110.12024 * 95.09060 * 21 20 18 44 44 H 1.08996 * 110.71770 * 279.40840 * 22 21 20 45 45 H 1.09000 * 110.71349 * 156.15710 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0601 1.4353 0.0000 4 6 2.0656 -0.7688 1.2264 5 7 2.2932 -2.1496 0.7316 6 6 3.2386 -2.8693 1.5955 7 6 2.5440 -3.2522 2.9039 8 6 3.5288 -4.0011 3.8040 9 16 2.7075 -4.4535 5.3521 10 6 4.0319 -5.2768 6.1721 11 1 4.9927 -5.3692 5.6876 12 6 3.8402 -5.8076 7.4402 13 7 2.6687 -5.6962 8.0300 14 14 5.2441 -6.6811 8.3091 15 1 6.3807 -5.7411 8.4818 16 1 4.7855 -7.1523 9.6406 17 1 5.6826 -7.8438 7.4961 18 6 2.8490 -1.9719 -0.6331 19 1 3.9232 -1.7879 -0.6137 20 6 2.4946 -3.2072 -1.4775 21 6 1.4988 -2.7001 -2.5711 22 6 0.8731 -1.4206 -1.9639 23 6 2.0645 -0.7695 -1.2229 24 1 2.6792 -0.1454 -1.8716 25 1 -0.3633 0.6264 0.8147 26 1 -0.3634 0.3922 -0.9498 27 1 -0.3634 -1.0187 0.1352 28 1 3.1499 1.4201 -0.0113 29 1 1.6947 1.9575 -0.8843 30 1 1.7131 1.9506 0.8955 31 1 1.3265 -0.7688 2.0275 32 1 3.0015 -0.3294 1.5715 33 1 3.5803 -3.7714 1.0881 34 1 4.0933 -2.2283 1.8119 35 1 2.2023 -2.3500 3.4114 36 1 1.6894 -3.8931 2.6876 37 1 3.8709 -4.9032 3.2967 38 1 4.3833 -3.3598 4.0203 39 1 2.5346 -6.0675 8.9160 40 1 3.3972 -3.6258 -1.9228 41 1 2.0036 -3.9556 -0.8556 42 1 0.7288 -3.4474 -2.7626 43 1 2.0380 -2.4628 -3.4882 44 1 0.0768 -1.6753 -1.2646 45 1 0.5017 -0.7628 -2.7497 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339719408.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:24 Heat of formation + Delta-G solvation = -21.071151 kcal Electronic energy + Delta-G solvation = -20598.560734 eV Core-core repulsion = 17740.847114 eV Total energy + Delta-G solvation = -2857.713620 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.167 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.61053 -35.72592 -34.90428 -32.43259 -32.17184 -28.42091 -27.80826 -26.97708 -26.48086 -25.51757 -23.51863 -20.92629 -20.59236 -19.92532 -18.74853 -17.39845 -16.32426 -15.83664 -15.01393 -14.78625 -14.64328 -14.33687 -13.98796 -13.72115 -13.69725 -13.45618 -13.17964 -12.80113 -12.36057 -12.04661 -11.95158 -11.71428 -11.56897 -11.39808 -11.18860 -11.15339 -11.03505 -10.92097 -10.77167 -10.70299 -10.60442 -10.50920 -10.34096 -10.27107 -10.19256 -9.48148 -9.02479 -8.41465 -8.26258 -6.49033 -6.19865 -3.89733 3.23479 3.24850 3.29372 3.58256 4.02451 4.24996 4.26516 4.33623 4.59766 4.87051 4.94301 5.01012 5.15554 5.16440 5.28431 5.31597 5.38459 5.42020 5.42255 5.47005 5.52678 5.58237 5.61078 5.69915 5.74549 5.77174 5.81261 5.85724 5.86832 5.90924 5.94257 5.98315 6.05386 6.08386 6.16911 6.17913 6.26209 6.40978 6.41970 6.64607 6.81670 7.00326 7.16837 7.62851 8.39196 9.26154 10.88300 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.030509 B = 0.003091 C = 0.002970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.539703 B = 9057.071174 C = 9426.065609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.066 4.066 3 C -0.139 4.139 4 C 0.040 3.960 5 N -0.500 5.500 6 C 0.049 3.951 7 C -0.089 4.089 8 C -0.112 4.112 9 S -0.132 6.132 10 C -0.517 4.517 11 H 0.071 0.929 12 C 0.071 3.929 13 N -0.870 5.870 14 Si 0.918 3.082 15 H -0.274 1.274 16 H -0.283 1.283 17 H -0.274 1.274 18 C 0.059 3.941 19 H 0.053 0.947 20 C -0.113 4.113 21 C -0.121 4.121 22 C -0.121 4.121 23 C -0.084 4.084 24 H 0.081 0.919 25 H 0.050 0.950 26 H 0.054 0.946 27 H 0.069 0.931 28 H 0.052 0.948 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.083 0.917 32 H 0.043 0.957 33 H 0.071 0.929 34 H 0.033 0.967 35 H 0.062 0.938 36 H 0.072 0.928 37 H 0.059 0.941 38 H 0.056 0.944 39 H 0.267 0.733 40 H 0.059 0.941 41 H 0.078 0.922 42 H 0.063 0.937 43 H 0.057 0.943 44 H 0.088 0.912 45 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.216 11.555 -20.816 23.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.066 4.066 3 C -0.197 4.197 4 C -0.088 4.088 5 N -0.224 5.224 6 C -0.080 4.080 7 C -0.128 4.128 8 C -0.262 4.262 9 S 0.096 5.904 10 C -0.665 4.665 11 H 0.089 0.911 12 C -0.138 4.138 13 N -0.506 5.506 14 Si 0.744 3.256 15 H -0.200 1.200 16 H -0.208 1.208 17 H -0.199 1.199 18 C -0.050 4.050 19 H 0.071 0.929 20 C -0.151 4.151 21 C -0.159 4.159 22 C -0.158 4.158 23 C -0.103 4.103 24 H 0.100 0.900 25 H 0.069 0.931 26 H 0.073 0.927 27 H 0.088 0.912 28 H 0.071 0.929 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.102 0.898 32 H 0.061 0.939 33 H 0.090 0.910 34 H 0.051 0.949 35 H 0.081 0.919 36 H 0.091 0.909 37 H 0.078 0.922 38 H 0.075 0.925 39 H 0.077 0.923 40 H 0.078 0.922 41 H 0.097 0.903 42 H 0.081 0.919 43 H 0.076 0.924 44 H 0.107 0.893 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -3.875 11.366 -20.277 23.566 hybrid contribution 3.103 -0.351 0.323 3.140 sum -0.772 11.016 -19.954 22.806 Atomic orbital electron populations 1.21979 0.93870 1.02232 1.01111 1.21275 0.96231 0.94548 0.94574 1.21886 1.00587 0.95406 1.01779 1.23255 1.00097 0.88422 0.96984 1.65385 1.41539 1.14150 1.01315 1.22352 0.93290 0.98110 0.94283 1.21190 0.98285 1.00397 0.92903 1.23240 1.00999 1.01292 1.00635 1.84621 1.21041 1.73486 1.11221 1.22658 0.98143 1.41609 1.04091 0.91085 1.25010 0.96546 0.95842 0.96391 1.70021 1.22140 1.43523 1.14887 0.86230 0.81241 0.79663 0.78431 1.19978 1.20820 1.19940 1.23210 0.96503 0.95220 0.90069 0.92860 1.22478 0.98660 0.97274 0.96656 1.22674 0.98145 0.97490 0.97604 1.22748 0.97953 0.95884 0.99181 1.22712 0.96536 0.95198 0.95874 0.90026 0.93081 0.92712 0.91197 0.92884 0.92604 0.92466 0.89840 0.93910 0.91008 0.94903 0.91879 0.90884 0.92237 0.92489 0.92285 0.92234 0.90348 0.91852 0.92405 0.89342 0.92271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.21 7.07 37.16 0.26 -0.95 16 2 C -0.07 -0.62 1.01 -153.26 -0.16 -0.78 16 3 C -0.14 -1.16 8.30 37.16 0.31 -0.85 16 4 C 0.04 0.47 4.97 -2.27 -0.01 0.46 16 5 N -0.50 -6.28 4.75 -221.38 -1.05 -7.33 16 6 C 0.05 0.70 4.79 -3.82 -0.02 0.68 16 7 C -0.09 -1.52 5.33 -26.73 -0.14 -1.66 16 8 C -0.11 -2.34 5.67 37.16 0.21 -2.13 16 9 S -0.13 -3.53 21.44 -107.50 -2.30 -5.84 16 10 C -0.52 -15.10 9.50 30.94 0.29 -14.80 16 11 H 0.07 2.01 7.80 -52.49 -0.41 1.60 16 12 C 0.07 2.05 5.49 -17.43 -0.10 1.95 16 13 N -0.87 -26.35 13.22 55.49 0.73 -25.62 16 14 Si 0.92 21.81 29.55 -169.99 -5.02 16.78 16 15 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 16 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 17 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 18 C 0.06 0.64 3.04 -65.30 -0.20 0.44 16 19 H 0.05 0.59 8.00 -51.93 -0.42 0.18 16 20 C -0.11 -1.15 6.54 -24.53 -0.16 -1.31 16 21 C -0.12 -1.06 6.88 -23.97 -0.16 -1.23 16 22 C -0.12 -1.05 5.01 -24.89 -0.12 -1.18 16 23 C -0.08 -0.79 3.49 -88.02 -0.31 -1.09 16 24 H 0.08 0.71 7.83 -51.93 -0.41 0.30 16 25 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 26 H 0.05 0.43 7.38 -51.93 -0.38 0.05 16 27 H 0.07 0.70 6.49 -51.93 -0.34 0.36 16 28 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.08 1.05 7.56 -51.93 -0.39 0.65 16 32 H 0.04 0.52 7.49 -51.93 -0.39 0.13 16 33 H 0.07 1.00 7.96 -51.93 -0.41 0.59 16 34 H 0.03 0.46 7.78 -51.93 -0.40 0.06 16 35 H 0.06 1.10 7.44 -51.93 -0.39 0.71 16 36 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 37 H 0.06 1.23 8.14 -51.92 -0.42 0.80 16 38 H 0.06 1.18 8.14 -51.92 -0.42 0.75 16 39 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 40 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.08 0.92 7.88 -51.93 -0.41 0.51 16 42 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.09 0.85 5.18 -51.93 -0.27 0.58 16 45 H 0.06 0.45 8.13 -51.93 -0.42 0.03 16 LS Contribution 354.01 15.07 5.33 5.33 Total: -1.00 -30.44 354.01 -11.01 -41.45 By element: Atomic # 1 Polarization: 6.07 SS G_CDS: -8.40 Total: -2.33 kcal Atomic # 6 Polarization: -22.14 SS G_CDS: -0.30 Total: -22.45 kcal Atomic # 7 Polarization: -32.64 SS G_CDS: -0.32 Total: -32.95 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.78 kcal Atomic # 16 Polarization: -3.53 SS G_CDS: -2.30 Total: -5.84 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -30.44 -11.01 -41.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339719408.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.377 kcal (2) G-P(sol) polarization free energy of solvation -30.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds