Wall clock time and date at job start Tue Mar 31 2020 06:34:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08994 * 109.47155 * 2 1 4 4 C 1.53001 * 109.47353 * 120.00306 * 2 1 3 5 5 C 1.50692 * 109.47211 * 182.92771 * 4 2 1 6 6 H 1.08002 * 120.00201 * 355.11672 * 5 4 2 7 7 C 1.37884 * 120.00167 * 175.12267 * 5 4 2 8 8 N 1.31514 * 119.99450 * 0.02562 * 7 5 4 9 9 Si 1.86792 * 120.00325 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.47258 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47231 * 119.99658 * 9 7 5 12 12 H 1.48499 * 109.46997 * 240.00374 * 9 7 5 13 13 N 1.46900 * 109.46915 * 239.99959 * 2 1 3 14 14 C 1.46905 * 111.00158 * 72.78166 * 13 2 1 15 15 C 1.46901 * 111.00341 * 308.82754 * 13 2 1 16 16 C 1.50703 * 109.47001 * 189.99891 * 15 13 2 17 17 C 1.39378 * 119.50465 * 269.72128 * 16 15 13 18 18 C 1.36086 * 120.98573 * 179.72976 * 17 16 15 19 19 C 1.40542 * 119.65450 * 0.56754 * 18 17 16 20 20 C 1.40542 * 121.28332 * 179.71897 * 19 18 17 21 21 C 1.36089 * 119.65651 * 180.02562 * 20 19 18 22 22 C 1.39378 * 120.98389 * 359.95600 * 21 20 19 23 23 C 1.36089 * 120.99310 * 0.02562 * 22 21 20 24 24 C 1.40542 * 119.65178 * 359.97438 * 23 22 21 25 25 C 1.36091 * 119.50604 * 90.00166 * 16 15 13 26 26 H 1.08992 * 109.46620 * 299.99967 * 1 2 3 27 27 H 1.08997 * 109.47249 * 59.99811 * 1 2 3 28 28 H 1.09006 * 109.46822 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46723 * 302.93099 * 4 2 1 30 30 H 1.08999 * 109.46978 * 62.92400 * 4 2 1 31 31 H 0.97005 * 119.99729 * 180.02562 * 8 7 5 32 32 H 1.09000 * 109.46962 * 289.85735 * 14 13 2 33 33 H 1.09001 * 109.46962 * 49.85017 * 14 13 2 34 34 H 1.08996 * 109.47669 * 169.84741 * 14 13 2 35 35 H 1.08997 * 109.46962 * 310.00208 * 15 13 2 36 36 H 1.09000 * 109.46936 * 69.99763 * 15 13 2 37 37 H 1.07998 * 119.50649 * 0.02562 * 17 16 15 38 38 H 1.08003 * 120.17674 * 180.28416 * 18 17 16 39 39 H 1.08006 * 120.17031 * 0.02640 * 20 19 18 40 40 H 1.08001 * 119.50812 * 179.97438 * 21 20 19 41 41 H 1.07996 * 119.50177 * 180.02562 * 22 21 20 42 42 H 1.08001 * 120.17608 * 179.97438 * 23 22 21 43 43 H 1.08005 * 120.16926 * 359.97438 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5453 -0.6588 1.2860 6 1 4.0881 -0.2249 0.4592 7 6 4.2296 -1.1556 2.3751 8 7 3.5685 -1.6845 3.3815 9 14 6.0953 -1.0787 2.4204 10 1 6.5950 -0.4431 1.1747 11 1 6.5295 -0.2784 3.5935 12 1 6.6449 -2.4540 2.5285 13 7 2.0197 -0.6925 -1.1994 14 6 1.8124 0.1261 -2.4015 15 6 1.3845 -2.0093 -1.3433 16 6 2.0803 -2.7865 -2.4309 17 6 1.6264 -2.6854 -3.7448 18 6 2.2356 -3.3695 -4.7512 19 6 3.3317 -4.2005 -4.4630 20 6 3.9826 -4.9271 -5.4747 21 6 5.0407 -5.7223 -5.1583 22 6 5.4912 -5.8277 -3.8436 23 6 4.8859 -5.1388 -2.8381 24 6 3.7901 -4.3073 -3.1263 25 6 3.1390 -3.5810 -2.1146 26 1 -0.3632 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.6345 -0.2387 2.1384 30 1 1.7202 -1.7630 1.2233 31 1 4.0499 -2.0337 4.1479 32 1 0.7471 0.1779 -2.6266 33 1 2.1961 1.1314 -2.2271 34 1 2.3401 -0.3233 -3.2427 35 1 1.4601 -2.5539 -0.4022 36 1 0.3342 -1.8794 -1.6046 37 1 0.7815 -2.0509 -3.9683 38 1 1.8757 -3.2780 -5.7654 39 1 3.6449 -4.8546 -6.4981 40 1 5.5388 -6.2799 -5.9377 41 1 6.3333 -6.4656 -3.6195 42 1 5.2457 -5.2305 -1.8239 43 1 3.4771 -3.6528 -1.0913 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000351646949.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:26 Heat of formation + Delta-G solvation = 40.013489 kcal Electronic energy + Delta-G solvation = -21996.291640 eV Core-core repulsion = 19005.782897 eV Total energy + Delta-G solvation = -2990.508742 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.163 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.23914 -38.14736 -36.11818 -32.97541 -32.57021 -31.25551 -29.87461 -29.28162 -27.28080 -26.49677 -24.31619 -23.08935 -22.59810 -21.75214 -21.44312 -18.75817 -17.21243 -16.72902 -16.18040 -15.98096 -14.95361 -14.70690 -14.43881 -14.32271 -14.10919 -13.62036 -13.31750 -13.24422 -13.06858 -12.86223 -12.21761 -12.16334 -11.91165 -11.67678 -11.57023 -11.42042 -11.08133 -10.96140 -10.80183 -10.72501 -10.59779 -10.46125 -10.35013 -9.97733 -9.72012 -9.19196 -8.95431 -8.36478 -8.24693 -7.67643 -7.45880 -5.88220 -3.85476 0.73262 1.17495 2.26275 3.14290 3.37956 3.45950 3.52387 4.26653 4.57193 4.74113 4.77593 4.95593 5.00688 5.10721 5.20173 5.42139 5.47012 5.48768 5.56494 5.59717 5.68895 5.74222 5.80764 5.86009 5.97965 6.01385 6.09413 6.13167 6.22048 6.28548 6.32780 6.42581 6.46430 6.53284 6.58573 6.64967 6.73408 6.97913 7.01726 7.03151 7.21460 7.54069 7.67003 7.89692 8.02210 8.13599 8.60430 9.22131 9.76456 11.23751 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.013523 B = 0.005687 C = 0.004289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2070.039073 B = 4922.425344 C = 6526.517138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.085 3.915 3 H 0.071 0.929 4 C 0.030 3.970 5 C -0.487 4.487 6 H 0.062 0.938 7 C 0.050 3.950 8 N -0.904 5.904 9 Si 0.885 3.115 10 H -0.273 1.273 11 H -0.288 1.288 12 H -0.287 1.287 13 N -0.508 5.508 14 C 0.023 3.977 15 C 0.091 3.909 16 C -0.067 4.067 17 C -0.101 4.101 18 C -0.121 4.121 19 C -0.054 4.054 20 C -0.111 4.111 21 C -0.122 4.122 22 C -0.128 4.128 23 C -0.097 4.097 24 C -0.051 4.051 25 C -0.077 4.077 26 H 0.056 0.944 27 H 0.039 0.961 28 H 0.052 0.948 29 H 0.022 0.978 30 H 0.014 0.986 31 H 0.256 0.744 32 H 0.015 0.985 33 H 0.060 0.940 34 H 0.060 0.940 35 H 0.094 0.906 36 H 0.034 0.966 37 H 0.116 0.884 38 H 0.121 0.879 39 H 0.121 0.879 40 H 0.117 0.883 41 H 0.119 0.881 42 H 0.128 0.872 43 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.911 -5.017 -16.256 17.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.023 4.023 3 H 0.089 0.911 4 C -0.007 4.007 5 C -0.526 4.526 6 H 0.081 0.919 7 C -0.149 4.149 8 N -0.545 5.545 9 Si 0.714 3.286 10 H -0.197 1.197 11 H -0.214 1.214 12 H -0.213 1.213 13 N -0.230 5.230 14 C -0.126 4.126 15 C -0.036 4.036 16 C -0.067 4.067 17 C -0.119 4.119 18 C -0.139 4.139 19 C -0.054 4.054 20 C -0.129 4.129 21 C -0.140 4.140 22 C -0.146 4.146 23 C -0.115 4.115 24 C -0.051 4.051 25 C -0.096 4.096 26 H 0.075 0.925 27 H 0.058 0.942 28 H 0.071 0.929 29 H 0.040 0.960 30 H 0.033 0.967 31 H 0.066 0.934 32 H 0.033 0.967 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.112 0.888 36 H 0.052 0.948 37 H 0.134 0.866 38 H 0.139 0.861 39 H 0.139 0.861 40 H 0.135 0.865 41 H 0.137 0.863 42 H 0.146 0.854 43 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -2.374 -5.148 -16.026 16.999 hybrid contribution 0.217 0.164 -0.003 0.272 sum -2.158 -4.983 -16.029 16.924 Atomic orbital electron populations 1.22532 0.99713 1.01309 1.00710 1.21988 0.90080 0.98325 0.91881 0.91111 1.19201 0.96491 0.95037 0.89991 1.21229 0.91521 1.37372 1.02478 0.91929 1.25000 0.97858 0.96081 0.95930 1.69975 1.34964 1.41716 1.07855 0.86628 0.86697 0.77485 0.77770 1.19741 1.21414 1.21343 1.62125 1.57355 1.01604 1.01955 1.22431 0.97993 0.98059 0.94073 1.21140 0.93879 0.91083 0.97533 1.19601 0.96313 0.96649 0.94166 1.20792 0.99707 0.98855 0.92550 1.20868 0.96148 0.97881 0.98984 1.18059 0.96466 0.97971 0.92910 1.20955 0.96457 0.97228 0.98272 1.20770 0.97321 0.99459 0.96478 1.20789 1.00404 1.00407 0.92992 1.21146 0.94937 0.95654 0.99752 1.18169 0.96273 0.97704 0.92937 1.21106 0.94292 0.94824 0.99340 0.92489 0.94209 0.92867 0.95981 0.96747 0.93419 0.96708 0.92096 0.92113 0.88758 0.94843 0.86585 0.86118 0.86105 0.86492 0.86326 0.85402 0.84569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.09 8.41 37.16 0.31 -2.78 16 2 C 0.08 1.70 2.27 -67.71 -0.15 1.55 16 3 H 0.07 1.45 7.87 -51.93 -0.41 1.04 16 4 C 0.03 0.74 4.40 -27.89 -0.12 0.62 16 5 C -0.49 -13.47 8.80 -34.44 -0.30 -13.77 16 6 H 0.06 1.75 7.69 -52.49 -0.40 1.35 16 7 C 0.05 1.44 5.46 -17.82 -0.10 1.34 16 8 N -0.90 -26.94 13.29 55.43 0.74 -26.21 16 9 Si 0.89 21.99 29.54 -169.99 -5.02 16.97 16 10 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 12 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 13 N -0.51 -9.54 4.30 -236.33 -1.02 -10.55 16 14 C 0.02 0.36 8.63 60.07 0.52 0.88 16 15 C 0.09 1.57 3.95 -4.97 -0.02 1.55 16 16 C -0.07 -1.08 4.84 -104.97 -0.51 -1.59 16 17 C -0.10 -1.40 8.01 -39.93 -0.32 -1.72 16 18 C -0.12 -1.57 9.77 -39.49 -0.39 -1.95 16 19 C -0.05 -0.76 5.74 -106.83 -0.61 -1.38 16 20 C -0.11 -1.33 9.77 -39.49 -0.39 -1.71 16 21 C -0.12 -1.38 9.95 -39.93 -0.40 -1.78 16 22 C -0.13 -1.55 9.95 -39.93 -0.40 -1.95 16 23 C -0.10 -1.37 9.77 -39.49 -0.39 -1.76 16 24 C -0.05 -0.80 5.74 -106.84 -0.61 -1.41 16 25 C -0.08 -1.31 9.37 -39.49 -0.37 -1.68 16 26 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.04 0.59 7.02 -51.93 -0.36 0.23 16 28 H 0.05 0.88 6.54 -51.93 -0.34 0.54 16 29 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.01 0.38 6.36 -51.93 -0.33 0.05 16 31 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 32 H 0.01 0.21 7.09 -51.93 -0.37 -0.16 16 33 H 0.06 0.94 7.89 -51.93 -0.41 0.53 16 34 H 0.06 0.93 6.58 -51.93 -0.34 0.59 16 35 H 0.09 1.84 6.10 -51.93 -0.32 1.52 16 36 H 0.03 0.53 6.70 -51.93 -0.35 0.18 16 37 H 0.12 1.40 8.03 -52.49 -0.42 0.98 16 38 H 0.12 1.23 8.06 -52.48 -0.42 0.80 16 39 H 0.12 1.13 8.06 -52.48 -0.42 0.71 16 40 H 0.12 1.01 8.06 -52.49 -0.42 0.58 16 41 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 42 H 0.13 1.70 8.06 -52.49 -0.42 1.28 16 43 H 0.14 2.48 8.06 -52.48 -0.42 2.06 16 LS Contribution 344.08 15.07 5.19 5.19 Total: -1.00 -30.28 344.08 -10.93 -41.20 By element: Atomic # 1 Polarization: 7.51 SS G_CDS: -6.57 Total: 0.94 kcal Atomic # 6 Polarization: -23.30 SS G_CDS: -4.24 Total: -27.54 kcal Atomic # 7 Polarization: -36.48 SS G_CDS: -0.28 Total: -36.76 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -30.28 -10.93 -41.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351646949.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.218 kcal (2) G-P(sol) polarization free energy of solvation -30.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.204 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds