Wall clock time and date at job start Tue Mar 31 2020 05:22:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34228 * 116.99572 * 2 1 4 4 O 1.20829 * 120.00573 * 0.02562 * 3 2 1 5 5 C 1.50705 * 120.00150 * 179.97438 * 3 2 1 6 6 H 1.08994 * 109.46890 * 60.00186 * 5 3 2 7 7 C 1.53004 * 109.46854 * 300.00645 * 5 3 2 8 8 C 1.53002 * 109.46683 * 179.97438 * 7 5 3 9 9 C 1.52993 * 109.47184 * 60.00074 * 8 7 5 10 10 C 1.52998 * 109.47306 * 299.99891 * 9 8 7 11 11 H 1.09001 * 109.47388 * 180.02562 * 10 9 8 12 12 C 1.50700 * 109.46852 * 300.00006 * 10 9 8 13 13 O 1.21286 * 119.99815 * 107.11551 * 12 10 9 14 14 N 1.34777 * 120.00300 * 287.11392 * 12 10 9 15 15 C 1.46505 * 119.99862 * 4.02064 * 14 12 10 16 16 C 1.46501 * 120.00177 * 184.02879 * 14 12 10 17 17 C 1.50702 * 109.46736 * 269.99456 * 16 14 12 18 18 H 1.08006 * 119.99991 * 0.02562 * 17 16 14 19 19 C 1.37880 * 120.00127 * 179.97438 * 17 16 14 20 20 N 1.31511 * 119.99427 * 0.27944 * 19 17 16 21 21 Si 1.86797 * 120.00024 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47174 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.47027 * 120.00301 * 21 19 17 24 24 H 1.48498 * 109.47268 * 239.99958 * 21 19 17 25 25 C 1.52993 * 109.47315 * 180.02562 * 5 3 2 26 26 H 1.09005 * 109.47549 * 59.99741 * 1 2 3 27 27 H 1.09007 * 109.46805 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.47428 * 299.99239 * 1 2 3 29 29 H 1.09001 * 109.47008 * 60.00079 * 7 5 3 30 30 H 1.08994 * 109.46997 * 299.99475 * 7 5 3 31 31 H 1.09003 * 109.47230 * 299.99847 * 8 7 5 32 32 H 1.09004 * 109.46471 * 180.02562 * 8 7 5 33 33 H 1.09006 * 109.47049 * 179.97438 * 9 8 7 34 34 H 1.09003 * 109.47223 * 59.99769 * 9 8 7 35 35 H 1.08992 * 109.47146 * 264.51012 * 15 14 12 36 36 H 1.09004 * 109.46759 * 24.51166 * 15 14 12 37 37 H 1.08994 * 109.46814 * 144.50465 * 15 14 12 38 38 H 1.09001 * 109.46979 * 150.00282 * 16 14 12 39 39 H 1.08994 * 109.47079 * 29.99133 * 16 14 12 40 40 H 0.96995 * 120.00617 * 359.72733 * 20 19 17 41 41 H 1.09003 * 109.47223 * 60.00059 * 25 5 3 42 42 H 1.08993 * 109.47295 * 300.00136 * 25 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2094 0.0005 5 6 3.5663 1.2751 0.0006 6 1 3.9563 0.7808 -0.8891 7 6 4.1128 0.5816 1.2502 8 6 5.6408 0.6613 1.2504 9 6 6.0750 2.1283 1.2501 10 6 5.5284 2.8218 0.0006 11 1 5.8381 3.8669 0.0002 12 6 6.0673 2.1382 -1.2295 13 8 5.3395 1.4398 -1.9031 14 7 7.3579 2.3028 -1.5813 15 6 8.2589 3.0739 -0.7210 16 6 7.8597 1.7110 -2.8239 17 6 8.3749 0.3222 -2.5465 18 1 8.3323 -0.0795 -1.5448 19 6 8.8996 -0.4360 -3.5716 20 7 8.9556 0.0549 -4.7904 21 14 9.5375 -2.1577 -3.2278 22 1 9.3668 -2.4702 -1.7862 23 1 8.7751 -3.1394 -4.0404 24 1 10.9773 -2.2325 -3.5839 25 6 4.0000 2.7422 0.0011 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5137 0.8900 29 1 3.8039 -0.4637 1.2501 30 1 3.7228 1.0758 2.1399 31 1 6.0306 0.1668 0.3606 32 1 6.0302 0.1669 2.1404 33 1 7.1635 2.1851 1.2507 34 1 5.6852 2.6228 2.1399 35 1 8.3092 4.1028 -1.0771 36 1 7.8833 3.0614 0.3022 37 1 9.2544 2.6309 -0.7480 38 1 8.6682 2.3262 -3.2187 39 1 7.0521 1.6598 -3.5540 40 1 8.6241 0.9488 -4.9689 41 1 3.6099 3.2361 0.8911 42 1 3.6106 3.2365 -0.8888 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360099178.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:38 Heat of formation + Delta-G solvation = -132.365580 kcal Electronic energy + Delta-G solvation = -23746.331855 eV Core-core repulsion = 20305.206181 eV Total energy + Delta-G solvation = -3441.125674 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.84951 -39.74376 -37.03279 -36.20950 -35.03749 -32.98016 -31.42166 -30.77433 -27.85860 -27.34785 -25.92751 -23.85100 -23.61604 -22.24275 -20.98991 -20.15406 -18.36826 -17.37572 -16.92394 -16.85389 -16.31881 -15.83895 -15.42061 -15.00168 -14.75503 -13.93367 -13.75383 -13.73455 -13.31970 -13.11097 -12.81114 -12.51408 -12.44332 -12.34105 -12.03026 -11.98078 -11.86583 -11.63781 -11.27040 -11.01807 -10.92492 -10.77825 -10.72243 -10.58594 -10.43222 -10.14295 -10.10248 -9.96564 -9.11623 -8.70613 -8.38683 -7.63703 -6.38746 -4.10839 2.34554 2.81795 3.29774 3.42816 3.47666 3.59843 3.84778 4.52512 4.60995 4.75204 4.79039 5.01776 5.04954 5.11347 5.21324 5.22293 5.29083 5.37148 5.41035 5.46185 5.49802 5.56688 5.70941 5.77086 5.84028 5.92988 6.01186 6.05251 6.15879 6.29345 6.33243 6.36758 6.47228 6.56598 6.79968 7.10975 7.38996 7.86386 8.03111 8.27413 8.43537 8.77464 8.99485 9.59008 10.98620 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.017827 B = 0.005093 C = 0.004572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1570.253674 B = 5495.972377 C = 6122.293896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.357 6.357 3 C 0.470 3.530 4 O -0.518 6.518 5 C -0.103 4.103 6 H 0.157 0.843 7 C -0.103 4.103 8 C -0.123 4.123 9 C -0.117 4.117 10 C -0.110 4.110 11 H 0.093 0.907 12 C 0.512 3.488 13 O -0.538 6.538 14 N -0.595 5.595 15 C 0.070 3.930 16 C 0.234 3.766 17 C -0.603 4.603 18 H 0.052 0.948 19 C 0.019 3.981 20 N -0.911 5.911 21 Si 1.076 2.924 22 H -0.290 1.290 23 H -0.286 1.286 24 H -0.287 1.287 25 C -0.076 4.076 26 H 0.061 0.939 27 H 0.098 0.902 28 H 0.059 0.941 29 H 0.074 0.926 30 H 0.060 0.940 31 H 0.077 0.923 32 H 0.068 0.932 33 H 0.079 0.921 34 H 0.071 0.929 35 H 0.044 0.956 36 H 0.073 0.927 37 H 0.071 0.929 38 H 0.020 0.980 39 H 0.032 0.968 40 H 0.268 0.732 41 H 0.071 0.929 42 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.020 4.094 14.339 17.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.274 6.274 3 C 0.315 3.685 4 O -0.407 6.407 5 C -0.121 4.121 6 H 0.173 0.827 7 C -0.141 4.141 8 C -0.160 4.160 9 C -0.154 4.154 10 C -0.132 4.132 11 H 0.111 0.889 12 C 0.299 3.701 13 O -0.416 6.416 14 N -0.326 5.326 15 C -0.073 4.073 16 C 0.115 3.885 17 C -0.641 4.641 18 H 0.071 0.929 19 C -0.185 4.185 20 N -0.548 5.548 21 Si 0.904 3.096 22 H -0.216 1.216 23 H -0.212 1.212 24 H -0.214 1.214 25 C -0.114 4.114 26 H 0.079 0.921 27 H 0.117 0.883 28 H 0.078 0.922 29 H 0.092 0.908 30 H 0.079 0.921 31 H 0.096 0.904 32 H 0.087 0.913 33 H 0.097 0.903 34 H 0.089 0.911 35 H 0.062 0.938 36 H 0.091 0.909 37 H 0.090 0.910 38 H 0.038 0.962 39 H 0.050 0.950 40 H 0.078 0.922 41 H 0.089 0.911 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -8.906 2.698 13.256 16.196 hybrid contribution -0.858 1.519 0.695 1.878 sum -9.764 4.217 13.951 17.543 Atomic orbital electron populations 1.23217 0.77088 1.03412 1.02246 1.86554 1.22854 1.33882 1.84094 1.24136 0.92351 0.80927 0.71125 1.90610 1.67477 1.36441 1.46153 1.21723 0.85762 0.99906 1.04737 0.82658 1.21452 0.96242 1.00820 0.95547 1.21570 0.94831 0.96387 1.03255 1.21727 1.01312 0.96174 0.96181 1.21403 0.96311 1.00747 0.94690 0.88854 1.20284 0.82211 0.81600 0.85989 1.90478 1.57093 1.39661 1.54402 1.47940 1.08556 1.51700 1.24393 1.21945 0.95691 0.95087 0.94611 1.19345 0.94189 0.93723 0.81280 1.22270 1.44223 1.00213 0.97428 0.92927 1.25791 0.95112 1.04828 0.92754 1.70738 1.44354 1.18788 1.20891 0.83445 0.76431 0.74708 0.74977 1.21572 1.21242 1.21358 1.21146 0.92998 0.94179 1.03043 0.92063 0.88313 0.92219 0.90762 0.92140 0.90412 0.91335 0.90287 0.91069 0.93773 0.90916 0.90980 0.96204 0.94967 0.92187 0.91052 0.90873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 10.56 101.05 1.07 1.43 16 2 O -0.36 -5.14 10.47 -39.25 -0.41 -5.55 16 3 C 0.47 7.44 7.26 36.01 0.26 7.70 16 4 O -0.52 -9.01 15.73 -18.75 -0.29 -9.31 16 5 C -0.10 -1.60 2.34 -91.77 -0.21 -1.82 16 6 H 0.16 2.94 5.08 -51.93 -0.26 2.68 16 7 C -0.10 -1.35 5.14 -26.73 -0.14 -1.48 16 8 C -0.12 -1.66 5.70 -26.73 -0.15 -1.81 16 9 C -0.12 -1.42 5.12 -26.74 -0.14 -1.56 16 10 C -0.11 -1.57 2.18 -91.75 -0.20 -1.77 16 11 H 0.09 1.14 7.70 -51.93 -0.40 0.74 16 12 C 0.51 10.06 5.56 -10.99 -0.06 10.00 16 13 O -0.54 -12.60 12.90 5.55 0.07 -12.53 16 14 N -0.59 -12.19 2.86 -182.95 -0.52 -12.71 16 15 C 0.07 1.08 9.97 59.85 0.60 1.67 16 16 C 0.23 5.98 4.47 -5.19 -0.02 5.96 16 17 C -0.60 -16.87 9.39 -34.44 -0.32 -17.19 16 18 H 0.05 1.48 7.81 -52.48 -0.41 1.07 16 19 C 0.02 0.55 5.46 -17.82 -0.10 0.46 16 20 N -0.91 -27.62 13.65 55.43 0.76 -26.87 16 21 Si 1.08 25.45 29.90 -169.99 -5.08 20.37 16 22 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 23 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 24 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 25 C -0.08 -1.11 3.78 -26.71 -0.10 -1.21 16 26 H 0.06 0.65 8.13 -51.93 -0.42 0.23 16 27 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.06 0.58 8.13 -51.93 -0.42 0.16 16 29 H 0.07 0.95 8.11 -51.93 -0.42 0.52 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.08 1.34 7.21 -51.93 -0.37 0.97 16 32 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 33 H 0.08 0.93 5.39 -51.93 -0.28 0.66 16 34 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.07 0.89 3.95 -51.93 -0.21 0.69 16 37 H 0.07 1.16 8.11 -51.93 -0.42 0.74 16 38 H 0.02 0.51 7.93 -51.93 -0.41 0.10 16 39 H 0.03 0.92 7.35 -51.93 -0.38 0.54 16 40 H 0.27 8.07 7.22 -40.82 -0.29 7.78 16 41 H 0.07 0.92 8.10 -51.93 -0.42 0.50 16 42 H 0.07 1.18 8.10 -51.93 -0.42 0.76 16 LS Contribution 332.78 15.07 5.01 5.01 Total: -1.00 -33.84 332.78 -6.45 -40.29 By element: Atomic # 1 Polarization: 7.37 SS G_CDS: -6.46 Total: 0.91 kcal Atomic # 6 Polarization: -0.10 SS G_CDS: 0.48 Total: 0.38 kcal Atomic # 7 Polarization: -39.81 SS G_CDS: 0.23 Total: -39.58 kcal Atomic # 8 Polarization: -26.76 SS G_CDS: -0.63 Total: -27.39 kcal Atomic # 14 Polarization: 25.45 SS G_CDS: -5.08 Total: 20.37 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -33.84 -6.45 -40.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360099178.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.075 kcal (2) G-P(sol) polarization free energy of solvation -33.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds