Wall clock time and date at job start Tue Mar 31 2020 07:08:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 120.00645 * 2 1 4 4 H 1.48492 * 109.47256 * 240.00059 * 3 2 1 5 5 H 1.48503 * 109.46819 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47158 * 119.99690 * 3 2 1 7 7 C 1.37887 * 119.99493 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99631 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00079 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47055 * 179.97438 * 9 7 2 11 11 C 1.50706 * 109.47238 * 179.97438 * 10 9 7 12 12 O 1.21279 * 119.99507 * 0.02562 * 11 10 9 13 13 N 1.34774 * 120.00020 * 180.02562 * 11 10 9 14 14 C 1.46496 * 119.99544 * 180.02562 * 13 11 10 15 15 H 1.08997 * 109.48050 * 34.99853 * 14 13 11 16 16 C 1.53003 * 109.47378 * 274.99692 * 14 13 11 17 17 C 1.53000 * 109.46881 * 65.00200 * 16 14 13 18 18 O 1.42897 * 109.47043 * 180.02562 * 17 16 14 19 19 C 1.53010 * 109.47076 * 155.00017 * 14 13 11 20 20 C 1.53006 * 109.46569 * 59.99653 * 19 14 13 21 21 C 1.53001 * 109.46533 * 179.97438 * 20 19 14 22 22 C 1.53005 * 109.47143 * 60.00250 * 21 20 19 23 23 C 1.52998 * 109.46914 * 299.99871 * 22 21 20 24 24 C 1.52992 * 109.47060 * 299.99934 * 19 14 13 25 25 H 0.96999 * 119.99718 * 0.02562 * 1 2 3 26 26 H 1.09001 * 109.47328 * 59.99861 * 9 7 2 27 27 H 1.09004 * 109.47043 * 299.99672 * 9 7 2 28 28 H 1.09001 * 109.46832 * 59.99966 * 10 9 7 29 29 H 1.09000 * 109.47611 * 300.00263 * 10 9 7 30 30 H 0.96994 * 119.99756 * 0.02562 * 13 11 10 31 31 H 1.08991 * 109.47562 * 185.00556 * 16 14 13 32 32 H 1.09004 * 109.47347 * 305.00627 * 16 14 13 33 33 H 1.09001 * 109.47271 * 300.00478 * 17 16 14 34 34 H 1.08995 * 109.46871 * 60.00368 * 17 16 14 35 35 H 0.96702 * 114.00058 * 179.97438 * 18 17 16 36 36 H 1.08992 * 109.46832 * 179.97438 * 19 14 13 37 37 H 1.08992 * 109.47269 * 300.00037 * 20 19 14 38 38 H 1.08997 * 109.46991 * 60.00862 * 20 19 14 39 39 H 1.08992 * 109.47478 * 300.00037 * 21 20 19 40 40 H 1.09006 * 109.47362 * 179.97438 * 21 20 19 41 41 H 1.08994 * 109.47475 * 179.97438 * 22 21 20 42 42 H 1.09002 * 109.47103 * 59.99567 * 22 21 20 43 43 H 1.09002 * 109.46987 * 299.99767 * 23 22 21 44 44 H 1.09002 * 109.47283 * 179.97438 * 23 22 21 45 45 H 1.09001 * 109.47135 * 299.99756 * 24 19 14 46 46 H 1.09002 * 109.47274 * 59.99663 * 24 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.1030 1.6962 -1.2124 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6962 1.2126 7 6 2.0044 -1.1942 0.0005 8 1 3.0844 -1.1942 0.0001 9 6 1.2508 -2.4992 0.0005 10 6 2.2450 -3.6622 0.0005 11 6 1.4914 -4.9673 0.0012 12 8 0.2786 -4.9671 0.0011 13 7 2.1652 -6.1345 0.0018 14 6 1.4326 -7.4031 0.0019 15 1 0.5221 -7.2971 -0.5879 16 6 1.0681 -7.7816 1.4388 17 6 0.0908 -6.7498 2.0056 18 8 -0.2492 -7.1029 3.3479 19 6 2.3100 -8.4988 -0.6071 20 6 3.5880 -8.6477 0.2209 21 6 4.4650 -9.7438 -0.3876 22 6 4.8296 -9.3660 -1.8248 23 6 3.5516 -9.2170 -2.6527 24 6 2.6745 -8.1205 -2.0440 25 1 -0.4850 0.8401 -0.0004 26 1 0.6245 -2.5571 -0.8897 27 1 0.6239 -2.5567 0.8904 28 1 2.8716 -3.6044 0.8905 29 1 2.8717 -3.6045 -0.8894 30 1 3.1352 -6.1345 0.0022 31 1 0.6021 -8.7668 1.4481 32 1 1.9707 -7.8008 2.0496 33 1 0.5568 -5.7645 1.9964 34 1 -0.8118 -6.7305 1.3949 35 1 -0.8667 -6.4908 3.7712 36 1 1.7650 -9.4427 -0.6066 37 1 4.1330 -7.7038 0.2209 38 1 3.3282 -8.9173 1.2446 39 1 3.9198 -10.6875 -0.3872 40 1 5.3757 -9.8496 0.2020 41 1 5.4547 -10.1466 -2.2582 42 1 5.3748 -8.4222 -1.8252 43 1 3.0063 -10.1609 -2.6523 44 1 3.8112 -8.9475 -3.6765 45 1 1.7640 -8.0143 -2.6339 46 1 3.2195 -7.1765 -2.0441 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360402906.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:29 Heat of formation + Delta-G solvation = -133.418000 kcal Electronic energy + Delta-G solvation = -23325.776667 eV Core-core repulsion = 20020.438451 eV Total energy + Delta-G solvation = -3305.338216 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.21492 -38.40735 -36.69610 -35.02978 -33.45002 -31.86434 -31.01193 -30.60794 -30.10273 -26.06507 -24.96298 -23.07373 -21.96146 -21.91654 -20.54064 -19.84672 -19.27889 -17.24296 -16.87320 -16.28061 -15.83085 -15.45602 -14.85561 -14.49067 -14.43995 -14.32356 -14.08412 -13.93243 -13.69860 -13.31638 -13.09672 -12.44437 -12.29007 -12.21557 -12.07649 -11.83302 -11.41811 -11.34444 -11.23391 -11.16249 -10.92605 -10.82646 -10.65990 -10.59475 -10.22259 -10.14505 -9.96063 -9.66733 -9.64327 -9.17839 -8.99859 -8.74418 -8.32353 -5.96849 -4.01119 3.24642 3.33899 3.38566 3.40010 3.58089 4.15870 4.46943 4.48000 4.51248 4.61692 4.97224 5.00546 5.05608 5.16855 5.26348 5.28384 5.32185 5.38175 5.38897 5.44843 5.53468 5.66658 5.71182 5.79223 5.81875 5.89575 5.92729 5.95655 5.96973 6.07680 6.12581 6.19228 6.22480 6.24659 6.28019 6.30928 6.80547 6.89399 7.73186 7.79516 7.85376 7.91140 8.06202 8.38416 8.78886 9.07294 9.62434 11.14036 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.016930 B = 0.003942 C = 0.003415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1653.446755 B = 7102.008728 C = 8196.868329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.059 3.941 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.528 4.528 8 H 0.055 0.945 9 C 0.039 3.961 10 C -0.132 4.132 11 C 0.510 3.490 12 O -0.534 6.534 13 N -0.736 5.736 14 C 0.151 3.849 15 H 0.087 0.913 16 C -0.127 4.127 17 C 0.077 3.923 18 O -0.586 6.586 19 C -0.090 4.090 20 C -0.119 4.119 21 C -0.118 4.118 22 C -0.121 4.121 23 C -0.119 4.119 24 C -0.115 4.115 25 H 0.261 0.739 26 H 0.023 0.977 27 H 0.022 0.978 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.396 0.604 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.055 0.945 34 H 0.050 0.950 35 H 0.379 0.621 36 H 0.081 0.919 37 H 0.063 0.937 38 H 0.068 0.932 39 H 0.060 0.940 40 H 0.060 0.940 41 H 0.058 0.942 42 H 0.062 0.938 43 H 0.060 0.940 44 H 0.060 0.940 45 H 0.063 0.937 46 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.767 -20.771 -1.073 22.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.566 4.566 8 H 0.073 0.927 9 C 0.002 3.998 10 C -0.172 4.172 11 C 0.298 3.702 12 O -0.409 6.409 13 N -0.391 5.391 14 C 0.045 3.955 15 H 0.106 0.894 16 C -0.166 4.166 17 C 0.000 4.000 18 O -0.392 6.392 19 C -0.109 4.109 20 C -0.156 4.156 21 C -0.156 4.156 22 C -0.158 4.158 23 C -0.156 4.156 24 C -0.152 4.152 25 H 0.071 0.929 26 H 0.041 0.959 27 H 0.041 0.959 28 H 0.096 0.904 29 H 0.096 0.904 30 H 0.231 0.769 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.074 0.926 34 H 0.068 0.932 35 H 0.226 0.774 36 H 0.100 0.900 37 H 0.081 0.919 38 H 0.087 0.913 39 H 0.079 0.921 40 H 0.079 0.921 41 H 0.077 0.923 42 H 0.081 0.919 43 H 0.078 0.922 44 H 0.079 0.921 45 H 0.082 0.918 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 7.118 -21.131 -1.216 22.331 hybrid contribution 0.551 1.415 0.085 1.520 sum 7.669 -19.717 -1.131 21.186 Atomic orbital electron populations 1.69981 1.06051 1.26684 1.50142 1.25015 0.94814 0.99187 0.95283 0.86662 0.79567 0.83209 0.78552 1.20258 1.21280 1.20249 1.21193 0.92883 0.91073 1.51487 0.92716 1.18869 0.93115 0.89349 0.98499 1.21876 1.00751 0.92172 1.02381 1.21502 0.88721 0.85724 0.74217 1.90658 1.14367 1.87644 1.48279 1.46350 1.09973 1.05307 1.77451 1.20847 0.95816 0.83599 0.95193 0.89447 1.21980 0.99569 0.99059 0.95986 1.22362 0.97955 0.97819 0.81886 1.86338 1.68552 1.55571 1.28768 1.21414 0.96111 0.98181 0.95167 1.21666 0.95646 0.99114 0.99207 1.21524 0.99452 0.98594 0.95989 1.21552 0.97399 1.01473 0.95411 1.21537 0.96232 0.98998 0.98842 1.21581 0.99909 0.98833 0.94908 0.92909 0.95867 0.95943 0.90415 0.90355 0.76920 0.91062 0.91080 0.92643 0.93187 0.77443 0.90044 0.91860 0.91335 0.92089 0.92107 0.92337 0.91919 0.92172 0.92087 0.91825 0.91424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.28 13.29 55.43 0.74 -26.55 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.89 21.61 29.54 -169.99 -5.02 16.59 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.53 -14.90 9.11 -34.44 -0.31 -15.21 16 8 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 9 C 0.04 1.04 4.26 -27.89 -0.12 0.92 16 10 C -0.13 -2.62 5.64 -27.88 -0.16 -2.78 16 11 C 0.51 9.26 6.40 -10.98 -0.07 9.19 16 12 O -0.53 -11.63 13.12 5.56 0.07 -11.56 16 13 N -0.74 -9.75 4.26 -53.80 -0.23 -9.98 16 14 C 0.15 1.80 2.00 -67.93 -0.14 1.66 16 15 H 0.09 1.22 7.58 -51.93 -0.39 0.83 16 16 C -0.13 -1.59 4.75 -26.73 -0.13 -1.72 16 17 C 0.08 1.19 5.65 37.16 0.21 1.40 16 18 O -0.59 -8.64 13.66 -35.23 -0.48 -9.12 16 19 C -0.09 -0.81 2.04 -90.62 -0.18 -1.00 16 20 C -0.12 -0.97 4.68 -26.73 -0.13 -1.09 16 21 C -0.12 -0.85 5.92 -26.73 -0.16 -1.01 16 22 C -0.12 -0.88 5.92 -26.73 -0.16 -1.04 16 23 C -0.12 -0.92 5.92 -26.71 -0.16 -1.08 16 24 C -0.11 -1.05 5.05 -26.71 -0.13 -1.19 16 25 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 26 H 0.02 0.67 8.10 -51.93 -0.42 0.25 16 27 H 0.02 0.65 8.10 -51.93 -0.42 0.23 16 28 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 29 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 30 H 0.40 4.34 6.65 -40.82 -0.27 4.07 16 31 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.07 0.87 6.71 -51.93 -0.35 0.52 16 33 H 0.06 0.99 5.64 -51.93 -0.29 0.70 16 34 H 0.05 0.82 7.85 -51.93 -0.41 0.41 16 35 H 0.38 4.25 9.12 45.56 0.42 4.66 16 36 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.06 0.52 6.50 -51.93 -0.34 0.18 16 38 H 0.07 0.57 6.54 -51.93 -0.34 0.23 16 39 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 43 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 44 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 45 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.07 0.67 7.45 -51.93 -0.39 0.29 16 LS Contribution 353.85 15.07 5.33 5.33 Total: -1.00 -33.10 353.85 -8.72 -41.81 By element: Atomic # 1 Polarization: 12.20 SS G_CDS: -7.40 Total: 4.81 kcal Atomic # 6 Polarization: -9.61 SS G_CDS: -1.73 Total: -11.34 kcal Atomic # 7 Polarization: -37.03 SS G_CDS: 0.51 Total: -36.52 kcal Atomic # 8 Polarization: -20.26 SS G_CDS: -0.41 Total: -20.67 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -33.10 -8.72 -41.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360402906.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.606 kcal (2) G-P(sol) polarization free energy of solvation -33.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds