Wall clock time and date at job start Tue Mar 31 2020 06:56:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.56629 * 2 1 4 4 C 1.53287 * 109.56513 * 120.23725 * 2 1 3 5 5 C 1.53024 * 109.19874 * 175.47436 * 4 2 1 6 6 N 1.46823 * 109.75011 * 299.05422 * 5 4 2 7 7 C 1.46897 * 110.99836 * 187.55231 * 6 5 4 8 8 C 1.53010 * 109.47193 * 66.04722 * 7 6 5 9 9 C 1.52997 * 109.46959 * 180.02562 * 8 7 6 10 10 S 1.80998 * 109.46942 * 180.02562 * 9 8 7 11 11 C 1.76202 * 99.99788 * 179.97438 * 10 9 8 12 12 H 1.07993 * 120.00596 * 359.97438 * 11 10 9 13 13 C 1.38809 * 119.99833 * 179.97438 * 11 10 9 14 14 N 1.31630 * 119.99773 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 119.99840 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.46992 * 60.00255 * 15 13 11 17 17 H 1.48494 * 109.46744 * 180.02562 * 15 13 11 18 18 H 1.48497 * 109.47006 * 300.00159 * 15 13 11 19 19 C 1.46990 * 111.17211 * 63.47102 * 6 5 4 20 20 C 1.52815 * 109.57094 * 239.75854 * 2 1 3 21 21 C 1.53362 * 113.56204 * 55.05325 * 20 2 1 22 22 C 1.53849 * 86.95805 * 220.15384 * 21 20 2 23 23 C 1.53375 * 113.52698 * 317.11491 * 20 2 1 24 24 H 1.08994 * 109.47434 * 306.15758 * 1 2 3 25 25 H 1.09007 * 109.46983 * 66.15990 * 1 2 3 26 26 H 1.08997 * 109.47201 * 186.15433 * 1 2 3 27 27 H 1.08997 * 109.51572 * 295.38618 * 4 2 1 28 28 H 1.08998 * 109.51855 * 55.55753 * 4 2 1 29 29 H 1.08998 * 109.42796 * 59.13941 * 5 4 2 30 30 H 1.09006 * 109.42640 * 179.02833 * 5 4 2 31 31 H 1.08998 * 109.47183 * 186.04187 * 7 6 5 32 32 H 1.09000 * 109.47301 * 306.04387 * 7 6 5 33 33 H 1.08998 * 109.46619 * 299.99810 * 8 7 6 34 34 H 1.08993 * 109.46699 * 59.99979 * 8 7 6 35 35 H 1.09006 * 109.47268 * 300.00051 * 9 8 7 36 36 H 1.09000 * 109.47419 * 59.99736 * 9 8 7 37 37 H 0.97000 * 119.99814 * 179.97438 * 14 13 11 38 38 H 1.09002 * 109.50008 * 60.52757 * 19 6 5 39 39 H 1.09006 * 109.50282 * 180.59451 * 19 6 5 40 40 H 1.09004 * 113.63209 * 334.67233 * 21 20 2 41 41 H 1.09004 * 113.63118 * 105.63337 * 21 20 2 42 42 H 1.09005 * 113.59894 * 270.56161 * 22 21 20 43 43 H 1.08992 * 113.67541 * 139.71038 * 22 21 20 44 44 H 1.09003 * 113.63008 * 254.39093 * 23 20 2 45 45 H 1.08994 * 113.63820 * 25.27569 * 23 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8951 1.0271 0.0000 4 6 2.0433 -0.7274 1.2479 5 6 3.5693 -0.8217 1.1833 6 7 3.9693 -1.5860 -0.0048 7 6 5.4148 -1.8473 -0.0006 8 6 5.7616 -2.7771 1.1641 9 6 7.2673 -3.0487 1.1689 10 16 7.6774 -4.1492 2.5461 11 6 9.4189 -4.2895 2.3174 12 1 9.9003 -3.7687 1.5031 13 6 10.1720 -5.0697 3.1840 14 7 9.5851 -5.7050 4.1762 15 14 12.0181 -5.2191 2.9411 16 1 12.6404 -3.8741 3.0365 17 1 12.5854 -6.1031 3.9907 18 1 12.2959 -5.7992 1.6026 19 6 3.5615 -0.9001 -1.2393 20 6 2.0419 -0.7252 -1.2439 21 6 1.4885 -0.1565 -2.5563 22 6 1.3667 -1.6118 -3.0402 23 6 1.2761 -2.0163 -1.5585 24 1 -0.3634 0.6063 0.8297 25 1 -0.3633 0.4154 -0.9400 26 1 -0.3633 -1.0217 0.1102 27 1 1.7503 -0.1725 2.1391 28 1 1.6178 -1.7301 1.2858 29 1 3.9926 0.1812 1.1285 30 1 3.9397 -1.3232 2.0775 31 1 5.7015 -2.3196 -0.9402 32 1 5.9538 -0.9066 0.1125 33 1 5.4750 -2.3048 2.1037 34 1 5.2227 -3.7176 1.0509 35 1 7.5544 -3.5207 0.2292 36 1 7.8059 -2.1079 1.2822 37 1 10.1113 -6.2505 4.7816 38 1 4.0402 0.0780 -1.2872 39 1 3.8619 -1.4947 -2.1022 40 1 0.5290 0.3483 -2.4436 41 1 2.2143 0.4316 -3.1181 42 1 2.2621 -1.9820 -3.5396 43 1 0.4551 -1.8109 -3.6034 44 1 1.8313 -2.9231 -1.3183 45 1 0.2584 -2.0269 -1.1684 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000371436680.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:32 Heat of formation + Delta-G solvation = -1.840497 kcal Electronic energy + Delta-G solvation = -20417.405391 eV Core-core repulsion = 17560.525675 eV Total energy + Delta-G solvation = -2856.879716 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.167 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.81472 -37.25692 -34.41859 -32.53333 -32.35419 -29.37516 -27.96704 -25.89894 -25.64293 -24.64960 -23.61602 -22.12416 -21.07502 -20.19870 -17.89965 -17.42058 -16.26824 -15.64217 -15.41046 -15.01081 -14.78260 -14.39343 -14.26237 -14.20504 -13.66360 -13.39518 -12.88058 -12.85691 -12.70319 -12.19598 -11.94222 -11.83530 -11.68263 -11.49753 -11.37407 -11.19107 -11.05311 -11.02248 -10.83179 -10.76298 -10.63007 -10.29773 -10.24226 -10.00499 -9.82905 -9.47183 -9.02701 -8.27366 -8.23509 -6.49465 -6.20137 -3.90043 3.23180 3.24728 3.29251 3.55665 3.89745 4.25363 4.38841 4.45351 4.49378 4.71602 4.84120 4.90661 5.05196 5.14493 5.15872 5.28340 5.33832 5.36951 5.41521 5.46273 5.51805 5.53998 5.55523 5.65513 5.66982 5.74130 5.75464 5.80058 5.83750 5.92864 5.95638 5.99877 6.02765 6.10732 6.12895 6.23380 6.36123 6.37607 6.41306 6.64673 6.80431 7.16740 7.18251 7.62678 8.38969 9.25902 10.88026 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.038829 B = 0.002816 C = 0.002730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.938972 B = 9939.587902 C =10252.786497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.078 4.078 3 H 0.064 0.936 4 C -0.109 4.109 5 C 0.051 3.949 6 N -0.533 5.533 7 C 0.061 3.939 8 C -0.093 4.093 9 C -0.112 4.112 10 S -0.132 6.132 11 C -0.517 4.517 12 H 0.071 0.929 13 C 0.071 3.929 14 N -0.870 5.870 15 Si 0.918 3.082 16 H -0.274 1.274 17 H -0.283 1.283 18 H -0.274 1.274 19 C 0.081 3.919 20 C -0.070 4.070 21 C -0.136 4.136 22 C -0.143 4.143 23 C -0.128 4.128 24 H 0.051 0.949 25 H 0.056 0.944 26 H 0.060 0.940 27 H 0.063 0.937 28 H 0.072 0.928 29 H 0.028 0.972 30 H 0.082 0.918 31 H 0.072 0.928 32 H 0.030 0.970 33 H 0.064 0.936 34 H 0.073 0.927 35 H 0.059 0.941 36 H 0.057 0.943 37 H 0.267 0.733 38 H 0.030 0.970 39 H 0.075 0.925 40 H 0.084 0.916 41 H 0.062 0.938 42 H 0.077 0.923 43 H 0.062 0.938 44 H 0.075 0.925 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.155 12.000 -11.481 24.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.096 4.096 3 H 0.082 0.918 4 C -0.147 4.147 5 C -0.077 4.077 6 N -0.257 5.257 7 C -0.068 4.068 8 C -0.131 4.131 9 C -0.262 4.262 10 S 0.096 5.904 11 C -0.665 4.665 12 H 0.089 0.911 13 C -0.138 4.138 14 N -0.506 5.506 15 Si 0.744 3.256 16 H -0.200 1.200 17 H -0.208 1.208 18 H -0.199 1.199 19 C -0.047 4.047 20 C -0.070 4.070 21 C -0.174 4.174 22 C -0.180 4.180 23 C -0.165 4.165 24 H 0.070 0.930 25 H 0.075 0.925 26 H 0.078 0.922 27 H 0.082 0.918 28 H 0.091 0.909 29 H 0.047 0.953 30 H 0.101 0.899 31 H 0.090 0.910 32 H 0.049 0.951 33 H 0.083 0.917 34 H 0.092 0.908 35 H 0.078 0.922 36 H 0.076 0.924 37 H 0.077 0.923 38 H 0.049 0.951 39 H 0.093 0.907 40 H 0.102 0.898 41 H 0.081 0.919 42 H 0.096 0.904 43 H 0.081 0.919 44 H 0.094 0.906 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -19.022 10.948 -10.506 24.332 hybrid contribution 2.507 1.272 -1.090 3.015 sum -16.515 12.219 -11.596 23.591 Atomic orbital electron populations 1.21966 0.95333 1.01929 1.01379 1.21012 0.95341 0.98710 0.94582 0.91777 1.21638 0.94988 1.01193 0.96859 1.22141 0.95667 0.95790 0.94091 1.61885 1.15292 1.46886 1.01638 1.22161 0.86230 0.98352 1.00064 1.21278 0.94732 0.99820 0.97302 1.23236 0.97299 1.02504 1.03133 1.84622 1.10193 1.60049 1.35526 1.22658 0.91456 1.34994 1.17378 0.91067 1.25014 0.99425 0.94784 0.94568 1.70015 1.36190 1.29134 1.15228 0.86231 0.83058 0.78234 0.78056 1.19973 1.20816 1.19944 1.21833 0.93272 0.96648 0.92987 1.21579 0.94418 0.96965 0.94042 1.23017 1.01183 0.96691 0.96502 1.22844 1.01650 0.96453 0.97056 1.22941 1.00410 0.97931 0.95191 0.92957 0.92537 0.92151 0.91806 0.90894 0.95331 0.89937 0.90969 0.95143 0.91692 0.90788 0.92191 0.92437 0.92277 0.95138 0.90693 0.89756 0.91892 0.90416 0.91925 0.90649 0.89986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 8.28 37.16 0.31 -0.81 16 2 C -0.08 -0.70 2.46 -90.57 -0.22 -0.92 16 3 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 4 C -0.11 -1.09 5.32 -26.57 -0.14 -1.24 16 5 C 0.05 0.60 5.26 -3.85 -0.02 0.58 16 6 N -0.53 -6.68 4.66 -234.61 -1.09 -7.78 16 7 C 0.06 0.85 4.96 -3.82 -0.02 0.83 16 8 C -0.09 -1.56 5.16 -26.73 -0.14 -1.70 16 9 C -0.11 -2.32 5.67 37.16 0.21 -2.11 16 10 S -0.13 -3.52 21.44 -107.50 -2.30 -5.82 16 11 C -0.52 -15.03 9.50 30.94 0.29 -14.74 16 12 H 0.07 2.00 7.80 -52.49 -0.41 1.59 16 13 C 0.07 2.04 5.49 -17.43 -0.10 1.95 16 14 N -0.87 -26.29 13.22 55.49 0.73 -25.56 16 15 Si 0.92 21.76 29.55 -169.99 -5.02 16.73 16 16 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 17 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 18 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 19 C 0.08 0.87 4.54 -3.79 -0.02 0.86 16 20 C -0.07 -0.64 0.77 -154.24 -0.12 -0.76 16 21 C -0.14 -1.09 7.05 -26.10 -0.18 -1.27 16 22 C -0.14 -1.16 7.74 -25.84 -0.20 -1.36 16 23 C -0.13 -1.17 6.84 -26.09 -0.18 -1.35 16 24 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.06 0.39 6.01 -51.92 -0.31 0.08 16 26 H 0.06 0.46 6.40 -51.93 -0.33 0.13 16 27 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.07 0.79 8.09 -51.93 -0.42 0.37 16 29 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.08 1.06 6.15 -51.93 -0.32 0.74 16 31 H 0.07 0.98 8.02 -51.93 -0.42 0.57 16 32 H 0.03 0.42 8.12 -51.93 -0.42 0.00 16 33 H 0.06 1.10 6.40 -51.93 -0.33 0.77 16 34 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 35 H 0.06 1.22 8.14 -51.91 -0.42 0.80 16 36 H 0.06 1.18 8.14 -51.92 -0.42 0.75 16 37 H 0.27 7.53 8.31 -40.82 -0.34 7.20 16 38 H 0.03 0.34 8.14 -51.93 -0.42 -0.09 16 39 H 0.07 0.81 7.27 -51.93 -0.38 0.43 16 40 H 0.08 0.61 6.01 -51.93 -0.31 0.30 16 41 H 0.06 0.50 8.10 -51.93 -0.42 0.08 16 42 H 0.08 0.65 7.64 -51.93 -0.40 0.25 16 43 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.07 0.82 8.09 -51.93 -0.42 0.40 16 45 H 0.08 0.70 5.71 -51.93 -0.30 0.40 16 LS Contribution 350.65 15.07 5.28 5.28 Total: -1.00 -30.31 350.65 -11.06 -41.37 By element: Atomic # 1 Polarization: 5.95 SS G_CDS: -8.13 Total: -2.18 kcal Atomic # 6 Polarization: -21.52 SS G_CDS: -0.52 Total: -22.04 kcal Atomic # 7 Polarization: -32.98 SS G_CDS: -0.36 Total: -33.34 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.73 kcal Atomic # 16 Polarization: -3.52 SS G_CDS: -2.30 Total: -5.82 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -30.31 -11.06 -41.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000371436680.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.525 kcal (2) G-P(sol) polarization free energy of solvation -30.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds