Wall clock time and date at job start Tue Mar 31 2020 07:08:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86794 * 120.00396 * 2 1 4 4 H 1.48499 * 109.47245 * 240.00262 * 3 2 1 5 5 H 1.48506 * 109.47018 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.47214 * 120.00069 * 3 2 1 7 7 C 1.37883 * 119.99597 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99703 * 179.97438 * 7 2 1 9 9 C 1.50692 * 120.00016 * 359.97438 * 7 2 1 10 10 C 1.53007 * 109.47249 * 180.02562 * 9 7 2 11 11 C 1.50692 * 109.47249 * 179.97438 * 10 9 7 12 12 O 1.21284 * 120.00023 * 0.02562 * 11 10 9 13 13 N 1.34779 * 120.00237 * 179.97438 * 11 10 9 14 14 C 1.46496 * 120.00320 * 180.02562 * 13 11 10 15 15 H 1.09002 * 109.47260 * 34.99887 * 14 13 11 16 16 C 1.52999 * 109.47135 * 275.00030 * 14 13 11 17 17 O 1.42903 * 109.47256 * 295.00379 * 16 14 13 18 18 C 1.53002 * 109.47141 * 155.00131 * 14 13 11 19 19 C 1.53000 * 109.47104 * 294.99784 * 18 14 13 20 20 C 1.52998 * 109.47047 * 295.00149 * 19 18 14 21 21 C 1.53000 * 109.47047 * 179.97438 * 20 19 18 22 22 C 1.53000 * 109.47081 * 59.99858 * 21 20 19 23 23 C 1.52998 * 109.47296 * 299.99990 * 22 21 20 24 24 C 1.53000 * 109.47047 * 59.99989 * 23 22 21 25 25 H 0.97003 * 119.99865 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.47661 * 59.99959 * 9 7 2 27 27 H 1.09009 * 109.47473 * 300.00117 * 9 7 2 28 28 H 1.08994 * 109.46914 * 59.99534 * 10 9 7 29 29 H 1.09005 * 109.46323 * 299.99825 * 10 9 7 30 30 H 0.97000 * 119.99742 * 0.02562 * 13 11 10 31 31 H 1.08997 * 109.47286 * 174.99939 * 16 14 13 32 32 H 1.09008 * 109.47201 * 54.99719 * 16 14 13 33 33 H 0.96700 * 114.00311 * 180.02562 * 17 16 14 34 34 H 1.09005 * 109.47196 * 55.00093 * 18 14 13 35 35 H 1.09000 * 109.46998 * 175.00060 * 18 14 13 36 36 H 1.09003 * 109.47002 * 54.99987 * 19 18 14 37 37 H 1.09003 * 109.47087 * 299.99786 * 20 19 18 38 38 H 1.09000 * 109.47093 * 60.00222 * 20 19 18 39 39 H 1.09003 * 109.47002 * 299.99838 * 21 20 19 40 40 H 1.09002 * 109.47386 * 180.02562 * 21 20 19 41 41 H 1.09002 * 109.46690 * 180.02562 * 22 21 20 42 42 H 1.08995 * 109.46975 * 60.00026 * 22 21 20 43 43 H 1.09003 * 109.47087 * 300.00203 * 23 22 21 44 44 H 1.08993 * 109.47338 * 180.02562 * 23 22 21 45 45 H 1.09001 * 109.46887 * 180.02562 * 24 23 22 46 46 H 1.08995 * 109.47195 * 59.99981 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 6 2.2451 -3.6622 -0.0005 11 6 1.4915 -4.9672 0.0001 12 8 0.2787 -4.9671 0.0000 13 7 2.1653 -6.1345 -0.0003 14 6 1.4327 -7.4031 -0.0003 15 1 0.5218 -7.2968 -0.5894 16 6 1.0693 -7.7821 1.4368 17 8 2.2638 -8.0352 2.1793 18 6 2.3097 -8.4984 -0.6103 19 6 2.5700 -8.1815 -2.0843 20 6 1.2519 -8.2398 -2.8590 21 6 1.5121 -7.9222 -4.3329 22 6 2.4892 -8.9479 -4.9108 23 6 3.8073 -8.8896 -4.1362 24 6 3.5471 -9.2072 -2.6623 25 1 -0.4850 0.8401 0.0004 26 1 0.6238 -2.5567 -0.8903 27 1 0.6245 -2.5571 0.8897 28 1 2.8717 -3.6044 0.8894 29 1 2.8717 -3.6044 -0.8906 30 1 3.1353 -6.1345 -0.0006 31 1 0.4488 -8.6782 1.4304 32 1 0.5199 -6.9629 1.9008 33 1 2.1090 -8.2820 3.1014 34 1 3.2584 -8.5444 -0.0755 35 1 1.8003 -9.4587 -0.5297 36 1 2.9985 -7.1829 -2.1711 37 1 0.8234 -9.2384 -2.7723 38 1 0.5560 -7.5088 -2.4475 39 1 1.9404 -6.9236 -4.4192 40 1 0.5730 -7.9634 -4.8847 41 1 2.6749 -8.7213 -5.9607 42 1 2.0610 -9.9465 -4.8244 43 1 4.2356 -7.8909 -4.2225 44 1 4.5036 -9.6199 -4.5482 45 1 4.4861 -9.1651 -2.1103 46 1 3.1189 -10.2057 -2.5759 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000416328668.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:20 Heat of formation + Delta-G solvation = -137.441935 kcal Electronic energy + Delta-G solvation = -23062.420556 eV Core-core repulsion = 19756.907849 eV Total energy + Delta-G solvation = -3305.512707 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.78663 -38.54103 -37.01405 -34.77044 -33.40163 -32.27200 -30.99010 -30.81360 -29.19863 -25.85601 -25.59493 -22.92691 -22.27929 -21.47306 -20.27325 -19.82204 -19.51963 -17.52153 -16.76626 -15.92123 -15.64463 -15.58214 -14.93860 -14.55502 -14.43748 -14.34241 -14.14201 -13.98571 -13.72107 -13.05846 -12.71969 -12.43116 -12.36367 -12.21796 -12.09695 -12.02875 -11.33251 -11.23813 -11.15906 -11.11730 -11.00037 -10.88432 -10.59337 -10.53545 -10.17276 -10.09931 -9.91656 -9.89200 -9.61719 -9.13220 -8.94140 -8.66442 -8.28653 -5.93216 -3.97341 3.32314 3.36421 3.40749 3.42515 3.63661 4.28255 4.43950 4.50282 4.57167 4.63559 4.87715 5.02529 5.08115 5.21249 5.31211 5.36228 5.40668 5.41604 5.42323 5.46803 5.47857 5.57125 5.62711 5.74629 5.82879 5.88629 5.90192 6.01856 6.05138 6.11871 6.15840 6.18201 6.29292 6.30966 6.35103 6.41572 6.86975 6.95746 7.55357 7.77511 7.90566 8.01587 8.10797 8.42747 8.86816 9.11410 9.65907 11.17736 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.016196 B = 0.003766 C = 0.003318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1728.412748 B = 7432.936169 C = 8437.882358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.527 4.527 8 H 0.055 0.945 9 C 0.038 3.962 10 C -0.130 4.130 11 C 0.511 3.489 12 O -0.540 6.540 13 N -0.729 5.729 14 C 0.146 3.854 15 H 0.099 0.901 16 C 0.062 3.938 17 O -0.569 6.569 18 C -0.114 4.114 19 C -0.089 4.089 20 C -0.117 4.117 21 C -0.121 4.121 22 C -0.118 4.118 23 C -0.120 4.120 24 C -0.112 4.112 25 H 0.261 0.739 26 H 0.023 0.977 27 H 0.022 0.978 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.398 0.602 31 H 0.048 0.952 32 H 0.053 0.947 33 H 0.375 0.625 34 H 0.075 0.925 35 H 0.070 0.930 36 H 0.075 0.925 37 H 0.059 0.941 38 H 0.066 0.934 39 H 0.063 0.937 40 H 0.059 0.941 41 H 0.058 0.942 42 H 0.058 0.942 43 H 0.062 0.938 44 H 0.058 0.942 45 H 0.060 0.940 46 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.549 -22.342 -3.710 23.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.565 4.565 8 H 0.073 0.927 9 C 0.001 3.999 10 C -0.170 4.170 11 C 0.299 3.701 12 O -0.416 6.416 13 N -0.382 5.382 14 C 0.041 3.959 15 H 0.117 0.883 16 C -0.017 4.017 17 O -0.373 6.373 18 C -0.152 4.152 19 C -0.107 4.107 20 C -0.154 4.154 21 C -0.158 4.158 22 C -0.156 4.156 23 C -0.158 4.158 24 C -0.149 4.149 25 H 0.071 0.929 26 H 0.041 0.959 27 H 0.041 0.959 28 H 0.096 0.904 29 H 0.096 0.904 30 H 0.232 0.768 31 H 0.066 0.934 32 H 0.071 0.929 33 H 0.221 0.779 34 H 0.094 0.906 35 H 0.089 0.911 36 H 0.093 0.907 37 H 0.077 0.923 38 H 0.085 0.915 39 H 0.082 0.918 40 H 0.078 0.922 41 H 0.076 0.924 42 H 0.077 0.923 43 H 0.081 0.919 44 H 0.076 0.924 45 H 0.079 0.921 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 5.762 -22.062 -4.298 23.203 hybrid contribution 0.575 0.772 0.602 1.135 sum 6.336 -21.290 -3.696 22.518 Atomic orbital electron populations 1.69990 1.06049 1.26632 1.50239 1.25018 0.94815 0.99175 0.95334 0.86660 0.79552 0.83214 0.78543 1.20256 1.21300 1.20266 1.21203 0.92898 0.91083 1.51350 0.92694 1.18877 0.93153 0.89375 0.98503 1.21852 1.00692 0.92120 1.02381 1.21535 0.88626 0.85768 0.74156 1.90651 1.14465 1.87722 1.48802 1.46157 1.10024 1.04933 1.77091 1.21022 0.96956 0.84228 0.93683 0.88338 1.22698 0.86742 0.99067 0.93219 1.86453 1.32099 1.92087 1.26699 1.21792 1.00793 0.97628 0.95009 1.21195 0.95871 0.99816 0.93853 1.21640 0.97217 1.01560 0.95022 1.21528 0.99069 0.99299 0.95923 1.21529 0.95763 0.99350 0.98938 1.21533 0.97153 1.01670 0.95410 1.21564 0.98986 0.98854 0.95544 0.92940 0.95883 0.95942 0.90364 0.90389 0.76806 0.93433 0.92885 0.77905 0.90599 0.91106 0.90696 0.92264 0.91517 0.91832 0.92184 0.92363 0.92299 0.91936 0.92365 0.92109 0.92233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.70 13.29 55.43 0.74 -26.97 16 2 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 3 Si 0.89 21.89 29.54 -169.99 -5.02 16.87 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.53 -15.17 9.11 -34.44 -0.31 -15.49 16 8 H 0.05 1.49 7.74 -52.49 -0.41 1.09 16 9 C 0.04 1.05 4.26 -27.88 -0.12 0.93 16 10 C -0.13 -2.72 5.64 -27.88 -0.16 -2.87 16 11 C 0.51 9.92 7.79 -10.99 -0.09 9.83 16 12 O -0.54 -12.65 15.64 5.55 0.09 -12.56 16 13 N -0.73 -10.56 4.39 -53.81 -0.24 -10.79 16 14 C 0.15 1.85 2.23 -67.93 -0.15 1.70 16 15 H 0.10 1.40 5.78 -51.93 -0.30 1.10 16 16 C 0.06 0.74 6.85 37.16 0.25 0.99 16 17 O -0.57 -6.25 12.83 -35.23 -0.45 -6.70 16 18 C -0.11 -1.13 3.94 -26.73 -0.11 -1.24 16 19 C -0.09 -0.88 2.13 -90.62 -0.19 -1.07 16 20 C -0.12 -1.21 4.96 -26.73 -0.13 -1.35 16 21 C -0.12 -1.21 5.92 -26.73 -0.16 -1.37 16 22 C -0.12 -1.02 5.92 -26.73 -0.16 -1.18 16 23 C -0.12 -1.01 5.92 -26.73 -0.16 -1.17 16 24 C -0.11 -0.95 5.21 -26.73 -0.14 -1.09 16 25 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 26 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 27 H 0.02 0.67 8.10 -51.92 -0.42 0.25 16 28 H 0.08 1.52 8.14 -51.93 -0.42 1.09 16 29 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 30 H 0.40 4.98 8.60 -40.82 -0.35 4.63 16 31 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.05 0.77 8.14 -51.92 -0.42 0.34 16 33 H 0.37 2.63 9.12 45.56 0.42 3.04 16 34 H 0.08 0.77 7.73 -51.93 -0.40 0.37 16 35 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.07 0.85 7.62 -51.93 -0.40 0.45 16 37 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.07 0.82 6.46 -51.93 -0.34 0.49 16 39 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 45 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 46 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 363.92 15.07 5.48 5.48 Total: -1.00 -33.97 363.92 -8.79 -42.76 By element: Atomic # 1 Polarization: 11.34 SS G_CDS: -7.67 Total: 3.67 kcal Atomic # 6 Polarization: -10.04 SS G_CDS: -1.72 Total: -11.76 kcal Atomic # 7 Polarization: -38.26 SS G_CDS: 0.50 Total: -37.76 kcal Atomic # 8 Polarization: -18.90 SS G_CDS: -0.36 Total: -19.27 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -33.97 -8.79 -42.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416328668.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.682 kcal (2) G-P(sol) polarization free energy of solvation -33.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds