Wall clock time and date at job start Tue Mar 31 2020 05:59:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99722 * 2 1 4 4 H 1.48506 * 109.47297 * 239.99731 * 3 2 1 5 5 H 1.48503 * 109.47261 * 119.99912 * 3 2 1 6 6 H 1.48500 * 109.47454 * 359.97438 * 3 2 1 7 7 C 1.37880 * 120.00327 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99932 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99572 * 0.02562 * 7 2 1 10 10 H 1.09000 * 110.67673 * 59.29573 * 9 7 2 11 11 C 1.54888 * 110.76043 * 296.06398 * 9 7 2 12 12 C 1.54460 * 104.10478 * 203.89829 * 11 9 7 13 13 C 1.53872 * 106.68828 * 23.34058 * 12 11 9 14 14 H 1.08998 * 110.03432 * 240.87569 * 13 12 11 15 15 N 1.46496 * 110.03744 * 119.44411 * 13 12 11 16 16 C 1.34774 * 120.00221 * 87.83178 * 15 13 12 17 17 O 1.21280 * 119.99934 * 0.02562 * 16 15 13 18 18 C 1.50695 * 120.00170 * 180.02562 * 16 15 13 19 19 H 1.09005 * 109.47122 * 300.00394 * 18 16 15 20 20 C 1.52999 * 109.47511 * 60.00279 * 18 16 15 21 21 C 1.53000 * 109.47438 * 180.02562 * 20 18 16 22 22 C 1.53001 * 109.47099 * 299.99897 * 21 20 18 23 23 C 1.52999 * 109.46891 * 59.99768 * 22 21 20 24 24 H 1.09000 * 109.47102 * 180.02562 * 23 22 21 25 25 F 1.39903 * 109.47035 * 60.00388 * 23 22 21 26 26 C 1.53000 * 109.47438 * 300.00024 * 23 22 21 27 27 C 1.54264 * 106.59452 * 0.15861 * 13 12 11 28 28 H 0.97006 * 119.99995 * 179.97438 * 1 2 3 29 29 H 1.09005 * 110.48586 * 322.42821 * 11 9 7 30 30 H 1.09000 * 110.48926 * 85.06070 * 11 9 7 31 31 H 1.09000 * 109.86000 * 264.10136 * 12 11 9 32 32 H 1.09004 * 110.16588 * 142.74591 * 12 11 9 33 33 H 0.97003 * 119.99750 * 267.84024 * 15 13 12 34 34 H 1.09003 * 109.46641 * 299.99933 * 20 18 16 35 35 H 1.08992 * 109.47201 * 59.99400 * 20 18 16 36 36 H 1.08998 * 109.47459 * 179.97438 * 21 20 18 37 37 H 1.08999 * 109.46960 * 59.99754 * 21 20 18 38 38 H 1.08992 * 109.46560 * 300.00156 * 22 21 20 39 39 H 1.08995 * 109.46899 * 180.02562 * 22 21 20 40 40 H 1.08999 * 109.46960 * 300.00246 * 26 23 22 41 41 H 1.08999 * 109.47116 * 179.97438 * 26 23 22 42 42 H 1.08998 * 110.48858 * 217.71161 * 27 13 12 43 43 H 1.08999 * 110.60237 * 95.12740 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 3.1028 1.6965 1.2125 6 1 1.2840 2.7465 -0.0006 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6080 -2.5722 -0.8765 11 6 0.4250 -2.6561 1.3013 12 6 0.2408 -4.1826 1.4483 13 6 1.3856 -4.8436 0.6610 14 1 0.9798 -5.4632 -0.1387 15 7 2.2078 -5.6579 1.5593 16 6 1.8800 -6.9442 1.7924 17 8 0.9045 -7.4278 1.2581 18 6 2.7254 -7.7817 2.7170 19 1 3.7431 -7.8352 2.3301 20 6 2.7417 -7.1465 4.1088 21 6 3.6006 -7.9965 5.0473 22 6 3.0149 -9.4070 5.1373 23 6 2.9985 -10.0422 3.7455 24 1 2.5808 -11.0470 3.8096 25 9 4.3046 -10.1105 3.2488 26 6 2.1397 -9.1923 2.8070 27 6 2.2296 -3.6980 0.0653 28 1 -0.4850 -0.8401 -0.0004 29 1 0.9749 -2.2559 2.1531 30 1 -0.5405 -2.1599 1.2023 31 1 -0.7207 -4.4814 1.0307 32 1 0.2964 -4.4684 2.4987 33 1 2.9882 -5.2712 1.9865 34 1 3.1595 -6.1418 4.0447 35 1 1.7242 -7.0929 4.4956 36 1 3.6126 -7.5437 6.0387 37 1 4.6182 -8.0496 4.6602 38 1 1.9974 -9.3538 5.5244 39 1 3.6265 -10.0124 5.8063 40 1 1.1221 -9.1391 3.1941 41 1 2.1284 -9.6446 1.8154 42 1 2.5780 -3.9603 -0.9337 43 1 3.0743 -3.4663 0.7141 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424866683.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:37 Heat of formation + Delta-G solvation = -131.192533 kcal Electronic energy + Delta-G solvation = -22850.363330 eV Core-core repulsion = 19421.661312 eV Total energy + Delta-G solvation = -3428.702017 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.169 amu Computer time = 1.65 seconds Orbital eigenvalues (eV) -47.88458 -40.10177 -37.84186 -36.81018 -33.93760 -32.16983 -31.22624 -30.59480 -28.21341 -26.92650 -24.11951 -23.51563 -22.95270 -20.73642 -20.02711 -19.70933 -19.17543 -17.45038 -16.95867 -16.39534 -15.72394 -15.55083 -15.30731 -15.03150 -14.87870 -14.30399 -13.77103 -13.73477 -13.30949 -12.93291 -12.89604 -12.59810 -12.49607 -12.26769 -12.04307 -11.82637 -11.40420 -11.21762 -11.07946 -10.95990 -10.74192 -10.66760 -10.65910 -10.38362 -10.14736 -10.06822 -9.77827 -9.56553 -9.40464 -8.72359 -8.47351 -8.34056 -6.32642 -4.05908 2.76948 3.35517 3.42965 3.44131 3.63036 4.17016 4.25198 4.37642 4.50673 4.52875 4.72011 4.77281 4.95967 5.02198 5.06419 5.19962 5.28512 5.34088 5.44170 5.54081 5.60401 5.61127 5.66047 5.72188 5.80185 5.83892 5.95574 6.08225 6.16967 6.20852 6.40594 6.50346 6.56890 6.70842 6.76014 6.99369 7.10835 7.31371 7.63553 7.74170 8.23081 8.40618 8.43532 8.88785 9.66243 11.04805 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.033158 B = 0.003286 C = 0.003184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.246968 B = 8519.377913 C = 8791.790424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.020 3.980 3 Si 1.066 2.934 4 H -0.289 1.289 5 H -0.289 1.289 6 H -0.283 1.283 7 C -0.595 4.595 8 H 0.048 0.952 9 C 0.035 3.965 10 H 0.024 0.976 11 C -0.115 4.115 12 C -0.131 4.131 13 C 0.137 3.863 14 H 0.081 0.919 15 N -0.716 5.716 16 C 0.514 3.486 17 O -0.547 6.547 18 C -0.108 4.108 19 H 0.100 0.900 20 C -0.113 4.113 21 C -0.119 4.119 22 C -0.147 4.147 23 C 0.091 3.909 24 H 0.085 0.915 25 F -0.214 7.214 26 C -0.124 4.124 27 C -0.113 4.113 28 H 0.273 0.727 29 H 0.054 0.946 30 H 0.057 0.943 31 H 0.056 0.944 32 H 0.052 0.948 33 H 0.398 0.602 34 H 0.073 0.927 35 H 0.070 0.930 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.081 0.919 39 H 0.074 0.926 40 H 0.088 0.912 41 H 0.081 0.919 42 H 0.054 0.946 43 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.550 -17.766 10.384 21.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.185 4.185 3 Si 0.895 3.105 4 H -0.215 1.215 5 H -0.215 1.215 6 H -0.208 1.208 7 C -0.633 4.633 8 H 0.067 0.933 9 C 0.017 3.983 10 H 0.042 0.958 11 C -0.154 4.154 12 C -0.170 4.170 13 C 0.033 3.967 14 H 0.099 0.901 15 N -0.367 5.367 16 C 0.300 3.700 17 O -0.425 6.425 18 C -0.129 4.129 19 H 0.118 0.882 20 C -0.151 4.151 21 C -0.156 4.156 22 C -0.185 4.185 23 C 0.055 3.945 24 H 0.103 0.897 25 F -0.195 7.195 26 C -0.162 4.162 27 C -0.151 4.151 28 H 0.085 0.915 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.071 0.929 33 H 0.232 0.768 34 H 0.091 0.909 35 H 0.089 0.911 36 H 0.090 0.910 37 H 0.089 0.911 38 H 0.100 0.900 39 H 0.092 0.908 40 H 0.106 0.894 41 H 0.099 0.901 42 H 0.073 0.927 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 5.667 -16.455 9.969 20.056 hybrid contribution 0.644 -1.500 0.193 1.644 sum 6.311 -17.955 10.162 21.575 Atomic orbital electron populations 1.70799 1.06867 1.31103 1.46178 1.25767 0.96562 1.02489 0.93647 0.83584 0.74922 0.75577 0.76447 1.21523 1.21539 1.20842 1.21915 0.93948 0.91393 1.56058 0.93329 1.19705 0.92838 0.92790 0.93009 0.95766 1.22609 1.00657 0.91474 1.00627 1.22621 0.97448 0.98053 0.98900 1.21840 0.91684 0.91707 0.91449 0.90126 1.46332 1.30836 1.11278 1.48211 1.20518 0.85339 0.82337 0.81803 1.90675 1.28301 1.72258 1.51246 1.21299 1.00733 0.95064 0.95844 0.88155 1.21562 1.01260 0.99165 0.93069 1.21499 0.99795 0.94397 0.99949 1.22155 1.02982 0.97382 0.95965 1.21609 0.78698 1.00341 0.93836 0.89746 1.92796 1.39672 1.97742 1.89243 1.21926 0.99791 0.93707 1.00826 1.22625 0.98696 0.94675 0.99128 0.91502 0.92698 0.92416 0.92529 0.92903 0.76780 0.90858 0.91119 0.91024 0.91073 0.90003 0.90768 0.89364 0.90054 0.92748 0.91901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.99 13.45 55.43 0.75 -26.24 16 2 C 0.02 0.55 5.35 -17.82 -0.10 0.46 16 3 Si 1.07 24.69 29.90 -169.99 -5.08 19.61 16 4 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 7 C -0.59 -16.17 8.52 -34.44 -0.29 -16.47 16 8 H 0.05 1.31 7.78 -52.49 -0.41 0.90 16 9 C 0.04 0.86 2.40 -89.78 -0.22 0.64 16 10 H 0.02 0.63 8.00 -51.93 -0.42 0.22 16 11 C -0.12 -2.58 5.62 -24.97 -0.14 -2.73 16 12 C -0.13 -2.50 6.60 -25.51 -0.17 -2.67 16 13 C 0.14 2.46 3.25 -66.82 -0.22 2.24 16 14 H 0.08 1.54 7.57 -51.93 -0.39 1.15 16 15 N -0.72 -10.56 4.87 -52.73 -0.26 -10.82 16 16 C 0.51 7.56 7.15 -10.99 -0.08 7.48 16 17 O -0.55 -10.05 15.64 5.56 0.09 -9.97 16 18 C -0.11 -1.17 2.40 -91.77 -0.22 -1.39 16 19 H 0.10 1.05 7.80 -51.93 -0.41 0.64 16 20 C -0.11 -1.02 5.10 -26.73 -0.14 -1.16 16 21 C -0.12 -0.90 5.80 -26.73 -0.16 -1.06 16 22 C -0.15 -1.02 5.72 -26.73 -0.15 -1.18 16 23 C 0.09 0.76 4.12 -26.73 -0.11 0.65 16 24 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 25 F -0.21 -2.26 16.04 2.25 0.04 -2.23 16 26 C -0.12 -1.26 4.29 -26.73 -0.11 -1.38 16 27 C -0.11 -2.24 5.94 -25.07 -0.15 -2.39 16 28 H 0.27 7.96 5.40 -40.82 -0.22 7.74 16 29 H 0.05 1.27 8.04 -51.93 -0.42 0.85 16 30 H 0.06 1.38 6.47 -51.93 -0.34 1.05 16 31 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 32 H 0.05 0.95 7.92 -51.93 -0.41 0.53 16 33 H 0.40 4.98 7.78 -40.82 -0.32 4.67 16 34 H 0.07 0.64 7.57 -51.93 -0.39 0.25 16 35 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.07 0.57 7.80 -51.93 -0.41 0.17 16 38 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.09 0.90 8.10 -51.93 -0.42 0.48 16 41 H 0.08 0.91 8.10 -51.93 -0.42 0.49 16 42 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 43 H 0.06 1.20 7.64 -51.93 -0.40 0.80 16 LS Contribution 336.44 15.07 5.07 5.07 Total: -1.00 -31.19 336.44 -8.76 -39.96 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: -7.12 Total: 3.55 kcal Atomic # 6 Polarization: -16.69 SS G_CDS: -2.25 Total: -18.94 kcal Atomic # 7 Polarization: -37.55 SS G_CDS: 0.49 Total: -37.06 kcal Atomic # 8 Polarization: -10.05 SS G_CDS: 0.09 Total: -9.97 kcal Atomic # 9 Polarization: -2.26 SS G_CDS: 0.04 Total: -2.23 kcal Atomic # 14 Polarization: 24.69 SS G_CDS: -5.08 Total: 19.61 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -31.19 -8.76 -39.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424866683.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.237 kcal (2) G-P(sol) polarization free energy of solvation -31.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.65 seconds