Wall clock time and date at job start Tue Mar 31 2020 05:59:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86803 * 120.00144 * 2 1 4 4 H 1.48503 * 109.47160 * 239.99567 * 3 2 1 5 5 H 1.48503 * 109.47233 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47351 * 119.99667 * 3 2 1 7 7 C 1.37881 * 120.00009 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99691 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99740 * 359.97438 * 7 2 1 10 10 H 1.08998 * 110.67125 * 61.78691 * 9 7 2 11 11 C 1.54888 * 110.75804 * 298.54697 * 9 7 2 12 12 C 1.54257 * 104.19825 * 203.74248 * 11 9 7 13 13 C 1.53880 * 106.59757 * 23.61084 * 12 11 9 14 14 H 1.09000 * 110.03231 * 240.66702 * 13 12 11 15 15 N 1.46505 * 110.03309 * 119.28360 * 13 12 11 16 16 C 1.34776 * 119.99811 * 86.45423 * 15 13 12 17 17 O 1.21277 * 120.00138 * 359.97438 * 16 15 13 18 18 C 1.50701 * 119.99804 * 179.97438 * 16 15 13 19 19 H 1.08992 * 109.47284 * 300.00452 * 18 16 15 20 20 C 1.52996 * 109.46990 * 179.97438 * 18 16 15 21 21 C 1.53000 * 109.47328 * 180.02562 * 20 18 16 22 22 C 1.52997 * 109.47060 * 60.00126 * 21 20 18 23 23 C 1.53006 * 109.47127 * 300.00449 * 22 21 20 24 24 H 1.09001 * 109.47002 * 299.99574 * 23 22 21 25 25 F 1.39903 * 109.46814 * 180.02562 * 23 22 21 26 26 C 1.52997 * 109.47164 * 59.99836 * 23 22 21 27 27 C 1.54263 * 106.59936 * 0.02562 * 13 12 11 28 28 H 0.97005 * 119.99930 * 0.02562 * 1 2 3 29 29 H 1.09003 * 110.48625 * 85.06113 * 11 9 7 30 30 H 1.09005 * 110.59865 * 322.48173 * 11 9 7 31 31 H 1.08998 * 110.03711 * 264.32901 * 12 11 9 32 32 H 1.09000 * 110.03294 * 142.89360 * 12 11 9 33 33 H 0.96999 * 119.99692 * 266.45678 * 15 13 12 34 34 H 1.09004 * 109.47368 * 60.00232 * 20 18 16 35 35 H 1.09001 * 109.47372 * 300.00388 * 20 18 16 36 36 H 1.09002 * 109.47398 * 180.02562 * 21 20 18 37 37 H 1.09001 * 109.47194 * 300.00476 * 21 20 18 38 38 H 1.08998 * 109.47533 * 59.99948 * 22 21 20 39 39 H 1.08996 * 109.47853 * 180.02562 * 22 21 20 40 40 H 1.09002 * 109.47045 * 180.02562 * 26 23 22 41 41 H 1.09001 * 109.47375 * 59.99966 * 26 23 22 42 42 H 1.08998 * 110.48827 * 95.06691 * 27 13 12 43 43 H 1.08994 * 110.49122 * 217.71447 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2509 -2.4992 0.0017 10 1 0.6406 -2.5919 -0.8967 11 6 0.3775 -2.6276 1.2744 12 6 0.1829 -4.1480 1.4478 13 6 1.3579 -4.8271 0.7226 14 1 0.9839 -5.4665 -0.0770 15 7 2.1433 -5.6194 1.6723 16 6 1.7892 -6.8912 1.9437 17 8 0.8202 -7.3796 1.4021 18 6 2.5974 -7.7064 2.9201 19 1 3.6236 -7.7893 2.5622 20 6 1.9864 -9.1033 3.0468 21 6 2.8065 -9.9307 4.0386 22 6 2.7972 -9.2441 5.4058 23 6 3.4082 -7.8471 5.2791 24 1 4.4345 -7.9305 4.9214 25 9 3.4002 -7.2195 6.5295 26 6 2.5881 -7.0197 4.2873 27 6 2.2260 -3.6957 0.1344 28 1 -0.4850 0.8401 -0.0004 29 1 -0.5835 -2.1341 1.1290 30 1 0.8939 -2.2081 2.1378 31 1 -0.7613 -4.4572 0.9995 32 1 0.1970 -4.4079 2.5063 33 1 2.9181 -5.2286 2.1057 34 1 1.9926 -9.5923 2.0726 35 1 0.9602 -9.0199 3.4049 36 1 2.3714 -10.9261 4.1285 37 1 3.8328 -10.0141 3.6809 38 1 1.7710 -9.1606 5.7636 39 1 3.3818 -9.8333 6.1123 40 1 3.0237 -6.0246 4.1968 41 1 1.5618 -6.9363 4.6450 42 1 3.0428 -3.4495 0.8128 43 1 2.6138 -3.9813 -0.8433 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424866689.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:45 Heat of formation + Delta-G solvation = -130.038910 kcal Electronic energy + Delta-G solvation = -22737.178756 eV Core-core repulsion = 19308.526764 eV Total energy + Delta-G solvation = -3428.651993 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.169 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -47.83987 -40.14504 -37.89445 -36.74180 -33.73338 -32.20553 -31.16802 -30.33279 -28.17815 -27.06318 -24.31566 -23.50305 -22.76639 -20.85156 -20.08659 -19.59859 -19.02059 -17.21882 -16.60656 -16.18880 -15.95579 -15.50678 -15.14216 -15.02202 -14.72719 -14.36854 -14.08759 -13.75543 -13.61073 -12.95892 -12.81198 -12.58678 -12.33270 -11.97496 -11.78597 -11.58929 -11.35145 -11.11624 -11.00795 -10.98171 -10.92734 -10.84788 -10.61772 -10.54264 -10.30102 -9.96884 -9.53615 -9.49518 -9.20564 -8.83127 -8.61733 -8.37768 -6.01736 -4.05619 2.77347 3.30617 3.36024 3.37052 3.40742 4.15730 4.19352 4.30285 4.42585 4.53984 4.75081 4.77091 4.89829 4.99279 5.11207 5.20826 5.29683 5.30220 5.53028 5.55517 5.64506 5.64909 5.70698 5.81441 5.82738 5.86480 5.96108 6.12031 6.30858 6.33818 6.58321 6.64683 6.73272 6.89002 6.91689 7.25115 7.32193 7.70771 7.78439 7.87328 8.01518 8.40651 8.45156 8.96188 9.58638 11.07272 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.026006 B = 0.003478 C = 0.003238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.427515 B = 8049.603042 C = 8645.344722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.063 3.937 3 Si 0.890 3.110 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.516 4.516 8 H 0.055 0.945 9 C 0.052 3.948 10 H 0.032 0.968 11 C -0.100 4.100 12 C -0.134 4.134 13 C 0.137 3.863 14 H 0.079 0.921 15 N -0.717 5.717 16 C 0.513 3.487 17 O -0.543 6.543 18 C -0.104 4.104 19 H 0.098 0.902 20 C -0.103 4.103 21 C -0.116 4.116 22 C -0.147 4.147 23 C 0.094 3.906 24 H 0.085 0.915 25 F -0.214 7.214 26 C -0.138 4.138 27 C -0.121 4.121 28 H 0.260 0.740 29 H 0.069 0.931 30 H 0.046 0.954 31 H 0.055 0.945 32 H 0.048 0.952 33 H 0.397 0.603 34 H 0.075 0.925 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.066 0.934 38 H 0.076 0.924 39 H 0.074 0.926 40 H 0.082 0.918 41 H 0.081 0.919 42 H 0.060 0.940 43 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.012 -17.561 9.002 20.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.139 4.139 3 Si 0.718 3.282 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.555 4.555 8 H 0.073 0.927 9 C 0.033 3.967 10 H 0.050 0.950 11 C -0.138 4.138 12 C -0.173 4.173 13 C 0.034 3.966 14 H 0.097 0.903 15 N -0.367 5.367 16 C 0.298 3.702 17 O -0.421 6.421 18 C -0.126 4.126 19 H 0.116 0.884 20 C -0.141 4.141 21 C -0.154 4.154 22 C -0.185 4.185 23 C 0.058 3.942 24 H 0.103 0.897 25 F -0.194 7.194 26 C -0.177 4.177 27 C -0.159 4.159 28 H 0.070 0.930 29 H 0.087 0.913 30 H 0.065 0.935 31 H 0.074 0.926 32 H 0.067 0.933 33 H 0.231 0.769 34 H 0.093 0.907 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.085 0.915 38 H 0.094 0.906 39 H 0.092 0.908 40 H 0.100 0.900 41 H 0.100 0.900 42 H 0.079 0.921 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 6.140 -17.759 8.626 20.676 hybrid contribution 0.818 1.262 0.342 1.543 sum 6.959 -16.497 8.968 20.025 Atomic orbital electron populations 1.69947 1.05880 1.26581 1.50212 1.24975 0.94835 0.99009 0.95046 0.86700 0.79622 0.83332 0.78553 1.20322 1.21346 1.20327 1.21056 0.92704 0.90459 1.51242 0.92715 1.19547 0.91983 0.91017 0.94135 0.94983 1.22305 1.01684 0.90317 0.99524 1.22644 0.97017 0.98868 0.98746 1.21881 0.92219 0.92019 0.90509 0.90293 1.46392 1.31968 1.12780 1.45548 1.20436 0.85069 0.82203 0.82449 1.90684 1.27967 1.71170 1.52266 1.21277 1.00970 0.96078 0.94240 0.88378 1.21398 0.99792 0.92789 1.00088 1.21501 1.00868 0.99104 0.93911 1.22165 1.02574 0.95007 0.98747 1.21553 1.00863 0.92079 0.79696 0.89742 1.92826 1.98002 1.84273 1.44332 1.22124 1.02378 0.99513 0.93641 1.22758 0.98722 0.95481 0.98938 0.92985 0.91256 0.93524 0.92644 0.93277 0.76888 0.90672 0.90836 0.90839 0.91507 0.90571 0.90760 0.89978 0.89987 0.92092 0.92892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.20 12.02 55.43 0.67 -24.53 16 2 C 0.06 1.73 5.33 -17.82 -0.10 1.63 16 3 Si 0.89 20.95 29.54 -169.99 -5.02 15.93 16 4 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.52 -13.77 8.54 -34.44 -0.29 -14.06 16 8 H 0.05 1.43 7.78 -52.49 -0.41 1.02 16 9 C 0.05 1.25 2.82 -89.76 -0.25 1.00 16 10 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 11 C -0.10 -2.29 5.56 -25.08 -0.14 -2.43 16 12 C -0.13 -2.61 6.59 -25.61 -0.17 -2.78 16 13 C 0.14 2.46 3.23 -66.81 -0.22 2.24 16 14 H 0.08 1.50 7.61 -51.93 -0.40 1.10 16 15 N -0.72 -10.37 4.88 -52.72 -0.26 -10.62 16 16 C 0.51 7.33 7.14 -10.99 -0.08 7.26 16 17 O -0.54 -9.88 15.66 5.56 0.09 -9.80 16 18 C -0.10 -1.03 2.53 -91.77 -0.23 -1.26 16 19 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 20 C -0.10 -0.97 4.49 -26.73 -0.12 -1.09 16 21 C -0.12 -0.79 5.92 -26.73 -0.16 -0.95 16 22 C -0.15 -1.08 5.66 -26.73 -0.15 -1.23 16 23 C 0.09 0.79 3.87 -26.73 -0.10 0.69 16 24 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 25 F -0.21 -2.38 17.08 2.25 0.04 -2.35 16 26 C -0.14 -1.31 4.83 -26.73 -0.13 -1.44 16 27 C -0.12 -2.35 5.94 -25.06 -0.15 -2.49 16 28 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 29 H 0.07 1.75 7.37 -51.93 -0.38 1.37 16 30 H 0.05 1.10 8.04 -51.93 -0.42 0.68 16 31 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.05 0.91 7.92 -51.93 -0.41 0.50 16 33 H 0.40 4.82 7.75 -40.82 -0.32 4.50 16 34 H 0.07 0.76 8.10 -51.93 -0.42 0.34 16 35 H 0.07 0.79 8.10 -51.93 -0.42 0.37 16 36 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 38 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.08 0.76 7.56 -51.93 -0.39 0.36 16 41 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.06 1.13 7.63 -51.93 -0.40 0.74 16 43 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 LS Contribution 340.57 15.07 5.13 5.13 Total: -1.00 -30.11 340.57 -8.97 -39.08 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: -7.32 Total: 2.08 kcal Atomic # 6 Polarization: -12.63 SS G_CDS: -2.29 Total: -14.92 kcal Atomic # 7 Polarization: -35.56 SS G_CDS: 0.41 Total: -35.15 kcal Atomic # 8 Polarization: -9.88 SS G_CDS: 0.09 Total: -9.80 kcal Atomic # 9 Polarization: -2.38 SS G_CDS: 0.04 Total: -2.35 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -30.11 -8.97 -39.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424866689.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.963 kcal (2) G-P(sol) polarization free energy of solvation -30.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds