Wall clock time and date at job start Tue Mar 31 2020 05:27:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42904 * 114.00236 * 2 1 4 4 C 1.52998 * 109.47042 * 180.02562 * 3 2 1 5 5 N 1.46501 * 109.47200 * 65.00228 * 4 3 2 6 6 C 1.37091 * 119.99829 * 264.46725 * 5 4 3 7 7 H 1.08004 * 120.00106 * 138.27186 * 6 5 4 8 8 C 1.38952 * 120.00325 * 318.26547 * 6 5 4 9 9 N 1.31410 * 119.99539 * 341.89356 * 8 6 5 10 10 Si 1.86792 * 119.99999 * 161.88540 * 8 6 5 11 11 H 1.48494 * 109.47521 * 0.02562 * 10 8 6 12 12 H 1.48505 * 109.47148 * 120.00388 * 10 8 6 13 13 H 1.48503 * 109.47093 * 240.00007 * 10 8 6 14 14 C 1.34780 * 119.99674 * 84.46894 * 5 4 3 15 15 O 1.21292 * 120.00317 * 359.97438 * 14 5 4 16 16 C 1.50696 * 119.99524 * 180.02562 * 14 5 4 17 17 C 1.53004 * 109.47289 * 179.97438 * 16 14 5 18 18 C 1.52997 * 109.47475 * 179.97438 * 17 16 14 19 19 C 1.50700 * 109.47071 * 179.97438 * 18 17 16 20 20 O 1.20754 * 120.00142 * 0.02562 * 19 18 17 21 21 C 1.50700 * 119.99776 * 180.02562 * 19 18 17 22 22 C 1.52998 * 117.49978 * 223.74925 * 21 19 18 23 23 C 1.53002 * 117.49721 * 155.09223 * 21 19 18 24 24 H 1.09002 * 109.47262 * 59.99689 * 1 2 3 25 25 H 1.09002 * 109.47116 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.46799 * 299.99680 * 1 2 3 27 27 H 1.09002 * 109.46792 * 60.00178 * 3 2 1 28 28 H 1.09004 * 109.46964 * 300.00456 * 3 2 1 29 29 H 1.08995 * 109.47549 * 304.99705 * 4 3 2 30 30 H 1.09008 * 109.46628 * 185.00239 * 4 3 2 31 31 H 0.96999 * 119.99816 * 180.02562 * 9 8 6 32 32 H 1.09002 * 109.47418 * 59.99977 * 16 14 5 33 33 H 1.09003 * 109.47503 * 299.99394 * 16 14 5 34 34 H 1.09002 * 109.46725 * 59.99778 * 17 16 14 35 35 H 1.09002 * 109.47007 * 300.00452 * 17 16 14 36 36 H 1.09002 * 109.46971 * 60.00363 * 18 17 16 37 37 H 1.08997 * 109.47265 * 300.00378 * 18 17 16 38 38 H 1.08993 * 115.55268 * 9.42314 * 21 19 18 39 39 H 1.09007 * 117.49773 * 0.02562 * 22 21 19 40 40 H 1.09005 * 117.50317 * 145.01831 * 22 21 19 41 41 H 1.09002 * 117.49837 * 214.98041 * 23 21 19 42 42 H 1.09000 * 117.49937 * 359.97283 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9757 0.5644 -1.2528 6 6 4.2061 -0.7860 -1.3048 7 1 3.8776 -1.3573 -2.1605 8 6 4.8623 -1.4199 -0.2568 9 7 5.5681 -0.7149 0.5987 10 14 4.7409 -3.2738 -0.0637 11 1 3.8933 -3.8301 -1.1487 12 1 6.0989 -3.8697 -0.1422 13 1 4.1345 -3.5957 1.2531 14 6 4.1541 1.3215 -2.3534 15 8 3.9499 2.5162 -2.3075 16 6 4.6064 0.6834 -3.6416 17 6 4.7295 1.7555 -4.7262 18 6 5.1893 1.1078 -6.0338 19 6 5.3099 2.1638 -7.1022 20 8 5.0549 3.3156 -6.8442 21 6 5.7487 1.7823 -8.4925 22 6 6.7752 2.6836 -9.1816 23 6 5.3161 2.6918 -9.6443 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 1.6887 1.8463 0.8900 28 1 1.6886 1.8464 -0.8900 29 1 3.8515 0.5682 0.8409 30 1 3.9785 2.1765 0.0890 31 1 6.0264 -1.1574 1.3301 32 1 3.8771 -0.0649 -3.9520 33 1 5.5747 0.2063 -3.4904 34 1 5.4585 2.5041 -4.4159 35 1 3.7610 2.2324 -4.8773 36 1 4.4605 0.3591 -6.3442 37 1 6.1578 0.6313 -5.8824 38 1 5.8054 0.7120 -8.6905 39 1 7.1334 3.5523 -8.6291 40 1 7.5071 2.2063 -9.8331 41 1 5.0887 2.2199 -10.6001 42 1 4.7138 3.5658 -9.3965 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457208564.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:50 Heat of formation + Delta-G solvation = -120.623923 kcal Electronic energy + Delta-G solvation = -22412.428222 eV Core-core repulsion = 18971.811705 eV Total energy + Delta-G solvation = -3440.616518 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -40.97455 -40.46841 -38.59856 -37.08724 -36.60086 -35.11954 -33.49282 -31.39203 -29.61573 -27.27709 -26.64496 -25.69175 -23.70338 -23.33483 -22.09709 -20.87323 -20.21356 -18.70686 -17.88486 -17.46855 -17.25601 -16.93429 -16.73167 -16.25192 -16.07996 -15.98454 -15.69072 -15.43383 -15.14242 -14.44752 -14.31721 -13.66698 -13.58124 -13.32345 -13.07554 -12.91077 -12.80758 -12.63331 -12.50910 -12.49516 -12.43279 -12.20411 -11.99515 -11.77322 -11.64638 -11.53518 -11.42187 -10.98392 -10.58842 -10.54242 -10.24180 -9.37901 -8.22680 -5.99907 0.92631 1.46155 1.53210 1.64698 2.08188 2.38922 2.83167 2.93853 2.98191 3.10702 3.25219 3.83284 3.99387 3.99865 4.14980 4.15163 4.23554 4.27366 4.33390 4.49071 4.51740 4.57669 4.60099 4.72266 4.72807 4.73941 4.79354 4.82456 4.89588 4.96771 5.05362 5.13424 5.20247 5.26368 5.31178 5.44273 5.56474 6.09591 6.38661 6.47609 6.62712 7.22046 7.65013 8.09047 8.82810 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.017852 B = 0.003860 C = 0.003478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.031942 B = 7252.725546 C = 8049.115523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.396 6.396 3 C 0.065 3.935 4 C 0.118 3.882 5 N -0.442 5.442 6 C -0.332 4.332 7 H 0.094 0.906 8 C 0.006 3.994 9 N -0.901 5.901 10 Si 0.981 3.019 11 H -0.256 1.256 12 H -0.279 1.279 13 H -0.286 1.286 14 C 0.451 3.549 15 O -0.643 6.643 16 C -0.105 4.105 17 C -0.083 4.083 18 C -0.158 4.158 19 C 0.379 3.621 20 O -0.504 6.504 21 C -0.224 4.224 22 C -0.149 4.149 23 C -0.155 4.155 24 H 0.038 0.962 25 H 0.097 0.903 26 H 0.051 0.949 27 H 0.065 0.935 28 H 0.030 0.970 29 H 0.087 0.913 30 H 0.051 0.949 31 H 0.269 0.731 32 H 0.097 0.903 33 H 0.093 0.907 34 H 0.038 0.962 35 H 0.042 0.958 36 H 0.128 0.872 37 H 0.124 0.876 38 H 0.158 0.842 39 H 0.080 0.920 40 H 0.132 0.868 41 H 0.131 0.869 42 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.923 -3.107 -13.913 14.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.315 6.315 3 C -0.013 4.013 4 C -0.006 4.006 5 N -0.160 5.160 6 C -0.460 4.460 7 H 0.112 0.888 8 C -0.196 4.196 9 N -0.538 5.538 10 Si 0.806 3.194 11 H -0.179 1.179 12 H -0.205 1.205 13 H -0.212 1.212 14 C 0.242 3.758 15 O -0.532 6.532 16 C -0.144 4.144 17 C -0.121 4.121 18 C -0.195 4.195 19 C 0.259 3.741 20 O -0.381 6.381 21 C -0.243 4.243 22 C -0.186 4.186 23 C -0.192 4.192 24 H 0.057 0.943 25 H 0.115 0.885 26 H 0.069 0.931 27 H 0.083 0.917 28 H 0.048 0.952 29 H 0.105 0.895 30 H 0.069 0.931 31 H 0.078 0.922 32 H 0.115 0.885 33 H 0.112 0.888 34 H 0.056 0.944 35 H 0.061 0.939 36 H 0.146 0.854 37 H 0.142 0.858 38 H 0.176 0.824 39 H 0.099 0.901 40 H 0.151 0.849 41 H 0.149 0.851 42 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -1.941 -2.143 -13.556 13.861 hybrid contribution -0.218 -0.184 0.886 0.931 sum -2.159 -2.327 -12.670 13.062 Atomic orbital electron populations 1.22903 0.80579 1.03490 1.00195 1.88050 1.20512 1.27589 1.95302 1.22795 0.94503 0.84681 0.99310 1.21254 0.91339 0.97390 0.90608 1.43557 1.56849 1.07747 1.07853 1.19574 1.36328 0.82191 1.07919 0.88795 1.26159 0.93185 1.03911 0.96327 1.70050 1.28791 1.38368 1.16628 0.85062 0.77864 0.78091 0.78405 1.17918 1.20530 1.21203 1.21450 0.80005 0.86165 0.88150 1.90490 1.58710 1.17056 1.86931 1.21295 1.03488 0.98548 0.91111 1.20977 1.00706 0.96747 0.93686 1.22117 1.06059 0.98810 0.92533 1.24422 0.70370 0.88724 0.90628 1.90398 1.39833 1.24221 1.83652 1.22985 1.08351 1.01390 0.91563 1.23035 0.92937 1.00348 1.02240 1.23036 0.97813 1.00620 0.97686 0.94332 0.88470 0.93081 0.91694 0.95200 0.89483 0.93058 0.92199 0.88468 0.88845 0.94355 0.93864 0.85383 0.85784 0.82404 0.90104 0.84946 0.85131 0.90114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.75 11.01 113.37 1.25 1.99 16 2 O -0.40 -16.75 10.44 -148.98 -1.56 -18.30 16 3 C 0.06 2.78 6.24 71.98 0.45 3.23 16 4 C 0.12 5.96 5.26 86.38 0.45 6.42 16 5 N -0.44 -22.97 2.45 -635.54 -1.56 -24.53 16 6 C -0.33 -16.83 8.29 84.04 0.70 -16.14 16 7 H 0.09 4.48 7.21 -2.91 -0.02 4.46 16 8 C 0.01 0.33 4.95 84.93 0.42 0.75 16 9 N -0.90 -48.75 11.66 21.66 0.25 -48.50 16 10 Si 0.98 40.02 29.59 68.60 2.03 42.05 16 11 H -0.26 -9.81 7.11 99.48 0.71 -9.10 16 12 H -0.28 -11.10 7.11 99.48 0.71 -10.39 16 13 H -0.29 -11.84 7.11 99.48 0.71 -11.13 16 14 C 0.45 22.89 7.60 87.66 0.67 23.55 16 15 O -0.64 -36.16 15.66 -3.07 -0.05 -36.21 16 16 C -0.10 -4.12 4.43 29.85 0.13 -3.99 16 17 C -0.08 -3.01 3.79 30.59 0.12 -2.89 16 18 C -0.16 -3.82 5.64 29.85 0.17 -3.65 16 19 C 0.38 9.86 6.92 29.10 0.20 10.06 16 20 O -0.50 -18.01 16.05 -1.43 -0.02 -18.04 16 21 C -0.22 -3.85 6.12 -11.54 -0.07 -3.92 16 22 C -0.15 -2.35 10.14 30.62 0.31 -2.04 16 23 C -0.15 -2.50 10.05 30.62 0.31 -2.19 16 24 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 25 H 0.10 2.54 8.14 -2.39 -0.02 2.52 16 26 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 27 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 28 H 0.03 1.34 8.14 -2.38 -0.02 1.32 16 29 H 0.09 4.68 5.81 -2.39 -0.01 4.67 16 30 H 0.05 2.68 7.60 -2.38 -0.02 2.66 16 31 H 0.27 13.72 8.31 -92.71 -0.77 12.95 16 32 H 0.10 3.41 7.71 -2.39 -0.02 3.39 16 33 H 0.09 3.55 8.10 -2.39 -0.02 3.53 16 34 H 0.04 1.59 8.06 -2.39 -0.02 1.57 16 35 H 0.04 1.74 8.06 -2.39 -0.02 1.72 16 36 H 0.13 2.34 8.14 -2.39 -0.02 2.33 16 37 H 0.12 2.42 8.14 -2.39 -0.02 2.41 16 38 H 0.16 1.67 8.14 -2.39 -0.02 1.65 16 39 H 0.08 1.61 8.14 -2.38 -0.02 1.59 16 40 H 0.13 1.31 8.14 -2.38 -0.02 1.29 16 41 H 0.13 1.35 8.14 -2.39 -0.02 1.33 16 42 H 0.08 1.68 7.89 -2.39 -0.02 1.66 16 Total: -1.00 -72.34 355.90 5.18 -67.15 By element: Atomic # 1 Polarization: 24.20 SS G_CDS: 0.99 Total: 25.19 kcal Atomic # 6 Polarization: 6.09 SS G_CDS: 5.10 Total: 11.19 kcal Atomic # 7 Polarization: -71.72 SS G_CDS: -1.31 Total: -73.03 kcal Atomic # 8 Polarization: -70.92 SS G_CDS: -1.63 Total: -72.55 kcal Atomic # 14 Polarization: 40.02 SS G_CDS: 2.03 Total: 42.05 kcal Total: -72.34 5.18 -67.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457208564.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.470 kcal (2) G-P(sol) polarization free energy of solvation -72.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds