Wall clock time and date at job start Tue Mar 31 2020 06:11:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53008 * 109.47412 * 2 1 4 4 C 1.50698 * 109.47333 * 239.99775 * 2 1 3 5 5 H 1.07998 * 120.00282 * 240.00104 * 4 2 1 6 6 C 1.37883 * 119.99916 * 60.00297 * 4 2 1 7 7 N 1.31510 * 119.99563 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 119.99838 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47425 * 60.00012 * 8 6 4 10 10 H 1.48501 * 109.46949 * 179.97438 * 8 6 4 11 11 H 1.48492 * 109.47248 * 299.99644 * 8 6 4 12 12 C 1.53006 * 109.47115 * 119.99948 * 2 1 3 13 13 N 1.46904 * 109.46736 * 299.99869 * 12 2 1 14 14 C 1.46904 * 110.99767 * 179.97438 * 13 12 2 15 15 C 1.50692 * 109.47331 * 180.02562 * 14 13 12 16 16 C 1.36126 * 120.17475 * 259.72540 * 15 14 13 17 17 C 1.39326 * 120.99691 * 180.32288 * 16 15 14 18 18 C 1.36133 * 120.98585 * 359.92630 * 17 16 15 19 19 C 1.40506 * 119.64915 * 0.04221 * 18 17 16 20 20 C 1.40545 * 121.27499 * 180.02562 * 19 18 17 21 21 C 1.36087 * 119.64756 * 179.97438 * 20 19 18 22 22 C 1.39378 * 120.99501 * 0.02562 * 21 20 19 23 23 C 1.36094 * 120.99655 * 359.95499 * 22 21 20 24 24 C 1.40505 * 120.17411 * 79.99838 * 15 14 13 25 25 H 1.09002 * 109.47019 * 300.00470 * 1 2 3 26 26 H 1.09004 * 109.46858 * 60.00140 * 1 2 3 27 27 H 1.08998 * 109.47562 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47086 * 179.97438 * 3 2 1 29 29 H 1.08995 * 109.46582 * 300.00170 * 3 2 1 30 30 H 1.08998 * 109.46523 * 59.99714 * 3 2 1 31 31 H 0.97002 * 119.99416 * 180.02562 * 7 6 4 32 32 H 1.08998 * 109.47035 * 180.02562 * 12 2 1 33 33 H 1.08994 * 109.46994 * 60.00083 * 12 2 1 34 34 H 1.00900 * 111.00295 * 303.95430 * 13 12 2 35 35 H 1.09000 * 109.47024 * 59.99760 * 14 13 12 36 36 H 1.09000 * 109.47278 * 300.00550 * 14 13 12 37 37 H 1.08006 * 119.50105 * 0.27486 * 16 15 14 38 38 H 1.08001 * 119.51155 * 179.97438 * 17 16 15 39 39 H 1.07997 * 120.17487 * 180.02562 * 18 17 16 40 40 H 1.07997 * 120.18005 * 359.95770 * 20 19 18 41 41 H 1.08005 * 119.50597 * 179.97438 * 21 20 19 42 42 H 1.07998 * 119.50663 * 179.97438 * 22 21 20 43 43 H 1.07996 * 120.17629 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3214 -1.1204 -4.0079 9 1 1.8259 -2.5203 -4.0077 10 1 1.8261 -0.4207 -5.2204 11 1 3.8063 -1.1210 -4.0081 12 6 2.0399 -0.7213 1.2493 13 7 1.5502 -0.0287 2.4487 14 6 2.0208 -0.6951 3.6704 15 6 1.4992 0.0415 4.8771 16 6 2.3048 0.9072 5.5513 17 6 1.8425 1.5921 6.6731 18 6 0.5710 1.4167 7.1266 19 6 -0.2902 0.5316 6.4563 20 6 -1.6095 0.3250 6.8946 21 6 -2.4153 -0.5396 6.2199 22 6 -1.9524 -1.2259 5.0986 23 6 -0.6813 -1.0508 4.6451 24 6 0.1806 -0.1660 5.3157 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6766 1.9563 0.8900 31 1 0.7082 1.1608 -3.4844 32 1 3.1299 -0.7209 1.2495 33 1 1.6766 -1.7489 1.2493 34 1 1.8197 0.9437 2.4402 35 1 3.1106 -0.6954 3.6874 36 1 1.6570 -1.7225 3.6870 37 1 3.3180 1.0648 5.2121 38 1 2.5024 2.2730 7.1901 39 1 0.2261 1.9547 7.9972 40 1 -1.9817 0.8493 7.7622 41 1 -3.4286 -0.6970 6.5590 42 1 -2.6124 -1.9067 4.5817 43 1 -0.3365 -1.5891 3.7746 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459701536.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:40 Heat of formation + Delta-G solvation = 34.395504 kcal Electronic energy + Delta-G solvation = -21797.441565 eV Core-core repulsion = 18806.689208 eV Total energy + Delta-G solvation = -2990.752356 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.163 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.37737 -37.15235 -36.33015 -34.43677 -32.36513 -30.70254 -30.20729 -29.14057 -25.68687 -25.54121 -25.15534 -23.30951 -22.88049 -22.86763 -20.46493 -18.45495 -17.43889 -16.94485 -16.16035 -15.85068 -15.14523 -14.71330 -14.34407 -14.20905 -14.06355 -13.43548 -13.32566 -13.22905 -12.85906 -12.52597 -12.38281 -12.11067 -11.86789 -11.60292 -11.24595 -11.12329 -10.98092 -10.86446 -10.69237 -10.61973 -10.46359 -10.16570 -10.05061 -9.75122 -9.37146 -9.07105 -8.62142 -8.52442 -8.27772 -7.84381 -7.63622 -5.89864 -4.00482 0.62099 1.10636 2.14564 3.07609 3.33252 3.38213 3.40663 4.18455 4.45111 4.63049 4.81681 4.87801 4.98712 5.10777 5.15536 5.24331 5.35463 5.42134 5.48538 5.52529 5.65376 5.75939 5.97056 6.09660 6.19991 6.30069 6.30284 6.35559 6.39864 6.52390 6.62034 6.72753 6.78409 6.89969 6.94724 7.09226 7.10681 7.18025 7.40426 7.48012 7.71876 7.77187 7.83977 7.95953 8.22279 8.36064 8.56844 9.00760 9.64415 11.10533 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.025890 B = 0.003777 C = 0.003526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.237707 B = 7411.364715 C = 7938.008015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.070 3.930 3 C -0.132 4.132 4 C -0.508 4.508 5 H 0.051 0.949 6 C 0.066 3.934 7 N -0.884 5.884 8 Si 0.888 3.112 9 H -0.278 1.278 10 H -0.288 1.288 11 H -0.279 1.279 12 C 0.075 3.925 13 N -0.679 5.679 14 C 0.092 3.908 15 C -0.053 4.053 16 C -0.123 4.123 17 C -0.112 4.112 18 C -0.116 4.116 19 C -0.052 4.052 20 C -0.119 4.119 21 C -0.113 4.113 22 C -0.129 4.129 23 C -0.079 4.079 24 C -0.036 4.036 25 H 0.020 0.980 26 H 0.073 0.927 27 H 0.017 0.983 28 H 0.018 0.982 29 H 0.083 0.917 30 H 0.011 0.989 31 H 0.258 0.742 32 H 0.014 0.986 33 H 0.056 0.944 34 H 0.340 0.660 35 H 0.033 0.967 36 H 0.077 0.923 37 H 0.119 0.881 38 H 0.119 0.881 39 H 0.122 0.878 40 H 0.122 0.878 41 H 0.118 0.882 42 H 0.121 0.879 43 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.060 -0.302 18.661 18.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.069 3.931 3 C -0.190 4.190 4 C -0.546 4.546 5 H 0.069 0.931 6 C -0.135 4.135 7 N -0.523 5.523 8 Si 0.717 3.283 9 H -0.204 1.204 10 H -0.214 1.214 11 H -0.205 1.205 12 C -0.053 4.053 13 N -0.311 5.311 14 C -0.037 4.037 15 C -0.054 4.054 16 C -0.142 4.142 17 C -0.130 4.130 18 C -0.135 4.135 19 C -0.052 4.052 20 C -0.137 4.137 21 C -0.131 4.131 22 C -0.147 4.147 23 C -0.097 4.097 24 C -0.036 4.036 25 H 0.039 0.961 26 H 0.092 0.908 27 H 0.036 0.964 28 H 0.037 0.963 29 H 0.102 0.898 30 H 0.029 0.971 31 H 0.069 0.931 32 H 0.032 0.968 33 H 0.075 0.925 34 H 0.159 0.841 35 H 0.051 0.949 36 H 0.096 0.904 37 H 0.137 0.863 38 H 0.137 0.863 39 H 0.140 0.860 40 H 0.139 0.861 41 H 0.136 0.864 42 H 0.139 0.861 43 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -2.743 -0.522 18.489 18.699 hybrid contribution 1.306 -0.157 -0.882 1.584 sum -1.437 -0.679 17.607 17.679 Atomic orbital electron populations 1.21630 0.97360 0.98507 1.00111 1.18083 0.93219 0.91939 0.89855 1.21832 0.97645 0.99205 1.00299 1.21068 1.31195 1.11878 0.90498 0.93082 1.24880 0.95021 0.94960 0.98656 1.69828 1.36672 1.22788 1.22995 0.86726 0.79079 0.79847 0.82682 1.20413 1.21373 1.20495 1.22189 0.95567 0.97823 0.89757 1.60662 1.63465 1.06504 1.00455 1.20910 0.96626 0.97993 0.88196 1.19809 0.92871 0.96764 0.95917 1.20753 0.99996 0.97259 0.96153 1.20773 0.96010 0.99532 0.96715 1.20945 0.93966 0.98598 0.99948 1.18095 0.94352 0.97310 0.95436 1.20921 0.93035 0.99434 1.00278 1.20832 0.99558 0.96846 0.95869 1.20871 0.96351 1.00527 0.96973 1.21234 0.93369 0.96573 0.98502 1.17918 0.93781 0.97151 0.94745 0.96075 0.90799 0.96360 0.96267 0.89848 0.97053 0.93148 0.96816 0.92506 0.84113 0.94884 0.90447 0.86262 0.86270 0.86010 0.86052 0.86388 0.86133 0.84632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.89 8.09 37.15 0.30 -2.59 16 2 C 0.07 1.68 0.57 -155.66 -0.09 1.59 16 3 C -0.13 -3.13 7.92 37.16 0.29 -2.84 16 4 C -0.51 -13.62 8.01 -34.44 -0.28 -13.89 16 5 H 0.05 1.36 7.74 -52.49 -0.41 0.96 16 6 C 0.07 1.78 5.15 -17.82 -0.09 1.69 16 7 N -0.88 -24.52 9.35 55.43 0.52 -24.00 16 8 Si 0.89 21.10 29.54 -169.99 -5.02 16.08 16 9 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 10 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 12 C 0.07 1.54 4.59 -3.82 -0.02 1.52 16 13 N -0.68 -12.03 5.70 -115.06 -0.66 -12.69 16 14 C 0.09 1.37 5.07 -4.98 -0.03 1.34 16 15 C -0.05 -0.76 5.40 -104.53 -0.56 -1.32 16 16 C -0.12 -1.55 9.57 -39.94 -0.38 -1.94 16 17 C -0.11 -1.27 9.95 -39.93 -0.40 -1.67 16 18 C -0.12 -1.34 9.77 -39.48 -0.39 -1.72 16 19 C -0.05 -0.69 5.74 -106.83 -0.61 -1.30 16 20 C -0.12 -1.37 9.77 -39.49 -0.39 -1.75 16 21 C -0.11 -1.28 9.95 -39.93 -0.40 -1.68 16 22 C -0.13 -1.62 9.95 -39.93 -0.40 -2.02 16 23 C -0.08 -1.13 9.29 -39.48 -0.37 -1.50 16 24 C -0.04 -0.52 5.74 -106.83 -0.61 -1.13 16 25 H 0.02 0.47 7.60 -51.93 -0.39 0.08 16 26 H 0.07 1.98 6.07 -51.93 -0.32 1.67 16 27 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.08 2.20 6.07 -51.93 -0.32 1.88 16 30 H 0.01 0.23 6.57 -51.93 -0.34 -0.11 16 31 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 32 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.34 6.15 6.76 -39.29 -0.27 5.88 16 35 H 0.03 0.47 7.98 -51.93 -0.41 0.06 16 36 H 0.08 1.13 7.01 -51.93 -0.36 0.76 16 37 H 0.12 1.33 8.00 -52.48 -0.42 0.91 16 38 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 39 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 40 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 41 H 0.12 1.03 8.06 -52.48 -0.42 0.60 16 42 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 43 H 0.14 2.00 6.61 -52.49 -0.35 1.66 16 LS Contribution 342.01 15.07 5.15 5.15 Total: -1.00 -28.15 342.01 -10.94 -39.08 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: -6.52 Total: 5.58 kcal Atomic # 6 Polarization: -24.80 SS G_CDS: -4.41 Total: -29.21 kcal Atomic # 7 Polarization: -36.55 SS G_CDS: -0.14 Total: -36.69 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -28.15 -10.94 -39.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459701536.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.480 kcal (2) G-P(sol) polarization free energy of solvation -28.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.085 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds