Wall clock time and date at job start Tue Mar 31 2020 06:19:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47279 * 2 1 4 4 N 1.46500 * 109.47090 * 180.02562 * 3 2 1 5 5 C 1.36932 * 120.00205 * 94.29349 * 4 3 2 6 6 H 1.08009 * 120.00119 * 215.12941 * 5 4 3 7 7 C 1.38810 * 120.00048 * 34.85114 * 5 4 3 8 8 N 1.31621 * 119.99730 * 22.21157 * 7 5 4 9 9 Si 1.86804 * 119.99990 * 202.20442 * 7 5 4 10 10 H 1.48504 * 109.46853 * 90.00446 * 9 7 5 11 11 H 1.48503 * 109.46981 * 210.00105 * 9 7 5 12 12 H 1.48494 * 109.47242 * 330.00250 * 9 7 5 13 13 C 1.46507 * 119.99885 * 274.29383 * 4 3 2 14 14 C 1.50698 * 109.46788 * 270.00067 * 13 4 3 15 15 C 1.36124 * 120.17384 * 274.36042 * 14 13 4 16 16 C 1.50700 * 119.50304 * 0.02562 * 15 14 13 17 17 C 1.39334 * 120.99457 * 179.77748 * 15 14 13 18 18 C 1.36123 * 120.98775 * 0.48115 * 17 15 14 19 19 C 1.40509 * 119.64845 * 359.77543 * 18 17 15 20 20 C 1.40546 * 121.27840 * 180.02562 * 19 18 17 21 21 C 1.36083 * 119.65427 * 179.97438 * 20 19 18 22 22 C 1.39383 * 120.98781 * 0.02562 * 21 20 19 23 23 C 1.36088 * 121.00107 * 359.95936 * 22 21 20 24 24 C 1.40497 * 120.17310 * 94.64212 * 14 13 4 25 25 H 1.09003 * 109.46931 * 59.99829 * 1 2 3 26 26 H 1.08996 * 109.47651 * 180.02562 * 1 2 3 27 27 H 1.09008 * 109.47214 * 300.00277 * 1 2 3 28 28 H 1.08999 * 109.47267 * 239.99568 * 2 1 3 29 29 H 1.09003 * 109.46931 * 120.00171 * 2 1 3 30 30 H 1.08995 * 109.47055 * 60.00303 * 3 2 1 31 31 H 1.08997 * 109.46873 * 299.99887 * 3 2 1 32 32 H 0.96999 * 119.99847 * 180.02562 * 8 7 5 33 33 H 1.08998 * 109.47089 * 30.00149 * 13 4 3 34 34 H 1.09000 * 109.47079 * 150.00003 * 13 4 3 35 35 H 1.08998 * 109.47207 * 84.44611 * 16 15 14 36 36 H 1.08998 * 109.47390 * 204.44504 * 16 15 14 37 37 H 1.09002 * 109.47399 * 324.44598 * 16 15 14 38 38 H 1.08007 * 119.50744 * 180.23950 * 17 15 14 39 39 H 1.07996 * 120.17954 * 179.80610 * 18 17 15 40 40 H 1.07997 * 120.17160 * 359.97438 * 20 19 18 41 41 H 1.07997 * 119.51223 * 180.02562 * 21 20 19 42 42 H 1.08006 * 119.50385 * 179.97438 * 22 21 20 43 43 H 1.07999 * 120.17897 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.1892 1.5314 -1.1834 6 1 5.1217 1.0010 -1.3091 7 6 3.6815 2.2985 -2.2229 8 7 2.8224 3.2631 -1.9702 9 14 4.2177 1.9619 -3.9804 10 1 3.3009 0.9690 -4.5960 11 1 4.1761 3.2245 -4.7610 12 1 5.6021 1.4247 -3.9813 13 6 4.2380 1.3472 1.2643 14 6 4.4894 2.7314 1.8045 15 6 5.5773 3.4391 1.3938 16 6 6.5264 2.8280 0.3954 17 6 5.8237 4.7219 1.8786 18 6 4.9889 5.3010 2.7845 19 6 3.8585 4.5992 3.2360 20 6 2.9736 5.1645 4.1702 21 6 1.8885 4.4555 4.5844 22 6 1.6397 3.1738 4.0963 23 6 2.4742 2.5944 3.1907 24 6 3.6054 3.2959 2.7393 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 1.8932 -0.5139 0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 2.4673 3.7990 -2.6967 33 1 3.6492 0.7779 1.9835 34 1 5.1903 0.8446 1.0954 35 1 6.1508 2.9973 -0.6137 36 1 7.5090 3.2883 0.4993 37 1 6.6060 1.7564 0.5784 38 1 6.6921 5.2633 1.5334 39 1 5.1941 6.2949 3.1540 40 1 3.1539 6.1565 4.5573 41 1 1.2098 4.8922 5.3020 42 1 0.7714 2.6323 4.4417 43 1 2.2685 1.6008 2.8210 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000483394621.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:26 Heat of formation + Delta-G solvation = 49.645643 kcal Electronic energy + Delta-G solvation = -22895.028378 eV Core-core repulsion = 19904.937317 eV Total energy + Delta-G solvation = -2990.091061 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.163 amu Computer time = 8.98 seconds Orbital eigenvalues (eV) -39.95000 -36.75767 -35.80025 -33.02711 -32.35787 -31.02544 -30.64812 -28.98395 -26.63081 -25.62948 -25.15121 -22.70321 -22.15401 -21.35897 -20.55383 -19.32592 -16.86375 -16.64559 -16.28433 -15.39406 -14.89958 -14.25408 -14.05556 -13.78358 -13.73660 -13.33294 -13.04710 -12.95558 -12.76065 -12.42385 -12.27587 -12.06860 -11.61769 -11.42325 -11.26873 -11.15532 -10.92165 -10.76328 -10.68536 -10.50190 -10.38057 -10.24583 -9.99523 -9.92565 -9.80884 -9.45469 -9.18184 -8.46280 -7.86396 -7.13891 -6.60283 -5.80480 -3.32131 1.14962 1.63846 2.68360 3.33633 3.41900 3.42393 3.58790 4.44458 4.72242 5.12954 5.28766 5.29697 5.40765 5.52131 5.56228 5.58339 5.75563 5.84077 5.85888 5.93384 5.96548 6.00882 6.16911 6.23075 6.28631 6.33528 6.38831 6.53879 6.60738 6.62404 6.70916 6.73799 6.78426 6.86935 6.90324 6.92054 6.98718 7.08845 7.17233 7.28280 7.43006 7.55580 7.72067 7.74652 7.81145 8.47389 9.14971 9.77668 10.35423 11.18706 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.014628 B = 0.007351 C = 0.005621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1913.661633 B = 3807.985037 C = 4980.105443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.141 4.141 3 C 0.142 3.858 4 N -0.568 5.568 5 C -0.251 4.251 6 H 0.065 0.935 7 C 0.012 3.988 8 N -0.877 5.877 9 Si 0.892 3.108 10 H -0.286 1.286 11 H -0.292 1.292 12 H -0.277 1.277 13 C 0.170 3.830 14 C -0.063 4.063 15 C -0.072 4.072 16 C -0.108 4.108 17 C -0.100 4.100 18 C -0.137 4.137 19 C -0.053 4.053 20 C -0.115 4.115 21 C -0.126 4.126 22 C -0.138 4.138 23 C -0.090 4.090 24 C -0.037 4.037 25 H 0.050 0.950 26 H 0.039 0.961 27 H 0.045 0.955 28 H 0.056 0.944 29 H 0.040 0.960 30 H 0.026 0.974 31 H 0.096 0.904 32 H 0.254 0.746 33 H 0.044 0.956 34 H 0.058 0.942 35 H 0.091 0.909 36 H 0.041 0.959 37 H 0.063 0.937 38 H 0.111 0.889 39 H 0.114 0.886 40 H 0.116 0.884 41 H 0.112 0.888 42 H 0.113 0.887 43 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.555 -0.069 9.622 9.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.180 4.180 3 C 0.016 3.984 4 N -0.286 5.286 5 C -0.381 4.381 6 H 0.082 0.918 7 C -0.189 4.189 8 N -0.518 5.518 9 Si 0.722 3.278 10 H -0.213 1.213 11 H -0.218 1.218 12 H -0.202 1.202 13 C 0.045 3.955 14 C -0.066 4.066 15 C -0.073 4.073 16 C -0.165 4.165 17 C -0.118 4.118 18 C -0.155 4.155 19 C -0.054 4.054 20 C -0.133 4.133 21 C -0.144 4.144 22 C -0.156 4.156 23 C -0.108 4.108 24 C -0.038 4.038 25 H 0.069 0.931 26 H 0.059 0.941 27 H 0.064 0.936 28 H 0.075 0.925 29 H 0.058 0.942 30 H 0.045 0.955 31 H 0.114 0.886 32 H 0.064 0.936 33 H 0.063 0.937 34 H 0.076 0.924 35 H 0.110 0.890 36 H 0.060 0.940 37 H 0.081 0.919 38 H 0.129 0.871 39 H 0.132 0.868 40 H 0.134 0.866 41 H 0.130 0.870 42 H 0.131 0.869 43 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 0.469 0.020 9.468 9.480 hybrid contribution 0.042 0.247 -1.033 1.063 sum 0.511 0.267 8.436 8.455 Atomic orbital electron populations 1.21690 0.97520 0.99912 1.01143 1.22096 0.93707 1.01660 1.00579 1.21068 0.83099 0.92058 1.02141 1.44042 1.01020 1.83438 1.00091 1.19075 1.07053 1.22774 0.89215 0.91786 1.25142 0.99841 0.94959 0.98981 1.70025 1.33096 1.17824 1.30898 0.86463 0.78652 0.77308 0.85422 1.21334 1.21843 1.20196 1.20124 0.96672 0.89867 0.88877 1.20712 0.92245 1.00665 0.93028 1.19331 0.96559 0.93928 0.97483 1.20893 0.95689 0.99978 0.99906 1.20699 0.99214 0.95000 0.96931 1.20714 0.95444 0.99295 1.00096 1.18013 0.95747 0.94057 0.97534 1.20874 0.95258 0.99301 0.97851 1.20658 0.97812 0.95167 1.00748 1.20679 0.99973 0.95847 0.99115 1.21137 0.93843 0.99913 0.95932 1.17972 0.95537 0.93454 0.96825 0.93121 0.94146 0.93625 0.92486 0.94167 0.95546 0.88617 0.93566 0.93739 0.92386 0.89006 0.93974 0.91869 0.87083 0.86803 0.86613 0.87000 0.86879 0.85627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.40 9.91 37.15 0.37 -2.03 16 2 C -0.14 -2.73 6.26 -26.73 -0.17 -2.90 16 3 C 0.14 3.23 5.24 -4.04 -0.02 3.21 16 4 N -0.57 -13.27 2.43 -174.61 -0.42 -13.69 16 5 C -0.25 -6.35 7.24 -15.06 -0.11 -6.46 16 6 H 0.06 1.61 7.88 -52.48 -0.41 1.19 16 7 C 0.01 0.31 4.92 -17.43 -0.09 0.22 16 8 N -0.88 -24.54 11.39 55.49 0.63 -23.91 16 9 Si 0.89 20.88 29.61 -169.99 -5.03 15.85 16 10 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 12 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 13 C 0.17 3.49 5.03 -5.19 -0.03 3.47 16 14 C -0.06 -1.30 5.47 -104.53 -0.57 -1.87 16 15 C -0.07 -1.43 5.84 -104.97 -0.61 -2.05 16 16 C -0.11 -2.03 8.57 36.01 0.31 -1.72 16 17 C -0.10 -1.82 9.56 -39.93 -0.38 -2.20 16 18 C -0.14 -2.39 9.77 -39.49 -0.39 -2.78 16 19 C -0.05 -0.99 5.74 -106.83 -0.61 -1.61 16 20 C -0.11 -1.82 9.77 -39.49 -0.39 -2.21 16 21 C -0.13 -1.88 9.95 -39.93 -0.40 -2.27 16 22 C -0.14 -2.17 9.95 -39.93 -0.40 -2.56 16 23 C -0.09 -1.63 8.08 -39.48 -0.32 -1.95 16 24 C -0.04 -0.74 5.74 -106.83 -0.61 -1.36 16 25 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 26 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.04 0.71 8.14 -51.92 -0.42 0.29 16 28 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 29 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.03 0.59 5.89 -51.93 -0.31 0.29 16 31 H 0.10 2.51 5.39 -51.93 -0.28 2.23 16 32 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 33 H 0.04 0.84 6.13 -51.93 -0.32 0.52 16 34 H 0.06 1.15 6.03 -51.93 -0.31 0.84 16 35 H 0.09 1.99 6.78 -51.93 -0.35 1.64 16 36 H 0.04 0.66 8.03 -51.93 -0.42 0.25 16 37 H 0.06 1.14 6.16 -51.93 -0.32 0.82 16 38 H 0.11 1.74 8.05 -52.48 -0.42 1.31 16 39 H 0.11 1.65 8.06 -52.49 -0.42 1.22 16 40 H 0.12 1.52 8.06 -52.49 -0.42 1.10 16 41 H 0.11 1.33 8.06 -52.49 -0.42 0.91 16 42 H 0.11 1.48 8.06 -52.48 -0.42 1.05 16 43 H 0.13 2.21 5.45 -52.49 -0.29 1.92 16 LS Contribution 338.85 15.07 5.11 5.11 Total: -1.00 -28.19 338.85 -10.50 -38.69 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: -6.37 Total: 5.01 kcal Atomic # 6 Polarization: -22.64 SS G_CDS: -4.41 Total: -27.05 kcal Atomic # 7 Polarization: -37.81 SS G_CDS: 0.21 Total: -37.60 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.03 Total: 15.85 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -28.19 -10.50 -38.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000483394621.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.334 kcal (2) G-P(sol) polarization free energy of solvation -28.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.688 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 8.98 seconds