Wall clock time and date at job start Tue Mar 31 2020 06:19:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47279 * 2 1 4 4 N 1.46500 * 109.47090 * 180.02562 * 3 2 1 5 5 C 1.36932 * 120.00205 * 94.29349 * 4 3 2 6 6 H 1.08009 * 120.00119 * 215.12941 * 5 4 3 7 7 C 1.38810 * 120.00048 * 34.85114 * 5 4 3 8 8 N 1.31621 * 119.99730 * 22.21157 * 7 5 4 9 9 Si 1.86804 * 119.99990 * 202.20442 * 7 5 4 10 10 H 1.48504 * 109.46853 * 90.00446 * 9 7 5 11 11 H 1.48503 * 109.46981 * 210.00105 * 9 7 5 12 12 H 1.48494 * 109.47242 * 330.00250 * 9 7 5 13 13 C 1.46507 * 119.99885 * 274.29383 * 4 3 2 14 14 C 1.50698 * 109.46788 * 270.00067 * 13 4 3 15 15 C 1.36124 * 120.17384 * 274.36042 * 14 13 4 16 16 C 1.50700 * 119.50304 * 0.02562 * 15 14 13 17 17 C 1.39334 * 120.99457 * 179.77748 * 15 14 13 18 18 C 1.36123 * 120.98775 * 0.48115 * 17 15 14 19 19 C 1.40509 * 119.64845 * 359.77543 * 18 17 15 20 20 C 1.40546 * 121.27840 * 180.02562 * 19 18 17 21 21 C 1.36083 * 119.65427 * 179.97438 * 20 19 18 22 22 C 1.39383 * 120.98781 * 0.02562 * 21 20 19 23 23 C 1.36088 * 121.00107 * 359.95936 * 22 21 20 24 24 C 1.40497 * 120.17310 * 94.64212 * 14 13 4 25 25 H 1.09003 * 109.46931 * 59.99829 * 1 2 3 26 26 H 1.08996 * 109.47651 * 180.02562 * 1 2 3 27 27 H 1.09008 * 109.47214 * 300.00277 * 1 2 3 28 28 H 1.08999 * 109.47267 * 239.99568 * 2 1 3 29 29 H 1.09003 * 109.46931 * 120.00171 * 2 1 3 30 30 H 1.08995 * 109.47055 * 60.00303 * 3 2 1 31 31 H 1.08997 * 109.46873 * 299.99887 * 3 2 1 32 32 H 0.96999 * 119.99847 * 180.02562 * 8 7 5 33 33 H 1.08998 * 109.47089 * 30.00149 * 13 4 3 34 34 H 1.09000 * 109.47079 * 150.00003 * 13 4 3 35 35 H 1.08998 * 109.47207 * 84.44611 * 16 15 14 36 36 H 1.08998 * 109.47390 * 204.44504 * 16 15 14 37 37 H 1.09002 * 109.47399 * 324.44598 * 16 15 14 38 38 H 1.08007 * 119.50744 * 180.23950 * 17 15 14 39 39 H 1.07996 * 120.17954 * 179.80610 * 18 17 15 40 40 H 1.07997 * 120.17160 * 359.97438 * 20 19 18 41 41 H 1.07997 * 119.51223 * 180.02562 * 21 20 19 42 42 H 1.08006 * 119.50385 * 179.97438 * 22 21 20 43 43 H 1.07999 * 120.17897 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.1892 1.5314 -1.1834 6 1 5.1217 1.0010 -1.3091 7 6 3.6815 2.2985 -2.2229 8 7 2.8224 3.2631 -1.9702 9 14 4.2177 1.9619 -3.9804 10 1 3.3009 0.9690 -4.5960 11 1 4.1761 3.2245 -4.7610 12 1 5.6021 1.4247 -3.9813 13 6 4.2380 1.3472 1.2643 14 6 4.4894 2.7314 1.8045 15 6 5.5773 3.4391 1.3938 16 6 6.5264 2.8280 0.3954 17 6 5.8237 4.7219 1.8786 18 6 4.9889 5.3010 2.7845 19 6 3.8585 4.5992 3.2360 20 6 2.9736 5.1645 4.1702 21 6 1.8885 4.4555 4.5844 22 6 1.6397 3.1738 4.0963 23 6 2.4742 2.5944 3.1907 24 6 3.6054 3.2959 2.7393 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 1.8932 -0.5139 0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 2.4673 3.7990 -2.6967 33 1 3.6492 0.7779 1.9835 34 1 5.1903 0.8446 1.0954 35 1 6.1508 2.9973 -0.6137 36 1 7.5090 3.2883 0.4993 37 1 6.6060 1.7564 0.5784 38 1 6.6921 5.2633 1.5334 39 1 5.1941 6.2949 3.1540 40 1 3.1539 6.1565 4.5573 41 1 1.2098 4.8922 5.3020 42 1 0.7714 2.6323 4.4417 43 1 2.2685 1.6008 2.8210 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000483394621.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:21 Heat of formation + Delta-G solvation = 38.133944 kcal Electronic energy + Delta-G solvation = -22895.527563 eV Core-core repulsion = 19904.937317 eV Total energy + Delta-G solvation = -2990.590246 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.163 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.31867 -38.28806 -37.32838 -34.48665 -34.12387 -32.46656 -32.23255 -30.38121 -28.16066 -27.32129 -26.75190 -24.09709 -23.76967 -22.70468 -22.11771 -20.90503 -18.64534 -17.97322 -17.73454 -16.88026 -16.62251 -15.99649 -15.59654 -15.24788 -15.16281 -14.91921 -14.44527 -14.37142 -14.23906 -13.89218 -13.73197 -13.51835 -13.17396 -13.02561 -12.80900 -12.75933 -12.62007 -12.37938 -12.23885 -12.14260 -11.82279 -11.74782 -11.62317 -11.45399 -11.43218 -11.17317 -10.60530 -10.37358 -9.22852 -8.63141 -8.40355 -7.76568 -5.31460 -0.18096 0.28217 1.30527 1.44864 1.48673 1.54442 2.24732 2.53824 3.29019 3.33570 3.84396 3.86617 4.05624 4.15176 4.20012 4.27552 4.35248 4.40204 4.50989 4.52562 4.56779 4.69590 4.72519 4.78603 4.84049 4.90787 4.93889 5.02752 5.11184 5.17408 5.22602 5.30888 5.37504 5.38680 5.42564 5.52476 5.58937 5.60397 5.69673 5.72975 5.79936 5.94233 6.06594 6.15489 6.34204 6.50869 7.21412 7.90499 8.43832 9.19900 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.014628 B = 0.007351 C = 0.005621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1913.661633 B = 3807.985037 C = 4980.105443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.131 4.131 3 C 0.147 3.853 4 N -0.581 5.581 5 C -0.241 4.241 6 H 0.062 0.938 7 C -0.034 4.034 8 N -0.912 5.912 9 Si 0.943 3.057 10 H -0.289 1.289 11 H -0.301 1.301 12 H -0.267 1.267 13 C 0.175 3.825 14 C -0.089 4.089 15 C -0.091 4.091 16 C -0.099 4.099 17 C -0.120 4.120 18 C -0.129 4.129 19 C -0.080 4.080 20 C -0.116 4.116 21 C -0.125 4.125 22 C -0.128 4.128 23 C -0.117 4.117 24 C -0.061 4.061 25 H 0.039 0.961 26 H 0.065 0.935 27 H 0.056 0.944 28 H 0.038 0.962 29 H 0.053 0.947 30 H 0.024 0.976 31 H 0.060 0.940 32 H 0.246 0.754 33 H 0.056 0.944 34 H 0.058 0.942 35 H 0.058 0.942 36 H 0.069 0.931 37 H 0.062 0.938 38 H 0.134 0.866 39 H 0.147 0.853 40 H 0.147 0.853 41 H 0.150 0.850 42 H 0.142 0.858 43 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.115 0.416 11.791 11.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.170 4.170 3 C 0.021 3.979 4 N -0.300 5.300 5 C -0.372 4.372 6 H 0.079 0.921 7 C -0.232 4.232 8 N -0.557 5.557 9 Si 0.773 3.227 10 H -0.216 1.216 11 H -0.228 1.228 12 H -0.191 1.191 13 C 0.050 3.950 14 C -0.092 4.092 15 C -0.092 4.092 16 C -0.155 4.155 17 C -0.138 4.138 18 C -0.148 4.148 19 C -0.080 4.080 20 C -0.134 4.134 21 C -0.142 4.142 22 C -0.146 4.146 23 C -0.135 4.135 24 C -0.062 4.062 25 H 0.058 0.942 26 H 0.084 0.916 27 H 0.075 0.925 28 H 0.057 0.943 29 H 0.071 0.929 30 H 0.042 0.958 31 H 0.078 0.922 32 H 0.055 0.945 33 H 0.074 0.926 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.087 0.913 37 H 0.081 0.919 38 H 0.151 0.849 39 H 0.165 0.835 40 H 0.165 0.835 41 H 0.168 0.832 42 H 0.160 0.840 43 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 0.051 0.487 11.662 11.673 hybrid contribution 0.164 0.130 -1.484 1.499 sum 0.216 0.617 10.178 10.199 Atomic orbital electron populations 1.21628 0.95148 1.01609 1.01176 1.21940 0.95764 0.99119 1.00220 1.20928 0.83028 0.93697 1.00203 1.44136 1.01341 1.83876 1.00639 1.19203 1.06437 1.21362 0.90163 0.92067 1.25655 1.00620 0.95209 1.01681 1.70170 1.35202 1.19333 1.30974 0.85637 0.78620 0.76445 0.82044 1.21650 1.22780 1.19129 1.20075 0.96445 0.90575 0.87898 1.20739 0.93436 1.00418 0.94636 1.19641 0.96808 0.95024 0.97771 1.20761 0.96801 1.00273 0.97707 1.20975 1.00560 0.94656 0.97582 1.21152 0.94427 1.00336 0.98842 1.18419 0.96981 0.93941 0.98655 1.21267 0.94727 1.00625 0.96787 1.21125 0.97886 0.94575 1.00657 1.21104 0.99835 0.96321 0.97363 1.21194 0.94469 1.00179 0.97623 1.18259 0.96132 0.94602 0.97203 0.94220 0.91563 0.92477 0.94324 0.92866 0.95785 0.92166 0.94518 0.92603 0.92388 0.92343 0.91259 0.91915 0.84863 0.83531 0.83516 0.83195 0.84021 0.86146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.41 9.91 71.98 0.71 -3.70 16 2 C -0.13 -5.07 6.26 30.59 0.19 -4.88 16 3 C 0.15 6.87 5.24 86.38 0.45 7.32 16 4 N -0.58 -27.91 2.43 -706.34 -1.72 -29.62 16 5 C -0.24 -12.55 7.24 84.03 0.61 -11.94 16 6 H 0.06 3.16 7.88 -2.91 -0.02 3.14 16 7 C -0.03 -1.87 4.92 84.86 0.42 -1.45 16 8 N -0.91 -53.21 11.39 21.65 0.25 -52.96 16 9 Si 0.94 44.27 29.61 68.60 2.03 46.30 16 10 H -0.29 -13.56 7.11 99.48 0.71 -12.86 16 11 H -0.30 -14.42 7.11 99.48 0.71 -13.72 16 12 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 13 C 0.18 7.35 5.03 85.63 0.43 7.78 16 14 C -0.09 -3.75 5.47 -19.81 -0.11 -3.86 16 15 C -0.09 -3.69 5.84 -20.09 -0.12 -3.80 16 16 C -0.10 -3.77 8.57 71.24 0.61 -3.15 16 17 C -0.12 -4.25 9.56 22.04 0.21 -4.04 16 18 C -0.13 -4.28 9.77 22.33 0.22 -4.06 16 19 C -0.08 -2.84 5.74 -21.29 -0.12 -2.96 16 20 C -0.12 -3.31 9.77 22.33 0.22 -3.09 16 21 C -0.12 -3.24 9.95 22.04 0.22 -3.02 16 22 C -0.13 -3.68 9.95 22.05 0.22 -3.46 16 23 C -0.12 -4.11 8.08 22.33 0.18 -3.93 16 24 C -0.06 -2.43 5.74 -21.30 -0.12 -2.55 16 25 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 26 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 27 H 0.06 1.69 8.14 -2.38 -0.02 1.67 16 28 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 29 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 30 H 0.02 1.11 5.89 -2.39 -0.01 1.09 16 31 H 0.06 3.30 5.39 -2.39 -0.01 3.29 16 32 H 0.25 14.10 8.31 -92.71 -0.77 13.33 16 33 H 0.06 2.15 6.13 -2.39 -0.01 2.14 16 34 H 0.06 2.37 6.03 -2.39 -0.01 2.35 16 35 H 0.06 2.62 6.78 -2.39 -0.02 2.60 16 36 H 0.07 2.17 8.03 -2.39 -0.02 2.15 16 37 H 0.06 2.31 6.16 -2.39 -0.01 2.30 16 38 H 0.13 3.97 8.05 -2.91 -0.02 3.95 16 39 H 0.15 3.74 8.06 -2.91 -0.02 3.72 16 40 H 0.15 3.19 8.06 -2.91 -0.02 3.17 16 41 H 0.15 2.75 8.06 -2.91 -0.02 2.73 16 42 H 0.14 3.18 8.06 -2.91 -0.02 3.15 16 43 H 0.12 4.22 5.45 -2.91 -0.02 4.20 16 Total: -1.00 -63.12 338.85 5.77 -57.35 By element: Atomic # 1 Polarization: 22.76 SS G_CDS: 0.99 Total: 23.75 kcal Atomic # 6 Polarization: -49.04 SS G_CDS: 4.22 Total: -44.81 kcal Atomic # 7 Polarization: -81.12 SS G_CDS: -1.47 Total: -82.59 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.30 kcal Total: -63.12 5.77 -57.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000483394621.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.479 kcal (2) G-P(sol) polarization free energy of solvation -63.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.346 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds