Wall clock time and date at job start Tue Mar 31 2020 06:44:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46891 * 109.47795 * 2 1 4 4 C 1.46908 * 110.99957 * 295.15216 * 3 2 1 5 5 C 1.50699 * 109.46801 * 294.97046 * 4 3 2 6 6 H 1.08001 * 120.00323 * 355.01136 * 5 4 3 7 7 C 1.37874 * 119.99768 * 175.00927 * 5 4 3 8 8 N 1.31515 * 120.00161 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 120.00166 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47189 * 59.99674 * 9 7 5 11 11 H 1.48494 * 109.47178 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.46902 * 300.00086 * 9 7 5 13 13 C 1.46902 * 111.00128 * 59.10288 * 3 2 1 14 14 H 1.09005 * 109.47118 * 296.05074 * 13 3 2 15 15 C 1.52996 * 109.47455 * 176.04760 * 13 3 2 16 16 C 1.50699 * 109.47085 * 56.04499 * 13 3 2 17 17 C 1.36134 * 120.16829 * 25.00282 * 16 13 3 18 18 C 1.39332 * 120.98433 * 180.02562 * 17 16 13 19 19 C 1.36123 * 120.99403 * 359.97438 * 18 17 16 20 20 C 1.40506 * 119.64955 * 0.02562 * 19 18 17 21 21 C 1.40550 * 121.28668 * 179.97438 * 20 19 18 22 22 C 1.36087 * 119.65405 * 180.02562 * 21 20 19 23 23 C 1.39383 * 120.99226 * 0.02562 * 22 21 20 24 24 C 1.36087 * 120.99400 * 359.95707 * 23 22 21 25 25 C 1.40502 * 120.17749 * 205.02539 * 16 13 3 26 26 H 1.08994 * 109.47673 * 182.00289 * 1 2 3 27 27 H 1.09003 * 109.46771 * 302.00556 * 1 2 3 28 28 H 1.09000 * 109.46717 * 62.00195 * 1 2 3 29 29 H 1.09008 * 109.46864 * 239.99797 * 2 1 3 30 30 H 1.09001 * 109.47054 * 120.00391 * 2 1 3 31 31 H 1.09001 * 109.47030 * 54.97281 * 4 3 2 32 32 H 1.09002 * 109.46908 * 174.97170 * 4 3 2 33 33 H 0.97001 * 120.00258 * 179.97438 * 8 7 5 34 34 H 1.09003 * 109.46929 * 60.00260 * 15 13 3 35 35 H 1.09004 * 109.46933 * 180.02562 * 15 13 3 36 36 H 1.08997 * 109.47178 * 299.99923 * 15 13 3 37 37 H 1.07994 * 119.50604 * 0.04562 * 17 16 13 38 38 H 1.08005 * 119.50304 * 179.97438 * 18 17 16 39 39 H 1.08000 * 120.18088 * 179.72614 * 19 18 17 40 40 H 1.08008 * 120.17568 * 359.97438 * 21 20 19 41 41 H 1.08003 * 119.50260 * 179.97438 * 22 21 20 42 42 H 1.08000 * 119.50139 * 179.97438 * 23 22 21 43 43 H 1.07995 * 120.17383 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0198 1.3848 0.0000 4 6 1.6458 2.0755 -1.2415 5 6 2.3442 1.4255 -2.4079 6 1 3.0616 0.6366 -2.2364 7 6 2.0674 1.8378 -3.6941 8 7 1.1934 2.7981 -3.9030 9 14 2.9326 1.0316 -5.1401 10 1 2.6236 -0.4209 -5.1546 11 1 2.4632 1.6507 -6.4056 12 1 4.3992 1.2243 -5.0094 13 6 1.5314 2.1160 1.1768 14 1 0.4449 2.1915 1.1326 15 6 2.1399 3.5197 1.1940 16 6 1.9331 1.3791 2.4284 17 6 3.0169 0.5553 2.4193 18 6 3.4031 -0.1346 3.5665 19 6 2.7084 -0.0047 4.7299 20 6 1.5841 0.8366 4.7778 21 6 0.8414 0.9957 5.9604 22 6 -0.2423 1.8188 5.9693 23 6 -0.6294 2.5082 4.8214 24 6 0.0656 2.3790 3.6585 25 6 1.1908 1.5381 3.6107 26 1 -0.3634 -1.0269 0.0359 27 1 -0.3633 0.5447 0.8715 28 1 -0.3633 0.4824 -0.9074 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 0.5668 2.0112 -1.3822 32 1 1.9421 3.1226 -1.1781 33 1 0.9989 3.0885 -4.8079 34 1 1.8493 4.0527 0.2887 35 1 1.7778 4.0620 2.0674 36 1 3.2263 3.4442 1.2382 37 1 3.5860 0.4351 1.5094 38 1 4.2668 -0.7823 3.5323 39 1 3.0168 -0.5492 5.6102 40 1 1.1287 0.4669 6.8573 41 1 -0.8115 1.9389 6.8793 42 1 -1.4937 3.1548 4.8554 43 1 -0.2458 2.9198 2.7771 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000531381621.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:26 Heat of formation + Delta-G solvation = 48.671991 kcal Electronic energy + Delta-G solvation = -22450.927060 eV Core-core repulsion = 19460.793779 eV Total energy + Delta-G solvation = -2990.133282 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.163 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.51343 -37.91803 -36.00024 -33.41889 -32.34419 -30.87932 -30.09922 -29.19991 -28.02450 -26.21408 -23.68094 -23.17272 -22.85191 -22.40831 -20.78884 -18.60958 -17.31192 -16.87916 -16.27047 -15.91706 -15.11674 -14.82702 -14.44865 -14.17479 -13.93133 -13.62030 -13.34516 -13.26474 -13.00727 -12.54855 -12.21444 -12.16838 -11.81398 -11.64796 -11.54817 -11.35844 -11.11340 -11.02714 -10.82714 -10.74917 -10.71297 -10.59637 -10.10199 -9.97383 -9.73861 -9.49034 -9.15659 -8.41760 -8.40085 -7.61236 -7.17936 -6.01484 -4.01902 0.68616 1.18141 2.21225 3.16757 3.33756 3.38042 3.40794 4.27401 4.42503 4.68517 4.82415 4.96627 5.00563 5.15483 5.23491 5.28475 5.34404 5.51247 5.55052 5.63171 5.74117 5.83671 5.86378 5.97666 6.04136 6.07586 6.13824 6.22733 6.26981 6.37943 6.45264 6.45936 6.52208 6.57151 6.70926 6.73651 6.77387 6.92538 6.96265 7.01778 7.21870 7.36771 7.46128 7.82613 8.12491 8.22516 8.57694 9.05597 9.61808 11.09192 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.027707 B = 0.004378 C = 0.004113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.338319 B = 6394.187628 C = 6805.952155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.052 3.948 3 N -0.527 5.527 4 C 0.187 3.813 5 C -0.504 4.504 6 H 0.062 0.938 7 C 0.056 3.944 8 N -0.899 5.899 9 Si 0.895 3.105 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.277 1.277 13 C 0.114 3.886 14 H 0.045 0.955 15 C -0.139 4.139 16 C -0.051 4.051 17 C -0.099 4.099 18 C -0.110 4.110 19 C -0.125 4.125 20 C -0.053 4.053 21 C -0.110 4.110 22 C -0.122 4.122 23 C -0.127 4.127 24 C -0.100 4.100 25 C -0.046 4.046 26 H 0.045 0.955 27 H 0.043 0.957 28 H 0.065 0.935 29 H 0.082 0.918 30 H 0.059 0.941 31 H 0.000 1.000 32 H 0.033 0.967 33 H 0.261 0.739 34 H 0.069 0.931 35 H 0.048 0.952 36 H 0.061 0.939 37 H 0.142 0.858 38 H 0.119 0.881 39 H 0.120 0.880 40 H 0.121 0.879 41 H 0.117 0.883 42 H 0.119 0.881 43 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.982 -2.981 17.962 18.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.076 4.076 3 N -0.252 5.252 4 C 0.062 3.938 5 C -0.543 4.543 6 H 0.080 0.920 7 C -0.145 4.145 8 N -0.539 5.539 9 Si 0.723 3.277 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.202 1.202 13 C 0.005 3.995 14 H 0.063 0.937 15 C -0.197 4.197 16 C -0.051 4.051 17 C -0.117 4.117 18 C -0.128 4.128 19 C -0.143 4.143 20 C -0.053 4.053 21 C -0.128 4.128 22 C -0.140 4.140 23 C -0.145 4.145 24 C -0.118 4.118 25 C -0.046 4.046 26 H 0.064 0.936 27 H 0.062 0.938 28 H 0.084 0.916 29 H 0.100 0.900 30 H 0.077 0.923 31 H 0.018 0.982 32 H 0.051 0.949 33 H 0.070 0.930 34 H 0.088 0.912 35 H 0.067 0.933 36 H 0.080 0.920 37 H 0.160 0.840 38 H 0.137 0.863 39 H 0.138 0.862 40 H 0.139 0.861 41 H 0.135 0.865 42 H 0.137 0.863 43 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -0.548 -2.872 17.819 18.058 hybrid contribution -0.574 -0.381 -0.890 1.126 sum -1.122 -3.254 16.929 17.275 Atomic orbital electron populations 1.22350 0.99571 1.00773 1.01768 1.22146 0.92157 0.91558 1.01723 1.62371 1.58528 1.01700 1.02559 1.19834 0.94930 0.94476 0.84545 1.21105 1.23413 1.19653 0.90134 0.92009 1.24957 0.95362 0.95292 0.98895 1.69942 1.33890 1.28742 1.21318 0.86605 0.79992 0.79478 0.81591 1.20345 1.21443 1.20221 1.20481 0.96999 0.93430 0.88593 0.93703 1.21861 1.01693 0.94662 1.01461 1.19827 0.94814 0.96748 0.93722 1.20990 0.96701 0.95482 0.98576 1.20935 0.99559 0.99385 0.92953 1.20910 0.95612 0.99409 0.98349 1.18029 0.96204 0.97780 0.93305 1.20957 0.95774 0.99206 0.96904 1.20774 0.97412 0.97633 0.98205 1.20797 1.00198 1.00363 0.93118 1.21161 0.94533 0.97723 0.98356 1.17977 0.95899 0.97614 0.93143 0.93619 0.93794 0.91601 0.89985 0.92252 0.98194 0.94918 0.92951 0.91183 0.93340 0.91964 0.84046 0.86266 0.86213 0.86070 0.86476 0.86339 0.85486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.46 9.24 37.16 0.34 -3.11 16 2 C 0.05 1.01 5.12 -3.83 -0.02 0.99 16 3 N -0.53 -10.88 3.70 -229.47 -0.85 -11.73 16 4 C 0.19 4.66 4.34 -4.97 -0.02 4.64 16 5 C -0.50 -13.76 8.33 -34.44 -0.29 -14.05 16 6 H 0.06 1.67 7.26 -52.49 -0.38 1.29 16 7 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 8 N -0.90 -26.27 13.29 55.43 0.74 -25.53 16 9 Si 0.90 21.44 29.54 -169.99 -5.02 16.42 16 10 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 12 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 13 C 0.11 2.03 1.15 -68.87 -0.08 1.95 16 14 H 0.05 0.83 5.02 -51.93 -0.26 0.57 16 15 C -0.14 -2.39 8.97 37.16 0.33 -2.06 16 16 C -0.05 -0.82 4.34 -104.53 -0.45 -1.27 16 17 C -0.10 -1.54 7.27 -39.93 -0.29 -1.83 16 18 C -0.11 -1.45 9.95 -39.93 -0.40 -1.84 16 19 C -0.12 -1.56 9.77 -39.49 -0.39 -1.95 16 20 C -0.05 -0.73 5.74 -106.83 -0.61 -1.34 16 21 C -0.11 -1.28 9.77 -39.48 -0.39 -1.67 16 22 C -0.12 -1.35 9.95 -39.93 -0.40 -1.74 16 23 C -0.13 -1.51 9.95 -39.93 -0.40 -1.90 16 24 C -0.10 -1.39 9.19 -39.48 -0.36 -1.75 16 25 C -0.05 -0.70 5.74 -106.84 -0.61 -1.31 16 26 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 27 H 0.04 0.78 6.37 -51.93 -0.33 0.45 16 28 H 0.07 1.39 6.51 -51.93 -0.34 1.05 16 29 H 0.08 1.73 6.77 -51.92 -0.35 1.38 16 30 H 0.06 1.05 5.33 -51.93 -0.28 0.77 16 31 H 0.00 0.01 6.25 -51.93 -0.32 -0.32 16 32 H 0.03 0.87 5.87 -51.93 -0.30 0.56 16 33 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 34 H 0.07 1.30 6.22 -51.93 -0.32 0.98 16 35 H 0.05 0.72 8.05 -51.93 -0.42 0.30 16 36 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.14 2.34 6.76 -52.49 -0.35 1.99 16 38 H 0.12 1.28 8.06 -52.48 -0.42 0.86 16 39 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 40 H 0.12 1.09 8.06 -52.48 -0.42 0.67 16 41 H 0.12 0.98 8.06 -52.48 -0.42 0.55 16 42 H 0.12 1.14 8.06 -52.49 -0.42 0.71 16 43 H 0.13 1.74 6.48 -52.49 -0.34 1.39 16 LS Contribution 333.89 15.07 5.03 5.03 Total: -1.00 -29.17 333.89 -10.33 -39.50 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: -6.10 Total: 3.10 kcal Atomic # 6 Polarization: -22.66 SS G_CDS: -4.12 Total: -26.79 kcal Atomic # 7 Polarization: -37.15 SS G_CDS: -0.11 Total: -37.26 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -29.17 -10.33 -39.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000531381621.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.169 kcal (2) G-P(sol) polarization free energy of solvation -29.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.497 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds