Wall clock time and date at job start Tue Mar 31 2020 06:44:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46891 * 109.47795 * 2 1 4 4 C 1.46908 * 110.99957 * 295.15216 * 3 2 1 5 5 C 1.50699 * 109.46801 * 294.97046 * 4 3 2 6 6 H 1.08001 * 120.00323 * 355.01136 * 5 4 3 7 7 C 1.37874 * 119.99768 * 175.00927 * 5 4 3 8 8 N 1.31515 * 120.00161 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 120.00166 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47189 * 59.99674 * 9 7 5 11 11 H 1.48494 * 109.47178 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.46902 * 300.00086 * 9 7 5 13 13 C 1.46902 * 111.00128 * 59.10288 * 3 2 1 14 14 H 1.09005 * 109.47118 * 296.05074 * 13 3 2 15 15 C 1.52996 * 109.47455 * 176.04760 * 13 3 2 16 16 C 1.50699 * 109.47085 * 56.04499 * 13 3 2 17 17 C 1.36134 * 120.16829 * 25.00282 * 16 13 3 18 18 C 1.39332 * 120.98433 * 180.02562 * 17 16 13 19 19 C 1.36123 * 120.99403 * 359.97438 * 18 17 16 20 20 C 1.40506 * 119.64955 * 0.02562 * 19 18 17 21 21 C 1.40550 * 121.28668 * 179.97438 * 20 19 18 22 22 C 1.36087 * 119.65405 * 180.02562 * 21 20 19 23 23 C 1.39383 * 120.99226 * 0.02562 * 22 21 20 24 24 C 1.36087 * 120.99400 * 359.95707 * 23 22 21 25 25 C 1.40502 * 120.17749 * 205.02539 * 16 13 3 26 26 H 1.08994 * 109.47673 * 182.00289 * 1 2 3 27 27 H 1.09003 * 109.46771 * 302.00556 * 1 2 3 28 28 H 1.09000 * 109.46717 * 62.00195 * 1 2 3 29 29 H 1.09008 * 109.46864 * 239.99797 * 2 1 3 30 30 H 1.09001 * 109.47054 * 120.00391 * 2 1 3 31 31 H 1.09001 * 109.47030 * 54.97281 * 4 3 2 32 32 H 1.09002 * 109.46908 * 174.97170 * 4 3 2 33 33 H 0.97001 * 120.00258 * 179.97438 * 8 7 5 34 34 H 1.09003 * 109.46929 * 60.00260 * 15 13 3 35 35 H 1.09004 * 109.46933 * 180.02562 * 15 13 3 36 36 H 1.08997 * 109.47178 * 299.99923 * 15 13 3 37 37 H 1.07994 * 119.50604 * 0.04562 * 17 16 13 38 38 H 1.08005 * 119.50304 * 179.97438 * 18 17 16 39 39 H 1.08000 * 120.18088 * 179.72614 * 19 18 17 40 40 H 1.08008 * 120.17568 * 359.97438 * 21 20 19 41 41 H 1.08003 * 119.50260 * 179.97438 * 22 21 20 42 42 H 1.08000 * 119.50139 * 179.97438 * 23 22 21 43 43 H 1.07995 * 120.17383 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0198 1.3848 0.0000 4 6 1.6458 2.0755 -1.2415 5 6 2.3442 1.4255 -2.4079 6 1 3.0616 0.6366 -2.2364 7 6 2.0674 1.8378 -3.6941 8 7 1.1934 2.7981 -3.9030 9 14 2.9326 1.0316 -5.1401 10 1 2.6236 -0.4209 -5.1546 11 1 2.4632 1.6507 -6.4056 12 1 4.3992 1.2243 -5.0094 13 6 1.5314 2.1160 1.1768 14 1 0.4449 2.1915 1.1326 15 6 2.1399 3.5197 1.1940 16 6 1.9331 1.3791 2.4284 17 6 3.0169 0.5553 2.4193 18 6 3.4031 -0.1346 3.5665 19 6 2.7084 -0.0047 4.7299 20 6 1.5841 0.8366 4.7778 21 6 0.8414 0.9957 5.9604 22 6 -0.2423 1.8188 5.9693 23 6 -0.6294 2.5082 4.8214 24 6 0.0656 2.3790 3.6585 25 6 1.1908 1.5381 3.6107 26 1 -0.3634 -1.0269 0.0359 27 1 -0.3633 0.5447 0.8715 28 1 -0.3633 0.4824 -0.9074 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 0.5668 2.0112 -1.3822 32 1 1.9421 3.1226 -1.1781 33 1 0.9989 3.0885 -4.8079 34 1 1.8493 4.0527 0.2887 35 1 1.7778 4.0620 2.0674 36 1 3.2263 3.4442 1.2382 37 1 3.5860 0.4351 1.5094 38 1 4.2668 -0.7823 3.5323 39 1 3.0168 -0.5492 5.6102 40 1 1.1287 0.4669 6.8573 41 1 -0.8115 1.9389 6.8793 42 1 -1.4937 3.1548 4.8554 43 1 -0.2458 2.9198 2.7771 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000531381621.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:26 Heat of formation + Delta-G solvation = 34.336797 kcal Electronic energy + Delta-G solvation = -22451.548681 eV Core-core repulsion = 19460.793779 eV Total energy + Delta-G solvation = -2990.754902 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.163 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.60926 -39.34592 -37.08434 -35.04325 -34.07310 -32.20129 -31.11058 -30.64619 -29.41576 -28.04735 -25.13507 -24.72049 -23.93465 -23.59469 -22.20486 -20.05380 -18.45232 -18.30428 -17.86605 -17.04230 -16.68516 -16.50288 -15.98896 -15.53549 -15.11385 -14.83301 -14.66864 -14.38996 -14.20979 -14.01883 -13.75244 -13.57697 -13.36111 -13.07667 -13.00117 -12.76802 -12.65964 -12.57830 -12.44607 -12.22672 -12.05333 -11.93392 -11.78431 -11.47501 -11.28934 -11.13222 -10.61269 -10.54238 -9.42788 -8.91887 -8.64732 -8.16708 -6.25038 -0.30767 0.17869 1.19289 1.41243 1.43782 1.51414 2.18132 2.41660 3.16157 3.23158 3.28077 3.66803 3.98503 4.03824 4.10993 4.21775 4.24580 4.31415 4.32849 4.40500 4.51036 4.55920 4.59359 4.62675 4.69320 4.76941 4.89424 4.95522 4.99686 5.05421 5.13204 5.24045 5.25552 5.33086 5.39202 5.40781 5.46306 5.48370 5.61803 5.67900 5.72762 5.87369 6.01085 6.13123 6.20580 6.40072 6.70245 6.91345 7.43659 8.93773 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.027707 B = 0.004378 C = 0.004113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.338319 B = 6394.187628 C = 6805.952155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.056 3.944 3 N -0.529 5.529 4 C 0.204 3.796 5 C -0.518 4.518 6 H 0.061 0.939 7 C 0.004 3.996 8 N -0.934 5.934 9 Si 0.963 3.037 10 H -0.269 1.269 11 H -0.285 1.285 12 H -0.269 1.269 13 C 0.119 3.881 14 H 0.035 0.965 15 C -0.132 4.132 16 C -0.070 4.070 17 C -0.108 4.108 18 C -0.120 4.120 19 C -0.111 4.111 20 C -0.072 4.072 21 C -0.107 4.107 22 C -0.124 4.124 23 C -0.119 4.119 24 C -0.129 4.129 25 C -0.061 4.061 26 H 0.068 0.932 27 H 0.049 0.951 28 H 0.033 0.967 29 H 0.062 0.938 30 H 0.082 0.918 31 H -0.028 1.028 32 H 0.011 0.989 33 H 0.262 0.738 34 H 0.046 0.954 35 H 0.069 0.931 36 H 0.056 0.944 37 H 0.123 0.877 38 H 0.144 0.856 39 H 0.155 0.845 40 H 0.154 0.846 41 H 0.150 0.850 42 H 0.140 0.860 43 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.654 -4.515 20.785 21.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.072 4.072 3 N -0.253 5.253 4 C 0.078 3.922 5 C -0.556 4.556 6 H 0.079 0.921 7 C -0.194 4.194 8 N -0.575 5.575 9 Si 0.788 3.212 10 H -0.194 1.194 11 H -0.210 1.210 12 H -0.194 1.194 13 C 0.011 3.989 14 H 0.052 0.948 15 C -0.189 4.189 16 C -0.071 4.071 17 C -0.126 4.126 18 C -0.138 4.138 19 C -0.128 4.128 20 C -0.072 4.072 21 C -0.125 4.125 22 C -0.141 4.141 23 C -0.137 4.137 24 C -0.147 4.147 25 C -0.061 4.061 26 H 0.087 0.913 27 H 0.068 0.932 28 H 0.052 0.948 29 H 0.080 0.920 30 H 0.100 0.900 31 H -0.010 1.010 32 H 0.029 0.971 33 H 0.071 0.929 34 H 0.065 0.935 35 H 0.088 0.912 36 H 0.075 0.925 37 H 0.141 0.859 38 H 0.161 0.839 39 H 0.173 0.827 40 H 0.171 0.829 41 H 0.168 0.832 42 H 0.157 0.843 43 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -0.214 -4.416 20.660 21.128 hybrid contribution -0.734 0.120 -1.599 1.764 sum -0.948 -4.296 19.061 19.562 Atomic orbital electron populations 1.22226 0.98957 1.01866 1.00320 1.22117 0.92603 0.90715 1.01727 1.62258 1.58855 1.02283 1.01889 1.19452 0.92812 0.93626 0.86309 1.21417 1.23386 1.19589 0.91205 0.92131 1.25819 0.96015 0.95784 1.01773 1.70076 1.35323 1.30155 1.21946 0.85531 0.78978 0.78731 0.77947 1.19412 1.21050 1.19435 1.20411 0.96288 0.93659 0.88541 0.94767 1.21780 1.01287 0.94666 1.01216 1.19592 0.96198 0.98037 0.93263 1.20955 0.96457 0.96138 0.99085 1.21126 1.00665 0.99693 0.92338 1.21311 0.94304 0.98152 0.99081 1.18374 0.97152 0.98051 0.93601 1.21348 0.95193 0.98889 0.97060 1.21181 0.97401 0.96657 0.98906 1.21143 1.00058 0.99811 0.92662 1.21185 0.95467 0.98952 0.99146 1.18103 0.96254 0.98443 0.93314 0.91305 0.93231 0.94797 0.91991 0.90007 1.01047 0.97071 0.92888 0.93513 0.91176 0.92455 0.85904 0.83869 0.82741 0.82859 0.83184 0.84256 0.86626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.70 9.24 71.98 0.66 -6.04 16 2 C 0.06 2.25 5.12 86.30 0.44 2.69 16 3 N -0.53 -22.97 3.70 -879.91 -3.25 -26.22 16 4 C 0.20 10.82 4.34 85.55 0.37 11.19 16 5 C -0.52 -29.32 8.33 25.60 0.21 -29.11 16 6 H 0.06 3.37 7.26 -2.91 -0.02 3.35 16 7 C 0.00 0.22 5.46 84.65 0.46 0.68 16 8 N -0.93 -56.48 13.29 21.45 0.28 -56.19 16 9 Si 0.96 44.66 29.54 68.60 2.03 46.69 16 10 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 11 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 12 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 13 C 0.12 4.48 1.15 44.17 0.05 4.53 16 14 H 0.03 1.36 5.02 -2.38 -0.01 1.34 16 15 C -0.13 -4.80 8.97 71.98 0.65 -4.16 16 16 C -0.07 -2.30 4.34 -19.80 -0.09 -2.39 16 17 C -0.11 -3.33 7.27 22.04 0.16 -3.17 16 18 C -0.12 -2.90 9.95 22.04 0.22 -2.68 16 19 C -0.11 -2.39 9.77 22.33 0.22 -2.18 16 20 C -0.07 -1.78 5.74 -21.30 -0.12 -1.90 16 21 C -0.11 -2.04 9.77 22.33 0.22 -1.83 16 22 C -0.12 -2.24 9.95 22.04 0.22 -2.02 16 23 C -0.12 -2.55 9.95 22.04 0.22 -2.33 16 24 C -0.13 -3.54 9.19 22.33 0.21 -3.33 16 25 C -0.06 -1.79 5.74 -21.30 -0.12 -1.91 16 26 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 27 H 0.05 1.82 6.37 -2.39 -0.02 1.80 16 28 H 0.03 1.49 6.51 -2.39 -0.02 1.48 16 29 H 0.06 2.70 6.77 -2.38 -0.02 2.68 16 30 H 0.08 2.91 5.33 -2.39 -0.01 2.90 16 31 H -0.03 -1.63 6.25 -2.39 -0.01 -1.65 16 32 H 0.01 0.64 5.87 -2.39 -0.01 0.63 16 33 H 0.26 15.02 8.31 -92.71 -0.77 14.25 16 34 H 0.05 1.88 6.22 -2.39 -0.01 1.86 16 35 H 0.07 2.19 8.05 -2.39 -0.02 2.17 16 36 H 0.06 2.09 8.14 -2.39 -0.02 2.08 16 37 H 0.12 4.16 6.76 -2.91 -0.02 4.14 16 38 H 0.14 2.68 8.06 -2.91 -0.02 2.65 16 39 H 0.15 2.22 8.06 -2.91 -0.02 2.20 16 40 H 0.15 1.90 8.06 -2.91 -0.02 1.88 16 41 H 0.15 1.72 8.06 -2.91 -0.02 1.70 16 42 H 0.14 2.31 8.06 -2.91 -0.02 2.29 16 43 H 0.12 3.29 6.48 -2.91 -0.02 3.28 16 Total: -1.00 -65.38 333.89 4.04 -61.34 By element: Atomic # 1 Polarization: 17.32 SS G_CDS: 1.00 Total: 18.32 kcal Atomic # 6 Polarization: -47.92 SS G_CDS: 3.98 Total: -43.94 kcal Atomic # 7 Polarization: -79.44 SS G_CDS: -2.97 Total: -82.41 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.69 kcal Total: -65.38 4.04 -61.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000531381621.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.678 kcal (2) G-P(sol) polarization free energy of solvation -65.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.341 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds