Wall clock time and date at job start Tue Mar 31 2020 05:38:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34235 * 116.99646 * 2 1 4 4 O 1.20830 * 119.99682 * 359.97438 * 3 2 1 5 5 C 1.50696 * 119.99896 * 179.97438 * 3 2 1 6 6 H 1.09001 * 109.47328 * 300.00305 * 5 3 2 7 7 C 1.53002 * 109.46999 * 60.00381 * 5 3 2 8 8 C 1.52996 * 109.46891 * 179.97438 * 7 5 3 9 9 C 1.53000 * 109.47328 * 299.99597 * 8 7 5 10 10 C 1.52997 * 109.47060 * 60.00126 * 9 8 7 11 11 C 1.52997 * 109.46910 * 179.97438 * 5 3 2 12 12 H 1.09001 * 109.47375 * 300.00278 * 11 5 3 13 13 C 1.50703 * 109.47084 * 60.00236 * 11 5 3 14 14 O 1.21273 * 119.99963 * 359.97438 * 13 11 5 15 15 N 1.34779 * 119.99944 * 179.97438 * 13 11 5 16 16 C 1.46499 * 119.99872 * 179.97438 * 15 13 11 17 17 C 1.53000 * 109.46840 * 179.97438 * 16 15 13 18 18 C 1.50703 * 109.46912 * 180.02562 * 17 16 15 19 19 H 1.07995 * 120.00280 * 0.02562 * 18 17 16 20 20 C 1.37877 * 120.00001 * 180.02562 * 18 17 16 21 21 N 1.31511 * 120.00114 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 120.00163 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.46926 * 59.99478 * 22 20 18 24 24 H 1.48500 * 109.47454 * 179.97438 * 22 20 18 25 25 H 1.48496 * 109.47302 * 299.99864 * 22 20 18 26 26 H 1.08995 * 109.47709 * 60.00537 * 1 2 3 27 27 H 1.09005 * 109.46640 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47473 * 299.99858 * 1 2 3 29 29 H 1.08992 * 109.47056 * 59.99641 * 7 5 3 30 30 H 1.09004 * 109.47006 * 299.99757 * 7 5 3 31 31 H 1.09004 * 109.47368 * 179.97438 * 8 7 5 32 32 H 1.09001 * 109.47372 * 59.99964 * 8 7 5 33 33 H 1.09002 * 109.47398 * 180.02562 * 9 8 7 34 34 H 1.09001 * 109.47194 * 300.00476 * 9 8 7 35 35 H 1.08998 * 109.47533 * 59.99948 * 10 9 8 36 36 H 1.08996 * 109.47853 * 180.02562 * 10 9 8 37 37 H 0.97000 * 119.99708 * 0.02562 * 15 13 11 38 38 H 1.08992 * 109.47397 * 300.00319 * 16 15 13 39 39 H 1.09001 * 109.46813 * 60.00258 * 16 15 13 40 40 H 1.09002 * 109.47398 * 300.00326 * 17 16 15 41 41 H 1.09001 * 109.47194 * 60.00507 * 17 16 15 42 42 H 0.97002 * 120.00656 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4031 2.2094 -0.0005 5 6 3.5662 1.2750 0.0006 6 1 3.9557 0.7811 0.8908 7 6 4.1138 0.5813 -1.2484 8 6 5.6416 0.6620 -1.2481 9 6 6.0748 2.1294 -1.2485 10 6 5.5273 2.8232 0.0003 11 6 3.9999 2.7422 -0.0002 12 1 3.6105 3.2358 -0.8906 13 6 3.4605 3.4261 1.2297 14 8 2.7945 2.8016 2.0278 15 7 3.7184 4.7318 1.4425 16 6 3.1936 5.3967 2.6377 17 6 3.6285 6.8636 2.6376 18 6 3.0892 7.5475 3.8675 19 1 2.4960 6.9914 4.5783 20 6 3.3531 8.8831 4.0853 21 7 4.0758 9.5602 3.2200 22 14 2.6840 9.7310 5.6093 23 1 3.2134 9.0582 6.8227 24 1 3.1061 11.1548 5.6094 25 1 1.2010 9.6540 5.6079 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 3.7243 1.0752 -2.1385 30 1 3.8048 -0.4640 -1.2483 31 1 6.0318 0.1674 -2.1376 32 1 6.0314 0.1683 -0.3579 33 1 7.1633 2.1869 -1.2488 34 1 5.6851 2.6231 -2.1387 35 1 5.9170 2.3296 0.8906 36 1 5.8355 3.8686 -0.0001 37 1 4.2508 5.2313 0.8038 38 1 2.1052 5.3400 2.6367 39 1 3.5823 4.9029 3.5284 40 1 4.7171 6.9199 2.6389 41 1 3.2401 7.3577 1.7470 42 1 4.2618 10.4998 3.3733 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000546699449.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:46 Heat of formation + Delta-G solvation = -156.351452 kcal Electronic energy + Delta-G solvation = -22929.852197 eV Core-core repulsion = 19487.686417 eV Total energy + Delta-G solvation = -3442.165779 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.99009 -39.30278 -37.57815 -36.27967 -34.76401 -32.85499 -31.58170 -31.43491 -29.31514 -27.76951 -25.17931 -23.86834 -23.33010 -21.16613 -20.81643 -20.34339 -19.52767 -17.54132 -17.05919 -16.69298 -16.35515 -16.04027 -15.19903 -14.97638 -14.55573 -14.38007 -14.19152 -14.11696 -13.80807 -13.31455 -12.95640 -12.65903 -12.60513 -12.40660 -12.24203 -12.06497 -11.55627 -11.45814 -11.16768 -11.06688 -10.97794 -10.83908 -10.74093 -10.64060 -10.52793 -10.26756 -10.12189 -9.70739 -9.37983 -9.08086 -8.47730 -8.27533 -6.06427 -4.09009 2.39628 2.72481 3.15046 3.33158 3.36581 3.39912 3.70381 4.28132 4.43128 4.49226 4.56167 4.85849 4.93818 5.03481 5.07331 5.10881 5.15097 5.16877 5.18607 5.30449 5.30644 5.46839 5.60647 5.63040 5.80075 5.80448 5.84464 5.89419 6.00686 6.15755 6.41156 6.43139 6.47269 6.80743 7.02564 7.55772 7.66538 7.89159 7.92161 8.11032 8.32125 8.77036 8.96872 9.55475 11.05200 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.021628 B = 0.003711 C = 0.003262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1294.316275 B = 7544.335424 C = 8581.714408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.364 6.364 3 C 0.471 3.529 4 O -0.491 6.491 5 C -0.057 4.057 6 H 0.114 0.886 7 C -0.111 4.111 8 C -0.119 4.119 9 C -0.121 4.121 10 C -0.112 4.112 11 C -0.095 4.095 12 H 0.103 0.897 13 C 0.519 3.481 14 O -0.548 6.548 15 N -0.721 5.721 16 C 0.124 3.876 17 C 0.013 3.987 18 C -0.521 4.521 19 H 0.058 0.942 20 C 0.059 3.941 21 N -0.895 5.895 22 Si 0.897 3.103 23 H -0.276 1.276 24 H -0.287 1.287 25 H -0.276 1.276 26 H 0.059 0.941 27 H 0.097 0.903 28 H 0.063 0.937 29 H 0.069 0.931 30 H 0.079 0.921 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.066 0.934 35 H 0.072 0.928 36 H 0.078 0.922 37 H 0.396 0.604 38 H 0.054 0.946 39 H 0.054 0.946 40 H 0.022 0.978 41 H 0.022 0.978 42 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.604 -19.769 -12.435 23.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.281 6.281 3 C 0.313 3.687 4 O -0.376 6.376 5 C -0.076 4.076 6 H 0.132 0.868 7 C -0.149 4.149 8 C -0.156 4.156 9 C -0.158 4.158 10 C -0.150 4.150 11 C -0.117 4.117 12 H 0.121 0.879 13 C 0.304 3.696 14 O -0.427 6.427 15 N -0.370 5.370 16 C 0.001 3.999 17 C -0.024 4.024 18 C -0.560 4.560 19 H 0.076 0.924 20 C -0.142 4.142 21 N -0.534 5.534 22 Si 0.724 3.276 23 H -0.201 1.201 24 H -0.212 1.212 25 H -0.201 1.201 26 H 0.078 0.922 27 H 0.116 0.884 28 H 0.082 0.918 29 H 0.087 0.913 30 H 0.098 0.902 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.088 0.912 34 H 0.085 0.915 35 H 0.091 0.909 36 H 0.096 0.904 37 H 0.229 0.771 38 H 0.073 0.927 39 H 0.072 0.928 40 H 0.040 0.960 41 H 0.040 0.960 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.946 -19.706 -11.870 23.087 hybrid contribution -0.420 0.974 0.578 1.209 sum 1.526 -18.732 -11.292 21.925 Atomic orbital electron populations 1.23198 0.76724 1.03179 1.02597 1.86450 1.23134 1.33791 1.84708 1.23438 0.91690 0.81321 0.72279 1.90689 1.66850 1.36170 1.43872 1.20819 0.87659 0.97061 1.02084 0.86820 1.21565 0.96335 1.01077 0.95892 1.21561 0.94587 0.96961 1.02539 1.21583 1.00857 0.95445 0.97949 1.21557 0.91972 1.02182 0.99246 1.21265 0.97277 0.94146 0.98968 0.87942 1.20194 0.80060 0.82610 0.86752 1.90636 1.39484 1.65098 1.47450 1.46226 1.54391 1.09919 1.26509 1.21677 0.98072 0.95230 0.84894 1.19314 0.97143 0.87950 0.98010 1.21027 1.33203 0.94994 1.06777 0.92363 1.24987 0.95078 0.97403 0.96771 1.69944 1.38525 1.09172 1.35734 0.86577 0.79471 0.78322 0.83199 1.20125 1.21232 1.20122 0.92198 0.88447 0.91827 0.91271 0.90236 0.91265 0.91376 0.91188 0.91488 0.90916 0.90354 0.77081 0.92726 0.92759 0.95979 0.95981 0.92823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.39 10.56 101.05 1.07 1.46 16 2 O -0.36 -4.73 10.47 -39.27 -0.41 -5.14 16 3 C 0.47 7.04 6.25 36.00 0.22 7.27 16 4 O -0.49 -9.11 13.91 -25.91 -0.36 -9.47 16 5 C -0.06 -0.68 1.81 -91.77 -0.17 -0.85 16 6 H 0.11 1.37 8.10 -51.93 -0.42 0.95 16 7 C -0.11 -0.93 5.14 -26.73 -0.14 -1.07 16 8 C -0.12 -0.82 5.92 -26.73 -0.16 -0.97 16 9 C -0.12 -0.89 5.92 -26.73 -0.16 -1.05 16 10 C -0.11 -1.10 5.10 -26.76 -0.14 -1.24 16 11 C -0.10 -1.22 1.70 -91.80 -0.16 -1.37 16 12 H 0.10 1.27 8.10 -51.93 -0.42 0.85 16 13 C 0.52 9.29 6.15 -10.98 -0.07 9.22 16 14 O -0.55 -11.87 14.16 -15.89 -0.23 -12.09 16 15 N -0.72 -13.32 5.45 -60.30 -0.33 -13.64 16 16 C 0.12 2.77 5.61 -4.04 -0.02 2.75 16 17 C 0.01 0.34 5.09 -27.88 -0.14 0.20 16 18 C -0.52 -14.83 9.11 -34.44 -0.31 -15.15 16 19 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 20 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 21 N -0.89 -26.50 13.29 55.43 0.74 -25.76 16 22 Si 0.90 21.75 29.54 -169.99 -5.02 16.73 16 23 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 24 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 25 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 26 H 0.06 0.60 8.13 -51.93 -0.42 0.18 16 27 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.06 0.75 8.13 -51.93 -0.42 0.33 16 29 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.08 0.60 8.11 -51.93 -0.42 0.18 16 31 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.08 0.76 7.56 -51.93 -0.39 0.36 16 37 H 0.40 6.31 7.89 -40.82 -0.32 5.99 16 38 H 0.05 1.31 8.14 -51.93 -0.42 0.89 16 39 H 0.05 1.25 8.14 -51.93 -0.42 0.83 16 40 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 41 H 0.02 0.59 8.14 -51.93 -0.42 0.16 16 42 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 343.58 15.07 5.18 5.18 Total: -1.00 -34.63 343.58 -7.71 -42.34 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: -7.01 Total: 1.08 kcal Atomic # 6 Polarization: 1.06 SS G_CDS: -0.26 Total: 0.79 kcal Atomic # 7 Polarization: -39.82 SS G_CDS: 0.41 Total: -39.41 kcal Atomic # 8 Polarization: -25.71 SS G_CDS: -1.00 Total: -26.71 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -34.63 -7.71 -42.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000546699449.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.009 kcal (2) G-P(sol) polarization free energy of solvation -34.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds