Wall clock time and date at job start Tue Mar 31 2020 05:35:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34231 * 117.00068 * 2 1 4 4 O 1.20826 * 119.99611 * 359.97438 * 3 2 1 5 5 C 1.50700 * 119.99845 * 179.97438 * 3 2 1 6 6 C 1.53001 * 109.46708 * 179.97438 * 5 3 2 7 7 C 1.52997 * 109.46922 * 179.97438 * 6 5 3 8 8 C 1.50700 * 109.47382 * 179.97438 * 7 6 5 9 9 O 1.21283 * 119.99658 * 0.02562 * 8 7 6 10 10 N 1.34773 * 120.00452 * 179.97438 * 8 7 6 11 11 C 1.46926 * 120.63302 * 180.02562 * 10 8 7 12 12 C 1.53191 * 108.89109 * 233.67613 * 11 10 8 13 13 C 1.53035 * 109.31327 * 305.29292 * 12 11 10 14 14 C 1.50709 * 109.45964 * 181.37529 * 13 12 11 15 15 H 1.07997 * 119.99916 * 359.97438 * 14 13 12 16 16 C 1.37872 * 119.99864 * 179.97438 * 14 13 12 17 17 N 1.31515 * 120.00107 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 119.99894 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.47204 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.47178 * 120.00317 * 18 16 14 21 21 H 1.48507 * 109.47028 * 240.00067 * 18 16 14 22 22 C 1.53038 * 109.54175 * 61.36680 * 13 12 11 23 23 C 1.47207 * 120.81153 * 0.14103 * 10 8 7 24 24 H 1.08998 * 109.47701 * 300.00154 * 1 2 3 25 25 H 1.08999 * 109.46952 * 60.01104 * 1 2 3 26 26 H 1.09009 * 109.47075 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47509 * 59.99485 * 5 3 2 28 28 H 1.08996 * 109.46681 * 299.99461 * 5 3 2 29 29 H 1.08998 * 109.47498 * 59.99548 * 6 5 3 30 30 H 1.09004 * 109.46843 * 299.99183 * 6 5 3 31 31 H 1.08998 * 109.47350 * 59.99522 * 7 6 5 32 32 H 1.09003 * 109.47457 * 299.99533 * 7 6 5 33 33 H 1.09002 * 109.58861 * 113.81616 * 11 10 8 34 34 H 1.08996 * 109.58519 * 353.53507 * 11 10 8 35 35 H 1.09003 * 109.49975 * 65.24379 * 12 11 10 36 36 H 1.09000 * 109.49553 * 185.30642 * 12 11 10 37 37 H 1.09004 * 109.45942 * 301.34050 * 13 12 11 38 38 H 0.97004 * 120.00396 * 180.02562 * 17 16 14 39 39 H 1.09002 * 109.49557 * 58.58503 * 22 13 12 40 40 H 1.08996 * 109.50003 * 178.68400 * 22 13 12 41 41 H 1.08996 * 109.53610 * 6.53712 * 23 10 8 42 42 H 1.09002 * 109.68003 * 246.23180 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 6 4.0001 2.7421 -0.0002 7 6 5.5280 2.8221 0.0011 8 6 5.9553 4.2673 -0.0003 9 8 5.1200 5.1466 -0.0017 10 7 7.2657 4.5826 0.0009 11 6 7.6977 5.9869 0.0002 12 6 8.6656 6.2074 -1.1666 13 6 9.8133 5.1998 -1.0696 14 6 10.7853 5.4357 -2.1969 15 1 10.6025 6.2249 -2.9111 16 6 11.9078 4.6442 -2.3163 17 7 12.1306 3.6835 -1.4462 18 14 13.1122 4.9362 -3.7140 19 1 12.6366 6.0685 -4.5488 20 1 14.4493 5.2609 -3.1555 21 1 13.2084 3.7115 -4.5485 22 6 9.2557 3.7779 -1.1667 23 6 8.2945 3.5298 0.0006 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5137 -0.8901 26 1 -0.3634 -1.0278 0.0005 27 1 3.9565 0.7805 -0.8891 28 1 3.9556 0.7810 0.8909 29 1 3.6100 3.2368 0.8892 30 1 3.6108 3.2355 -0.8908 31 1 5.9185 2.3273 -0.8881 32 1 5.9170 2.3288 0.8918 33 1 8.2004 6.2151 0.9401 34 1 6.8301 6.6360 -0.1171 35 1 8.1369 6.0669 -2.1094 36 1 9.0653 7.2204 -1.1212 37 1 10.3262 5.3244 -0.1159 38 1 12.9205 3.1267 -1.5300 39 1 8.7215 3.6603 -2.1095 40 1 10.0760 3.0615 -1.1210 41 1 7.8195 2.5560 -0.1177 42 1 8.8463 3.5554 0.9403 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000547311237.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:10 Heat of formation + Delta-G solvation = -144.526492 kcal Electronic energy + Delta-G solvation = -22230.009464 eV Core-core repulsion = 18788.356454 eV Total energy + Delta-G solvation = -3441.653011 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 2.84 seconds Orbital eigenvalues (eV) -40.67480 -39.68033 -37.03328 -36.70777 -34.44457 -33.51116 -31.40120 -30.21089 -29.33283 -27.52601 -26.09338 -23.62269 -22.64275 -22.01426 -20.71124 -19.75672 -18.35064 -17.67556 -17.06810 -16.94557 -16.54700 -16.07256 -15.65937 -15.25013 -14.57112 -14.41477 -13.84399 -13.43624 -13.36260 -13.13348 -12.81854 -12.69868 -12.45193 -12.39541 -12.22045 -11.89615 -11.64321 -11.39935 -11.29441 -11.08470 -10.98174 -10.85683 -10.69140 -10.62771 -10.39474 -10.13190 -9.68734 -9.38396 -9.18586 -8.93860 -8.40984 -8.00489 -6.06227 -4.12057 2.00738 2.46104 3.00107 3.25180 3.33919 3.38192 3.49279 4.38694 4.46393 4.64859 4.79516 4.81322 4.89862 4.95860 5.17531 5.23167 5.28664 5.31831 5.35537 5.49535 5.68363 5.81461 5.95126 6.00712 6.07907 6.12677 6.15986 6.25514 6.29335 6.44945 6.64614 6.88555 7.01943 7.12657 7.25072 7.53466 7.64000 7.89037 7.93485 8.01173 8.37538 8.57858 8.91686 9.53280 10.99352 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.029912 B = 0.002930 C = 0.002778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.845170 B = 9552.485287 C =10076.048302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.363 6.363 3 C 0.459 3.541 4 O -0.503 6.503 5 C -0.114 4.114 6 C -0.093 4.093 7 C -0.139 4.139 8 C 0.510 3.490 9 O -0.558 6.558 10 N -0.602 5.602 11 C 0.111 3.889 12 C -0.123 4.123 13 C 0.047 3.953 14 C -0.510 4.510 15 H 0.055 0.945 16 C 0.061 3.939 17 N -0.892 5.892 18 Si 0.890 3.110 19 H -0.274 1.274 20 H -0.284 1.284 21 H -0.284 1.284 22 C -0.125 4.125 23 C 0.103 3.897 24 H 0.062 0.938 25 H 0.062 0.938 26 H 0.100 0.900 27 H 0.108 0.892 28 H 0.107 0.893 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.096 0.904 32 H 0.093 0.907 33 H 0.059 0.941 34 H 0.077 0.923 35 H 0.051 0.949 36 H 0.060 0.940 37 H 0.027 0.973 38 H 0.260 0.740 39 H 0.039 0.961 40 H 0.105 0.895 41 H 0.068 0.932 42 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.338 -9.184 4.546 18.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.280 6.280 3 C 0.301 3.699 4 O -0.390 6.390 5 C -0.152 4.152 6 C -0.131 4.131 7 C -0.179 4.179 8 C 0.298 3.702 9 O -0.437 6.437 10 N -0.334 5.334 11 C -0.011 4.011 12 C -0.161 4.161 13 C 0.029 3.971 14 C -0.549 4.549 15 H 0.073 0.927 16 C -0.140 4.140 17 N -0.532 5.532 18 Si 0.718 3.282 19 H -0.198 1.198 20 H -0.211 1.211 21 H -0.211 1.211 22 C -0.163 4.163 23 C -0.019 4.019 24 H 0.081 0.919 25 H 0.081 0.919 26 H 0.118 0.882 27 H 0.126 0.874 28 H 0.126 0.874 29 H 0.097 0.903 30 H 0.098 0.902 31 H 0.114 0.886 32 H 0.112 0.888 33 H 0.077 0.923 34 H 0.096 0.904 35 H 0.070 0.930 36 H 0.078 0.922 37 H 0.045 0.955 38 H 0.070 0.930 39 H 0.058 0.942 40 H 0.123 0.877 41 H 0.086 0.914 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -15.862 -8.555 4.585 18.596 hybrid contribution 0.667 0.022 -0.786 1.032 sum -15.195 -8.534 3.798 17.836 Atomic orbital electron populations 1.23250 0.76471 1.03576 1.02590 1.86513 1.23401 1.33794 1.84324 1.23923 0.92424 0.81208 0.72304 1.90706 1.67251 1.36300 1.44696 1.21468 0.87110 1.00486 1.06086 1.21167 0.93838 0.92828 1.05284 1.21651 0.96675 0.95001 1.04586 1.20486 0.82206 0.91143 0.76378 1.90661 1.51214 1.50394 1.51458 1.48332 1.05376 1.08252 1.71480 1.21675 0.98557 0.81499 0.99394 1.22003 0.97159 1.00729 0.96245 1.18646 0.91126 0.89778 0.97557 1.21252 1.05880 1.16034 1.11695 0.92652 1.24958 0.97751 0.95186 0.96111 1.69841 1.27579 1.19979 1.35754 0.86563 0.81108 0.78113 0.82384 1.19841 1.21052 1.21050 1.22028 0.97477 1.02957 0.93835 1.22104 0.89670 0.88846 1.01292 0.91932 0.91901 0.88171 0.87360 0.87440 0.90304 0.90218 0.88569 0.88827 0.92310 0.90414 0.92990 0.92179 0.95452 0.93035 0.94230 0.87727 0.91381 0.91905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.56 101.05 1.07 1.32 16 2 O -0.36 -3.51 10.57 -39.26 -0.41 -3.92 16 3 C 0.46 5.06 7.96 36.01 0.29 5.35 16 4 O -0.50 -7.28 15.73 -18.75 -0.29 -7.57 16 5 C -0.11 -0.97 5.81 -27.88 -0.16 -1.14 16 6 C -0.09 -1.10 3.79 -26.73 -0.10 -1.20 16 7 C -0.14 -1.65 4.05 -27.88 -0.11 -1.76 16 8 C 0.51 8.57 7.70 -10.99 -0.08 8.48 16 9 O -0.56 -11.23 15.39 5.55 0.09 -11.14 16 10 N -0.60 -10.52 2.98 -172.52 -0.51 -11.03 16 11 C 0.11 2.03 6.42 -3.71 -0.02 2.01 16 12 C -0.12 -2.51 5.30 -26.61 -0.14 -2.65 16 13 C 0.05 1.11 2.06 -91.73 -0.19 0.92 16 14 C -0.51 -13.43 8.56 -34.44 -0.29 -13.72 16 15 H 0.06 1.47 7.74 -52.49 -0.41 1.06 16 16 C 0.06 1.61 5.30 -17.82 -0.09 1.51 16 17 N -0.89 -24.01 11.31 55.43 0.63 -23.38 16 18 Si 0.89 20.61 29.54 -169.99 -5.02 15.59 16 19 H -0.27 -6.33 7.11 56.52 0.40 -5.92 16 20 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 21 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 22 C -0.12 -2.64 5.16 -26.59 -0.14 -2.78 16 23 C 0.10 1.73 6.35 -3.54 -0.02 1.71 16 24 H 0.06 0.45 8.13 -51.93 -0.42 0.02 16 25 H 0.06 0.46 8.13 -51.93 -0.42 0.03 16 26 H 0.10 0.43 8.14 -51.92 -0.42 0.00 16 27 H 0.11 0.73 8.14 -51.93 -0.42 0.30 16 28 H 0.11 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.08 1.05 8.06 -51.93 -0.42 0.63 16 30 H 0.08 1.10 8.06 -51.93 -0.42 0.68 16 31 H 0.10 1.01 7.70 -51.93 -0.40 0.61 16 32 H 0.09 0.90 7.95 -51.93 -0.41 0.48 16 33 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.08 1.44 7.00 -51.93 -0.36 1.07 16 35 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 37 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.26 6.69 8.31 -40.82 -0.34 6.35 16 39 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.10 2.47 6.03 -51.93 -0.31 2.16 16 41 H 0.07 0.93 5.97 -51.93 -0.31 0.62 16 42 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 342.24 15.07 5.16 5.16 Total: -1.00 -31.63 342.24 -7.21 -38.85 By element: Atomic # 1 Polarization: 6.24 SS G_CDS: -6.83 Total: -0.59 kcal Atomic # 6 Polarization: -1.94 SS G_CDS: -0.01 Total: -1.96 kcal Atomic # 7 Polarization: -34.52 SS G_CDS: 0.11 Total: -34.41 kcal Atomic # 8 Polarization: -22.01 SS G_CDS: -0.62 Total: -22.64 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -31.63 -7.21 -38.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000547311237.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.680 kcal (2) G-P(sol) polarization free energy of solvation -31.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.84 seconds