Wall clock time and date at job start Tue Mar 31 2020 05:35:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34231 * 117.00068 * 2 1 4 4 O 1.20826 * 119.99611 * 359.97438 * 3 2 1 5 5 C 1.50700 * 119.99845 * 179.97438 * 3 2 1 6 6 C 1.53001 * 109.46708 * 179.97438 * 5 3 2 7 7 C 1.52997 * 109.46922 * 179.97438 * 6 5 3 8 8 C 1.50700 * 109.47382 * 179.97438 * 7 6 5 9 9 O 1.21283 * 119.99658 * 0.02562 * 8 7 6 10 10 N 1.34773 * 120.00452 * 179.97438 * 8 7 6 11 11 C 1.46926 * 120.63302 * 180.02562 * 10 8 7 12 12 C 1.53191 * 108.89109 * 233.67613 * 11 10 8 13 13 C 1.53035 * 109.31327 * 305.29292 * 12 11 10 14 14 C 1.50709 * 109.45964 * 181.37529 * 13 12 11 15 15 H 1.07997 * 119.99916 * 359.97438 * 14 13 12 16 16 C 1.37872 * 119.99864 * 179.97438 * 14 13 12 17 17 N 1.31515 * 120.00107 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 119.99894 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.47204 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.47178 * 120.00317 * 18 16 14 21 21 H 1.48507 * 109.47028 * 240.00067 * 18 16 14 22 22 C 1.53038 * 109.54175 * 61.36680 * 13 12 11 23 23 C 1.47207 * 120.81153 * 0.14103 * 10 8 7 24 24 H 1.08998 * 109.47701 * 300.00154 * 1 2 3 25 25 H 1.08999 * 109.46952 * 60.01104 * 1 2 3 26 26 H 1.09009 * 109.47075 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47509 * 59.99485 * 5 3 2 28 28 H 1.08996 * 109.46681 * 299.99461 * 5 3 2 29 29 H 1.08998 * 109.47498 * 59.99548 * 6 5 3 30 30 H 1.09004 * 109.46843 * 299.99183 * 6 5 3 31 31 H 1.08998 * 109.47350 * 59.99522 * 7 6 5 32 32 H 1.09003 * 109.47457 * 299.99533 * 7 6 5 33 33 H 1.09002 * 109.58861 * 113.81616 * 11 10 8 34 34 H 1.08996 * 109.58519 * 353.53507 * 11 10 8 35 35 H 1.09003 * 109.49975 * 65.24379 * 12 11 10 36 36 H 1.09000 * 109.49553 * 185.30642 * 12 11 10 37 37 H 1.09004 * 109.45942 * 301.34050 * 13 12 11 38 38 H 0.97004 * 120.00396 * 180.02562 * 17 16 14 39 39 H 1.09002 * 109.49557 * 58.58503 * 22 13 12 40 40 H 1.08996 * 109.50003 * 178.68400 * 22 13 12 41 41 H 1.08996 * 109.53610 * 6.53712 * 23 10 8 42 42 H 1.09002 * 109.68003 * 246.23180 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 6 4.0001 2.7421 -0.0002 7 6 5.5280 2.8221 0.0011 8 6 5.9553 4.2673 -0.0003 9 8 5.1200 5.1466 -0.0017 10 7 7.2657 4.5826 0.0009 11 6 7.6977 5.9869 0.0002 12 6 8.6656 6.2074 -1.1666 13 6 9.8133 5.1998 -1.0696 14 6 10.7853 5.4357 -2.1969 15 1 10.6025 6.2249 -2.9111 16 6 11.9078 4.6442 -2.3163 17 7 12.1306 3.6835 -1.4462 18 14 13.1122 4.9362 -3.7140 19 1 12.6366 6.0685 -4.5488 20 1 14.4493 5.2609 -3.1555 21 1 13.2084 3.7115 -4.5485 22 6 9.2557 3.7779 -1.1667 23 6 8.2945 3.5298 0.0006 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5137 -0.8901 26 1 -0.3634 -1.0278 0.0005 27 1 3.9565 0.7805 -0.8891 28 1 3.9556 0.7810 0.8909 29 1 3.6100 3.2368 0.8892 30 1 3.6108 3.2355 -0.8908 31 1 5.9185 2.3273 -0.8881 32 1 5.9170 2.3288 0.8918 33 1 8.2004 6.2151 0.9401 34 1 6.8301 6.6360 -0.1171 35 1 8.1369 6.0669 -2.1094 36 1 9.0653 7.2204 -1.1212 37 1 10.3262 5.3244 -0.1159 38 1 12.9205 3.1267 -1.5300 39 1 8.7215 3.6603 -2.1095 40 1 10.0760 3.0615 -1.1210 41 1 7.8195 2.5560 -0.1177 42 1 8.8463 3.5554 0.9403 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000547311237.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:09 Heat of formation + Delta-G solvation = -163.034232 kcal Electronic energy + Delta-G solvation = -22230.812020 eV Core-core repulsion = 18788.356454 eV Total energy + Delta-G solvation = -3442.455567 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.51728 -41.03161 -38.47014 -37.63481 -35.40818 -35.29137 -33.08511 -31.75571 -30.28632 -28.41301 -27.67193 -25.01120 -24.10535 -23.36657 -21.61406 -21.20072 -19.73127 -18.62620 -18.50282 -17.93444 -17.73096 -17.36095 -16.71751 -16.59570 -16.42030 -15.46246 -14.95107 -14.82999 -14.64722 -14.47689 -14.24857 -14.07863 -13.77612 -13.46953 -13.11988 -13.08401 -12.88072 -12.83411 -12.76216 -12.43561 -12.35386 -12.13035 -11.90134 -11.84483 -11.69379 -11.56411 -11.45189 -10.98957 -10.93451 -10.62420 -10.36986 -9.50300 -8.06866 -6.19437 1.19839 1.40712 1.44532 1.54057 1.70371 1.75754 2.20572 2.45148 3.19698 3.55816 3.75653 4.02972 4.04261 4.14189 4.30542 4.30701 4.32329 4.35849 4.51533 4.54121 4.58543 4.59657 4.66309 4.71651 4.74944 4.83082 4.90189 5.01755 5.12748 5.20451 5.28627 5.31652 5.44261 5.46365 5.59429 5.68436 6.01412 6.17486 6.41699 6.58953 6.74628 6.89641 7.25253 7.48080 8.96633 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.029912 B = 0.002930 C = 0.002778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.845170 B = 9552.485287 C =10076.048302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.363 6.363 3 C 0.457 3.543 4 O -0.548 6.548 5 C -0.105 4.105 6 C -0.087 4.087 7 C -0.131 4.131 8 C 0.503 3.497 9 O -0.597 6.597 10 N -0.606 5.606 11 C 0.116 3.884 12 C -0.113 4.113 13 C 0.044 3.956 14 C -0.534 4.534 15 H 0.044 0.956 16 C 0.020 3.980 17 N -0.909 5.909 18 Si 0.947 3.053 19 H -0.275 1.275 20 H -0.281 1.281 21 H -0.278 1.278 22 C -0.117 4.117 23 C 0.113 3.887 24 H 0.059 0.941 25 H 0.057 0.943 26 H 0.133 0.867 27 H 0.136 0.864 28 H 0.141 0.859 29 H 0.056 0.944 30 H 0.050 0.950 31 H 0.120 0.880 32 H 0.130 0.870 33 H 0.068 0.932 34 H 0.074 0.926 35 H 0.040 0.960 36 H 0.059 0.941 37 H 0.003 0.997 38 H 0.262 0.738 39 H 0.029 0.971 40 H 0.082 0.918 41 H 0.112 0.888 42 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.444 -11.447 4.799 19.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.279 6.279 3 C 0.303 3.697 4 O -0.438 6.438 5 C -0.142 4.142 6 C -0.126 4.126 7 C -0.170 4.170 8 C 0.294 3.706 9 O -0.479 6.479 10 N -0.338 5.338 11 C -0.007 4.007 12 C -0.152 4.152 13 C 0.025 3.975 14 C -0.573 4.573 15 H 0.062 0.938 16 C -0.180 4.180 17 N -0.549 5.549 18 Si 0.773 3.227 19 H -0.200 1.200 20 H -0.207 1.207 21 H -0.204 1.204 22 C -0.155 4.155 23 C -0.008 4.008 24 H 0.077 0.923 25 H 0.076 0.924 26 H 0.151 0.849 27 H 0.154 0.846 28 H 0.159 0.841 29 H 0.075 0.925 30 H 0.069 0.931 31 H 0.138 0.862 32 H 0.148 0.852 33 H 0.086 0.914 34 H 0.092 0.908 35 H 0.058 0.942 36 H 0.078 0.922 37 H 0.021 0.979 38 H 0.071 0.929 39 H 0.048 0.952 40 H 0.100 0.900 41 H 0.130 0.870 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -15.965 -10.850 4.840 19.901 hybrid contribution 0.673 0.752 -0.872 1.334 sum -15.293 -10.098 3.968 18.751 Atomic orbital electron populations 1.23511 0.75255 1.05614 1.02229 1.86507 1.24676 1.32942 1.83792 1.24466 0.93447 0.80883 0.70953 1.90697 1.68392 1.37771 1.46983 1.21496 0.85341 0.98401 1.08956 1.21022 0.93835 0.94843 1.02868 1.21719 0.96488 0.91448 1.07315 1.21423 0.81257 0.93094 0.74858 1.90650 1.52056 1.52190 1.53004 1.48411 1.06037 1.07763 1.71632 1.21517 0.97789 0.82726 0.98702 1.21847 0.96597 0.99999 0.96708 1.18631 0.91483 0.92135 0.95249 1.21562 1.07206 1.15994 1.12496 0.93810 1.25587 0.99137 0.95088 0.98140 1.69936 1.27969 1.20294 1.36704 0.85685 0.79113 0.77982 0.79908 1.20000 1.20733 1.20403 1.21802 0.97655 1.00631 0.95443 1.22034 0.88986 0.90494 0.99326 0.92266 0.92408 0.84932 0.84586 0.84123 0.92545 0.93103 0.86197 0.85249 0.91376 0.90783 0.94164 0.92235 0.97858 0.92861 0.95173 0.89974 0.87014 0.91433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 10.56 113.37 1.20 1.54 16 2 O -0.36 -6.24 10.57 -51.43 -0.54 -6.79 16 3 C 0.46 9.39 7.96 71.24 0.57 9.95 16 4 O -0.55 -15.93 15.73 21.96 0.35 -15.58 16 5 C -0.11 -1.44 5.81 29.85 0.17 -1.27 16 6 C -0.09 -1.90 3.79 30.59 0.12 -1.78 16 7 C -0.13 -2.62 4.05 29.85 0.12 -2.49 16 8 C 0.50 16.04 7.70 87.66 0.68 16.72 16 9 O -0.60 -23.95 15.39 -3.04 -0.05 -23.99 16 10 N -0.61 -20.18 2.98 -818.12 -2.44 -22.62 16 11 C 0.12 4.19 6.42 86.36 0.55 4.74 16 12 C -0.11 -4.67 5.30 30.67 0.16 -4.51 16 13 C 0.04 2.06 2.06 -11.51 -0.02 2.03 16 14 C -0.53 -28.52 8.56 25.60 0.22 -28.30 16 15 H 0.04 2.37 7.74 -2.91 -0.02 2.35 16 16 C 0.02 1.03 5.30 84.65 0.45 1.48 16 17 N -0.91 -48.88 11.31 21.45 0.24 -48.64 16 18 Si 0.95 42.25 29.54 68.60 2.03 44.28 16 19 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 20 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 21 H -0.28 -12.09 7.11 99.48 0.71 -11.39 16 22 C -0.12 -4.87 5.16 30.68 0.16 -4.71 16 23 C 0.11 3.52 6.35 86.32 0.55 4.06 16 24 H 0.06 0.80 8.13 -2.39 -0.02 0.78 16 25 H 0.06 0.80 8.13 -2.39 -0.02 0.78 16 26 H 0.13 0.78 8.14 -2.38 -0.02 0.76 16 27 H 0.14 1.19 8.14 -2.39 -0.02 1.18 16 28 H 0.14 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.06 1.47 8.06 -2.39 -0.02 1.45 16 30 H 0.05 1.39 8.06 -2.39 -0.02 1.37 16 31 H 0.12 1.93 7.70 -2.39 -0.02 1.91 16 32 H 0.13 1.76 7.95 -2.39 -0.02 1.74 16 33 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 34 H 0.07 2.75 7.00 -2.39 -0.02 2.73 16 35 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 36 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 37 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 38 H 0.26 13.39 8.31 -92.70 -0.77 12.62 16 39 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 40 H 0.08 3.84 6.03 -2.39 -0.01 3.82 16 41 H 0.11 2.51 5.97 -2.39 -0.01 2.50 16 42 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 Total: -1.00 -71.03 342.24 5.49 -65.54 By element: Atomic # 1 Polarization: 9.34 SS G_CDS: 0.99 Total: 10.33 kcal Atomic # 6 Polarization: -7.45 SS G_CDS: 4.92 Total: -2.53 kcal Atomic # 7 Polarization: -69.06 SS G_CDS: -2.20 Total: -71.26 kcal Atomic # 8 Polarization: -46.12 SS G_CDS: -0.24 Total: -46.36 kcal Atomic # 14 Polarization: 42.25 SS G_CDS: 2.03 Total: 44.28 kcal Total: -71.03 5.49 -65.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000547311237.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.493 kcal (2) G-P(sol) polarization free energy of solvation -71.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds