Wall clock time and date at job start Tue Mar 31 2020 06:01:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86794 * 120.00255 * 2 1 4 4 H 1.48497 * 109.47457 * 239.99920 * 3 2 1 5 5 H 1.48501 * 109.47172 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47133 * 119.99848 * 3 2 1 7 7 C 1.37876 * 119.99471 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99742 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00431 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.47232 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47036 * 180.02562 * 10 9 7 12 12 N 1.46497 * 109.47197 * 180.02562 * 11 10 9 13 13 C 1.34777 * 120.00358 * 179.97438 * 12 11 10 14 14 O 1.21581 * 119.99637 * 359.97438 * 13 12 11 15 15 N 1.34774 * 120.00226 * 180.02562 * 13 12 11 16 16 C 1.46494 * 119.99915 * 179.97438 * 15 13 12 17 17 C 1.53001 * 109.47106 * 179.97438 * 16 15 13 18 18 N 1.46498 * 109.47601 * 179.97438 * 17 16 15 19 19 C 1.46768 * 124.34879 * 89.99607 * 18 17 16 20 20 C 1.54480 * 105.55098 * 197.08340 * 19 18 17 21 21 C 1.54631 * 101.76472 * 334.54015 * 20 19 18 22 22 C 1.34621 * 124.47196 * 270.02849 * 18 17 16 23 23 O 1.21286 * 124.90539 * 359.55259 * 22 18 17 24 24 H 0.96998 * 119.99658 * 359.97438 * 1 2 3 25 25 H 1.09003 * 109.47181 * 60.00254 * 9 7 2 26 26 H 1.08993 * 109.47411 * 299.99991 * 9 7 2 27 27 H 1.08997 * 109.46957 * 60.00468 * 10 9 7 28 28 H 1.09000 * 109.46686 * 300.00228 * 10 9 7 29 29 H 1.08999 * 109.47323 * 59.99611 * 11 10 9 30 30 H 1.09007 * 109.47086 * 299.99769 * 11 10 9 31 31 H 0.97010 * 119.99673 * 359.97438 * 12 11 10 32 32 H 0.97004 * 120.00225 * 359.97438 * 15 13 12 33 33 H 1.08994 * 109.47473 * 59.99863 * 16 15 13 34 34 H 1.08998 * 109.47490 * 299.99356 * 16 15 13 35 35 H 1.09002 * 109.47341 * 59.99923 * 17 16 15 36 36 H 1.08998 * 109.47560 * 299.99803 * 17 16 15 37 37 H 1.09002 * 110.24468 * 78.03845 * 19 18 17 38 38 H 1.09002 * 110.24463 * 316.12602 * 19 18 17 39 39 H 1.08995 * 110.97082 * 92.66028 * 20 19 18 40 40 H 1.09001 * 110.96924 * 216.42557 * 20 19 18 41 41 H 1.09000 * 110.48694 * 143.47575 * 21 20 19 42 42 H 1.08994 * 110.49106 * 266.12244 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1942 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2452 -3.6621 0.0015 11 6 1.4801 -4.9871 0.0020 12 7 2.4320 -6.1007 0.0024 13 6 1.9828 -7.3714 0.0034 14 8 0.7874 -7.5935 0.0045 15 7 2.8585 -8.3958 0.0043 16 6 2.3701 -9.7769 0.0059 17 6 3.5601 -10.7387 0.0060 18 7 3.0718 -12.1199 0.0083 19 6 2.7945 -12.9022 -1.2021 20 6 1.9134 -14.0835 -0.7389 21 6 2.3187 -14.2153 0.7475 22 6 2.8184 -12.8366 1.1193 23 8 2.9687 -12.4348 2.2538 24 1 -0.4849 0.8401 0.0004 25 1 0.6240 -2.5575 -0.8880 26 1 0.6247 -2.5563 0.8919 27 1 2.8725 -3.6041 0.8909 28 1 2.8711 -3.6047 -0.8890 29 1 0.8530 -5.0450 -0.8877 30 1 0.8538 -5.0447 0.8923 31 1 3.3858 -5.9234 0.0019 32 1 3.8123 -8.2186 0.0038 33 1 1.7643 -9.9492 -0.8836 34 1 1.7649 -9.9473 0.8963 35 1 4.1663 -10.5666 0.8954 36 1 4.1650 -10.5684 -0.8846 37 1 3.7247 -13.2719 -1.6337 38 1 2.2574 -12.2937 -1.9297 39 1 0.8550 -13.8418 -0.8347 40 1 2.1562 -14.9913 -1.2913 41 1 1.4555 -14.4851 1.3558 42 1 3.1131 -14.9527 0.8625 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000564803573.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:07 Heat of formation + Delta-G solvation = -79.876832 kcal Electronic energy + Delta-G solvation = -21180.594596 eV Core-core repulsion = 17774.037756 eV Total energy + Delta-G solvation = -3406.556840 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.79260 -39.75543 -36.88169 -35.90212 -35.01818 -33.36945 -32.89942 -31.12326 -28.75698 -28.02085 -26.48989 -23.83254 -22.72902 -22.34990 -20.91453 -20.45441 -19.75854 -18.11998 -17.30756 -16.79543 -16.52973 -16.09228 -15.82760 -15.49773 -14.62029 -14.60360 -14.36407 -14.20487 -14.01547 -13.77618 -13.63717 -13.55164 -13.00336 -12.40921 -12.25782 -12.06879 -11.87503 -11.79691 -11.57307 -11.50466 -10.87314 -10.70625 -10.61098 -10.22573 -10.11050 -9.84067 -9.43802 -9.24686 -9.22128 -9.12030 -8.60345 -8.35563 -6.00308 -4.03470 2.13592 2.35256 3.01690 3.32884 3.37098 3.37632 3.39561 3.86618 3.97122 4.30412 4.39119 4.46750 4.50389 4.52649 4.62127 4.93900 4.99922 5.03604 5.20653 5.30621 5.35206 5.46603 5.50489 5.60213 5.73397 5.83314 6.02441 6.20088 6.38629 6.53971 6.64120 6.64706 6.80465 7.03663 7.05846 7.65137 7.75221 7.78370 7.98555 8.14033 8.39381 8.74705 9.02984 9.60432 11.10934 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.054237 B = 0.002025 C = 0.002014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 516.129558 B =13825.094506 C =13897.605483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.056 3.944 3 Si 0.894 3.106 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.523 4.523 8 H 0.055 0.945 9 C 0.024 3.976 10 C -0.120 4.120 11 C 0.135 3.865 12 N -0.741 5.741 13 C 0.701 3.299 14 O -0.592 6.592 15 N -0.750 5.750 16 C 0.125 3.875 17 C 0.117 3.883 18 N -0.619 5.619 19 C 0.100 3.900 20 C -0.133 4.133 21 C -0.155 4.155 22 C 0.515 3.485 23 O -0.526 6.526 24 H 0.262 0.738 25 H 0.019 0.981 26 H 0.019 0.981 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.394 0.606 32 H 0.395 0.605 33 H 0.067 0.933 34 H 0.068 0.932 35 H 0.089 0.911 36 H 0.086 0.914 37 H 0.074 0.926 38 H 0.082 0.918 39 H 0.084 0.916 40 H 0.092 0.908 41 H 0.103 0.897 42 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.055 -29.965 -4.177 31.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.145 4.145 3 Si 0.722 3.278 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.561 4.561 8 H 0.073 0.927 9 C -0.014 4.014 10 C -0.158 4.158 11 C 0.012 3.988 12 N -0.395 5.395 13 C 0.401 3.599 14 O -0.470 6.470 15 N -0.408 5.408 16 C -0.001 4.001 17 C -0.006 4.006 18 N -0.354 5.354 19 C -0.023 4.023 20 C -0.171 4.171 21 C -0.195 4.195 22 C 0.303 3.697 23 O -0.401 6.401 24 H 0.071 0.929 25 H 0.038 0.962 26 H 0.038 0.962 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.227 0.773 32 H 0.228 0.772 33 H 0.085 0.915 34 H 0.087 0.913 35 H 0.108 0.892 36 H 0.105 0.895 37 H 0.092 0.908 38 H 0.100 0.900 39 H 0.103 0.897 40 H 0.110 0.890 41 H 0.122 0.878 42 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 7.858 -29.750 -3.570 30.977 hybrid contribution 1.337 1.171 -0.110 1.781 sum 9.196 -28.579 -3.680 30.247 Atomic orbital electron populations 1.69961 1.06043 1.26783 1.50462 1.25038 0.94876 0.99302 0.95309 0.86631 0.79540 0.83088 0.78555 1.20272 1.21279 1.20264 1.21168 0.92944 0.90959 1.51038 0.92706 1.19027 0.93863 0.90789 0.97706 1.21891 0.99792 0.93314 1.00827 1.21521 0.91298 0.84115 1.01910 1.45375 1.10482 1.04374 1.79265 1.15961 0.85211 0.80747 0.77985 1.90925 1.14150 1.84104 1.57776 1.44902 1.09012 1.05027 1.81838 1.21439 0.96343 0.79438 1.02900 1.21464 0.95704 0.79402 1.04033 1.48185 1.66798 1.12788 1.07637 1.22148 0.99804 0.92960 0.87400 1.22614 1.00802 0.98603 0.95047 1.22330 1.03692 0.95575 0.97877 1.21084 0.76601 0.87702 0.84300 1.90765 1.52790 1.75477 1.21117 0.92876 0.96243 0.96225 0.92743 0.92767 0.91941 0.91941 0.77285 0.77151 0.91511 0.91349 0.89246 0.89520 0.90785 0.89989 0.89684 0.88968 0.87829 0.87723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.00 13.29 55.43 0.74 -26.26 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.52 -14.69 9.11 -34.44 -0.31 -15.01 16 8 H 0.05 1.48 7.74 -52.48 -0.41 1.07 16 9 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 10 C -0.12 -2.38 5.27 -26.73 -0.14 -2.52 16 11 C 0.13 2.45 5.67 -4.04 -0.02 2.43 16 12 N -0.74 -10.95 5.56 -65.23 -0.36 -11.31 16 13 C 0.70 11.05 8.57 -86.92 -0.74 10.31 16 14 O -0.59 -12.08 16.34 5.29 0.09 -11.99 16 15 N -0.75 -8.22 5.56 -65.23 -0.36 -8.58 16 16 C 0.12 1.29 6.00 -4.04 -0.02 1.27 16 17 C 0.12 0.84 6.06 -4.04 -0.02 0.82 16 18 N -0.62 -4.50 2.94 -172.35 -0.51 -5.00 16 19 C 0.10 0.39 7.34 -3.12 -0.02 0.36 16 20 C -0.13 -0.39 7.18 -25.10 -0.18 -0.57 16 21 C -0.15 -0.78 6.86 -26.74 -0.18 -0.97 16 22 C 0.52 4.87 8.03 -10.77 -0.09 4.78 16 23 O -0.53 -7.45 17.60 5.55 0.10 -7.35 16 24 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 25 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 26 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 28 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 30 H 0.06 1.22 8.14 -51.92 -0.42 0.80 16 31 H 0.39 4.55 8.49 -40.82 -0.35 4.20 16 32 H 0.40 2.96 8.49 -40.82 -0.35 2.62 16 33 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.09 0.72 7.93 -51.93 -0.41 0.31 16 36 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 37 H 0.07 0.18 8.14 -51.93 -0.42 -0.24 16 38 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 39 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 40 H 0.09 0.09 8.14 -51.93 -0.42 -0.34 16 41 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.10 0.38 8.14 -51.93 -0.42 -0.05 16 LS Contribution 355.75 15.07 5.36 5.36 Total: -1.00 -37.28 355.75 -8.94 -46.22 By element: Atomic # 1 Polarization: 6.43 SS G_CDS: -6.99 Total: -0.55 kcal Atomic # 6 Polarization: 4.88 SS G_CDS: -1.98 Total: 2.90 kcal Atomic # 7 Polarization: -50.66 SS G_CDS: -0.50 Total: -51.16 kcal Atomic # 8 Polarization: -19.53 SS G_CDS: 0.18 Total: -19.35 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -37.28 -8.94 -46.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000564803573.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.658 kcal (2) G-P(sol) polarization free energy of solvation -37.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds