Wall clock time and date at job start Tue Mar 31 2020 07:02:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81406 * 1 3 3 C 1.81404 * 102.99814 * 2 1 4 4 C 1.52998 * 112.85112 * 178.46939 * 3 2 1 5 5 N 1.46900 * 109.47081 * 317.29924 * 4 3 2 6 6 C 1.46847 * 111.00109 * 169.86788 * 5 4 3 7 7 C 1.53036 * 109.52407 * 185.83488 * 6 5 4 8 8 C 1.53115 * 109.28111 * 300.82560 * 7 6 5 9 9 C 1.52999 * 109.52370 * 177.56012 * 8 7 6 10 10 C 1.50697 * 109.47284 * 65.31498 * 9 8 7 11 11 H 1.07999 * 119.99885 * 359.97438 * 10 9 8 12 12 C 1.37872 * 120.00187 * 180.02562 * 10 9 8 13 13 N 1.31513 * 120.00352 * 180.02562 * 12 10 9 14 14 Si 1.86805 * 119.99880 * 359.97438 * 12 10 9 15 15 H 1.48507 * 109.46911 * 90.00399 * 14 12 10 16 16 H 1.48498 * 109.47035 * 210.00004 * 14 12 10 17 17 H 1.48497 * 109.47095 * 330.00396 * 14 12 10 18 18 C 1.53120 * 109.16302 * 57.65235 * 8 7 6 19 19 C 1.46848 * 111.00079 * 294.07939 * 5 4 3 20 20 C 1.53785 * 113.61052 * 47.16351 * 3 2 1 21 21 C 1.53783 * 87.07899 * 220.01704 * 20 3 2 22 22 C 1.53777 * 87.08233 * 25.43609 * 21 20 3 23 23 H 1.08995 * 109.47077 * 60.00203 * 1 2 3 24 24 H 1.08998 * 109.47172 * 299.99823 * 1 2 3 25 25 H 1.09000 * 109.46984 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.46643 * 77.29317 * 4 3 2 27 27 H 1.08994 * 109.47021 * 197.29336 * 4 3 2 28 28 H 1.08998 * 109.46100 * 305.85994 * 6 5 4 29 29 H 1.09000 * 109.45662 * 65.82531 * 6 5 4 30 30 H 1.09000 * 109.50293 * 180.87936 * 7 6 5 31 31 H 1.09006 * 109.50029 * 60.76712 * 7 6 5 32 32 H 1.09002 * 109.52023 * 297.75035 * 8 7 6 33 33 H 1.08995 * 109.47170 * 185.31654 * 9 8 7 34 34 H 1.09003 * 109.46947 * 305.31747 * 9 8 7 35 35 H 0.97001 * 120.00329 * 180.02562 * 13 12 10 36 36 H 1.08994 * 109.50342 * 182.40642 * 18 8 7 37 37 H 1.09003 * 109.50373 * 62.28347 * 18 8 7 38 38 H 1.08999 * 109.46400 * 294.18329 * 19 5 4 39 39 H 1.09010 * 109.46083 * 54.14417 * 19 5 4 40 40 H 1.08997 * 113.61823 * 334.56576 * 20 3 2 41 41 H 1.09001 * 113.61063 * 105.47278 * 20 3 2 42 42 H 1.08997 * 113.61956 * 270.88814 * 21 20 3 43 43 H 1.09004 * 113.61404 * 139.98405 * 21 20 3 44 44 H 1.09002 * 113.61926 * 220.01906 * 22 21 20 45 45 H 1.09006 * 113.61695 * 89.11375 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2221 1.7676 0.0000 4 6 3.7290 2.0295 0.0377 5 7 4.3609 1.1162 0.9992 6 6 5.8244 1.1684 0.8911 7 6 6.4428 0.1040 1.8003 8 6 6.0095 0.3606 3.2463 9 6 6.5750 -0.7356 4.1517 10 6 8.0791 -0.6444 4.1717 11 1 8.5815 0.1188 3.5959 12 6 8.8138 -1.5358 4.9242 13 7 10.1264 -1.4559 4.9421 14 14 7.9448 -2.8564 5.9195 15 1 7.7814 -4.0759 5.0879 16 1 8.7530 -3.1819 7.1221 17 1 6.6094 -2.3611 6.3397 18 6 4.4803 0.3489 3.3225 19 6 3.9189 1.4062 2.3692 20 6 1.4271 2.5832 1.0333 21 6 1.3165 3.6826 -0.0363 22 6 1.4842 2.5701 -1.0846 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 4.1515 1.8629 -0.9532 27 1 3.9111 3.0602 0.3418 28 1 6.1193 0.9803 -0.1412 29 1 6.1759 2.1544 1.1951 30 1 7.5295 0.1535 1.7317 31 1 6.1025 -0.8834 1.4882 32 1 6.3830 1.3316 3.5716 33 1 6.1896 -0.6062 5.1630 34 1 6.2753 -1.7119 3.7707 35 1 10.6434 -2.0834 5.4712 36 1 4.1649 0.5734 4.3414 37 1 4.1091 -0.6346 3.0343 38 1 4.2793 2.3911 2.6662 39 1 2.8297 1.3907 2.4104 40 1 0.4697 2.1356 1.3000 41 1 2.0148 2.8776 1.9028 42 1 2.1422 4.3938 -0.0185 43 1 0.3402 4.1666 -0.0656 44 1 2.1179 2.8538 -1.9249 45 1 0.5424 2.1189 -1.3969 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000564990301.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:01 Heat of formation + Delta-G solvation = 13.180347 kcal Electronic energy + Delta-G solvation = -21132.966429 eV Core-core repulsion = 18276.738065 eV Total energy + Delta-G solvation = -2856.228363 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.167 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.96154 -38.04721 -34.38044 -32.19113 -30.40096 -29.38481 -28.88235 -26.85280 -26.09291 -24.30538 -22.59390 -22.44954 -20.40488 -19.19855 -18.81803 -17.07810 -16.59308 -15.57361 -15.35819 -15.08363 -14.66599 -14.25203 -14.06367 -13.84334 -13.56453 -13.29362 -13.19024 -12.79819 -12.63191 -12.34657 -12.20324 -12.01312 -11.74367 -11.50497 -11.30572 -11.26537 -11.01428 -10.73639 -10.65419 -10.56387 -10.50130 -10.03896 -9.69430 -9.51241 -9.48697 -9.14178 -8.90805 -8.45783 -8.05622 -7.48706 -5.96924 -3.93371 1.70353 2.67325 3.37042 3.43918 3.48770 3.91939 4.18974 4.31993 4.46723 4.51838 4.52783 4.91166 5.03730 5.05713 5.27045 5.33345 5.35816 5.36901 5.40833 5.46376 5.53765 5.55058 5.63532 5.66205 5.68073 5.75423 5.82658 5.93495 5.99398 6.02991 6.13428 6.29508 6.43498 6.58917 6.67345 6.95066 7.03790 7.12838 7.32371 7.37194 7.45582 7.59293 7.89391 8.62813 9.08466 9.66839 11.16580 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.029969 B = 0.003873 C = 0.003682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.069539 B = 7227.449266 C = 7603.723110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 S -0.186 6.186 3 C -0.044 4.044 4 C 0.092 3.908 5 N -0.524 5.524 6 C 0.057 3.943 7 C -0.099 4.099 8 C -0.072 4.072 9 C -0.009 4.009 10 C -0.512 4.512 11 H 0.072 0.928 12 C 0.065 3.935 13 N -0.907 5.907 14 Si 0.878 3.122 15 H -0.278 1.278 16 H -0.290 1.290 17 H -0.266 1.266 18 C -0.113 4.113 19 C 0.056 3.944 20 C -0.141 4.141 21 C -0.138 4.138 22 C -0.131 4.131 23 H 0.069 0.931 24 H 0.072 0.928 25 H 0.097 0.903 26 H 0.080 0.920 27 H 0.043 0.957 28 H 0.066 0.934 29 H 0.027 0.973 30 H 0.076 0.924 31 H 0.063 0.937 32 H 0.055 0.945 33 H 0.013 0.987 34 H 0.012 0.988 35 H 0.261 0.739 36 H 0.057 0.943 37 H 0.068 0.932 38 H 0.023 0.977 39 H 0.076 0.924 40 H 0.083 0.917 41 H 0.082 0.918 42 H 0.083 0.917 43 H 0.069 0.931 44 H 0.077 0.923 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.674 9.066 -11.619 25.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.315 4.315 2 S 0.045 5.955 3 C -0.154 4.154 4 C -0.038 4.038 5 N -0.249 5.249 6 C -0.070 4.070 7 C -0.137 4.137 8 C -0.091 4.091 9 C -0.046 4.046 10 C -0.550 4.550 11 H 0.090 0.910 12 C -0.136 4.136 13 N -0.547 5.547 14 Si 0.706 3.294 15 H -0.203 1.203 16 H -0.216 1.216 17 H -0.190 1.190 18 C -0.150 4.150 19 C -0.071 4.071 20 C -0.181 4.181 21 C -0.177 4.177 22 C -0.171 4.171 23 H 0.088 0.912 24 H 0.091 0.909 25 H 0.116 0.884 26 H 0.099 0.901 27 H 0.061 0.939 28 H 0.084 0.916 29 H 0.045 0.955 30 H 0.095 0.905 31 H 0.082 0.918 32 H 0.073 0.927 33 H 0.031 0.969 34 H 0.030 0.970 35 H 0.071 0.929 36 H 0.075 0.925 37 H 0.086 0.914 38 H 0.041 0.959 39 H 0.094 0.906 40 H 0.102 0.898 41 H 0.100 0.900 42 H 0.102 0.898 43 H 0.088 0.912 44 H 0.095 0.905 45 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -19.962 7.561 -11.650 24.318 hybrid contribution -0.905 1.129 0.765 1.637 sum -20.866 8.691 -10.884 25.088 Atomic orbital electron populations 1.23619 0.97847 1.05920 1.04130 1.87325 1.02557 1.08639 1.96994 1.24206 0.98233 0.93636 0.99346 1.21651 0.89688 0.94653 0.97801 1.61914 1.07452 1.50616 1.04877 1.22190 0.86098 0.98569 1.00185 1.21532 1.00492 0.97719 0.93937 1.21042 0.92512 1.00041 0.95479 1.19603 0.96798 0.93821 0.94363 1.21169 0.89578 1.15994 1.28288 0.91021 1.25026 0.94670 0.97451 0.96436 1.69919 1.05155 1.37784 1.41807 0.86803 0.80111 0.82542 0.79987 1.20342 1.21603 1.19045 1.21696 0.97052 0.99074 0.97218 1.22275 0.99996 0.96930 0.87943 1.23492 1.00397 0.96510 0.97676 1.22841 1.02234 0.96303 0.96329 1.23276 1.00477 0.96399 0.96979 0.91191 0.90916 0.88427 0.90131 0.93867 0.91564 0.95495 0.90521 0.91825 0.92661 0.96871 0.96967 0.92910 0.92458 0.91352 0.95908 0.90569 0.89809 0.89955 0.89816 0.91222 0.90466 0.89788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 9.75 101.05 0.98 -0.27 16 2 S -0.19 -2.24 21.05 -107.50 -2.26 -4.50 16 3 C -0.04 -0.44 0.75 -89.80 -0.07 -0.51 16 4 C 0.09 1.06 4.47 -3.82 -0.02 1.04 16 5 N -0.52 -7.48 3.80 -234.67 -0.89 -8.38 16 6 C 0.06 0.88 5.46 -3.83 -0.02 0.86 16 7 C -0.10 -1.88 5.15 -26.65 -0.14 -2.02 16 8 C -0.07 -1.45 2.20 -90.50 -0.20 -1.65 16 9 C -0.01 -0.21 3.52 -27.89 -0.10 -0.31 16 10 C -0.51 -14.64 9.00 -34.44 -0.31 -14.95 16 11 H 0.07 2.19 7.32 -52.49 -0.38 1.80 16 12 C 0.06 1.91 5.47 -17.82 -0.10 1.81 16 13 N -0.91 -28.32 13.96 55.43 0.77 -27.55 16 14 Si 0.88 22.25 27.47 -169.99 -4.67 17.58 16 15 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 16 H -0.29 -7.28 7.11 56.52 0.40 -6.87 16 17 H -0.27 -6.50 6.54 56.52 0.37 -6.13 16 18 C -0.11 -1.92 5.38 -26.65 -0.14 -2.06 16 19 C 0.06 0.81 4.49 -3.84 -0.02 0.79 16 20 C -0.14 -1.27 5.91 -25.92 -0.15 -1.42 16 21 C -0.14 -1.03 7.74 -25.92 -0.20 -1.23 16 22 C -0.13 -1.06 7.11 -25.92 -0.18 -1.24 16 23 H 0.07 0.51 6.61 -51.93 -0.34 0.17 16 24 H 0.07 0.58 6.53 -51.93 -0.34 0.24 16 25 H 0.10 0.78 8.14 -51.92 -0.42 0.35 16 26 H 0.08 0.91 7.98 -51.93 -0.41 0.50 16 27 H 0.04 0.47 7.39 -51.93 -0.38 0.09 16 28 H 0.07 0.95 8.01 -51.93 -0.42 0.53 16 29 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.08 1.60 7.05 -51.93 -0.37 1.24 16 31 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 32 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 33 H 0.01 0.32 7.20 -51.93 -0.37 -0.05 16 34 H 0.01 0.30 7.57 -51.93 -0.39 -0.10 16 35 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 36 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 37 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 38 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 39 H 0.08 1.01 5.00 -51.92 -0.26 0.75 16 40 H 0.08 0.71 6.00 -51.93 -0.31 0.40 16 41 H 0.08 0.81 6.15 -51.93 -0.32 0.49 16 42 H 0.08 0.61 7.74 -51.93 -0.40 0.21 16 43 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.08 0.60 8.10 -51.93 -0.42 0.18 16 45 H 0.08 0.64 6.19 -51.93 -0.32 0.32 16 LS Contribution 341.73 15.07 5.15 5.15 Total: -1.00 -30.58 341.73 -10.56 -41.14 By element: Atomic # 1 Polarization: 5.70 SS G_CDS: -8.00 Total: -2.30 kcal Atomic # 6 Polarization: -20.49 SS G_CDS: -0.66 Total: -21.15 kcal Atomic # 7 Polarization: -35.80 SS G_CDS: -0.12 Total: -35.92 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -4.67 Total: 17.58 kcal Atomic # 16 Polarization: -2.24 SS G_CDS: -2.26 Total: -4.50 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -30.58 -10.56 -41.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000564990301.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.325 kcal (2) G-P(sol) polarization free energy of solvation -30.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.145 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds