Wall clock time and date at job start Tue Mar 31 2020 05:48:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 119.99935 * 2 1 4 4 H 1.48496 * 109.47209 * 270.00427 * 3 2 1 5 5 H 1.48501 * 109.46849 * 30.00258 * 3 2 1 6 6 H 1.48495 * 109.46970 * 149.99943 * 3 2 1 7 7 C 1.37874 * 120.00015 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99718 * 359.97438 * 7 2 1 9 9 C 1.50698 * 119.99926 * 179.97438 * 7 2 1 10 10 C 1.53002 * 109.47185 * 179.97438 * 9 7 2 11 11 C 1.53036 * 109.46035 * 175.00046 * 10 9 7 12 12 C 1.53201 * 109.31031 * 181.38344 * 11 10 9 13 13 N 1.46924 * 108.77489 * 305.36468 * 12 11 10 14 14 C 1.34773 * 120.62734 * 233.58445 * 13 12 11 15 15 O 1.21284 * 120.00537 * 354.93783 * 14 13 12 16 16 C 1.50701 * 119.99936 * 174.93428 * 14 13 12 17 17 C 1.52995 * 112.85144 * 291.83411 * 16 14 13 18 18 F 1.39902 * 109.47311 * 305.09888 * 17 16 14 19 19 C 1.53787 * 113.61435 * 160.52945 * 16 14 13 20 20 C 1.53783 * 87.08013 * 220.01905 * 19 16 14 21 21 C 1.53780 * 113.61379 * 63.03292 * 16 14 13 22 22 C 1.46923 * 118.74178 * 53.60980 * 13 12 11 23 23 C 1.53043 * 109.45979 * 295.06906 * 10 9 7 24 24 H 0.96997 * 119.99670 * 359.97438 * 1 2 3 25 25 H 1.08995 * 109.47373 * 59.99900 * 9 7 2 26 26 H 1.09001 * 109.47256 * 299.99755 * 9 7 2 27 27 H 1.08999 * 109.45017 * 55.02478 * 10 9 7 28 28 H 1.08999 * 109.50019 * 61.43734 * 11 10 9 29 29 H 1.08996 * 109.49756 * 301.33325 * 11 10 9 30 30 H 1.08999 * 109.58197 * 65.15603 * 12 11 10 31 31 H 1.09002 * 109.58470 * 185.57538 * 12 11 10 32 32 H 1.09004 * 109.46989 * 65.09288 * 17 16 14 33 33 H 1.09000 * 109.47353 * 185.09337 * 17 16 14 34 34 H 1.08995 * 113.61365 * 334.57046 * 19 16 14 35 35 H 1.08999 * 113.61125 * 105.47301 * 19 16 14 36 36 H 1.08993 * 113.61851 * 270.88691 * 20 19 16 37 37 H 1.09003 * 113.61125 * 139.97765 * 20 19 16 38 38 H 1.08997 * 113.61461 * 254.53127 * 21 16 14 39 39 H 1.09004 * 113.61469 * 25.34345 * 21 16 14 40 40 H 1.08998 * 109.58761 * 66.17459 * 22 13 12 41 41 H 1.08994 * 109.58605 * 186.60146 * 22 13 12 42 42 H 1.08999 * 109.50020 * 58.65576 * 23 10 9 43 43 H 1.09009 * 109.49515 * 298.56362 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 6 4.0216 -2.6365 -0.0010 11 6 5.5467 -2.6380 -0.1273 12 6 6.0508 -4.0843 -0.1616 13 7 5.5426 -4.7904 1.0224 14 6 6.3859 -5.4406 1.8485 15 8 7.5633 -5.5250 1.5698 16 6 5.8659 -6.0630 3.1187 17 6 5.4096 -5.0246 4.1455 18 9 6.4536 -4.1281 4.3979 19 6 6.7945 -7.1415 3.7014 20 6 5.5253 -7.9455 4.0292 21 6 4.8418 -7.1851 2.8805 22 6 4.0978 -4.7746 1.2884 23 6 3.6156 -3.3207 1.3064 24 1 -0.4849 0.8400 0.0004 25 1 3.8752 -0.6804 0.8888 26 1 3.8746 -0.6800 -0.8911 27 1 3.5868 -3.1753 -0.8429 28 1 5.9831 -2.1209 0.7272 29 1 5.8361 -2.1300 -1.0472 30 1 5.6881 -4.5763 -1.0642 31 1 7.1407 -4.0917 -0.1518 32 1 4.5499 -4.4803 3.7545 33 1 5.1306 -5.5275 5.0715 34 1 7.4325 -7.6171 2.9566 35 1 7.3440 -6.8140 4.5839 36 1 5.1076 -7.7212 5.0106 37 1 5.6265 -9.0152 3.8455 38 1 3.8149 -6.8930 3.1003 39 1 4.9449 -7.6718 1.9106 40 1 3.5758 -5.3229 0.5041 41 1 3.8991 -5.2376 2.2549 42 1 2.5305 -3.2984 1.4070 43 1 4.0702 -2.7971 2.1475 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000567948558.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:45 Heat of formation + Delta-G solvation = -80.521649 kcal Electronic energy + Delta-G solvation = -23680.959196 eV Core-core repulsion = 20254.454433 eV Total energy + Delta-G solvation = -3426.504763 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.169 amu Computer time = 1.61 seconds Orbital eigenvalues (eV) -47.71539 -40.83862 -38.44301 -37.12144 -34.09682 -32.20939 -31.06949 -29.11180 -28.45155 -26.04751 -25.45354 -24.07486 -22.88984 -21.75952 -20.20881 -19.37316 -18.53475 -17.30876 -16.76287 -16.44049 -16.11032 -15.74698 -15.41682 -14.63688 -14.47809 -14.32802 -14.06382 -13.75656 -13.36471 -13.23890 -12.84043 -12.71136 -12.41974 -12.30552 -12.13944 -11.93798 -11.56551 -11.47051 -11.21435 -11.15828 -10.88815 -10.69354 -10.65787 -10.57007 -10.33892 -9.91573 -9.74129 -9.55033 -9.44023 -9.09556 -8.56117 -8.42955 -6.07463 -4.04923 2.61773 3.06914 3.28925 3.37052 3.41125 3.96297 4.04338 4.30216 4.42380 4.43246 4.56347 4.78395 4.89019 5.02927 5.09983 5.25544 5.28259 5.33389 5.39975 5.40391 5.45800 5.53894 5.58310 5.59582 5.66862 5.74733 5.83005 5.88998 5.99358 6.05474 6.25584 6.26623 6.40292 6.58992 6.76660 6.82617 6.91724 7.22405 7.41187 7.52201 7.76981 8.23284 8.50049 8.96595 9.56052 11.05670 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.025267 B = 0.004372 C = 0.004240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.879648 B = 6403.086804 C = 6602.377255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.067 3.933 3 Si 0.877 3.123 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.266 1.266 7 C -0.516 4.516 8 H 0.073 0.927 9 C -0.010 4.010 10 C -0.071 4.071 11 C -0.133 4.133 12 C 0.113 3.887 13 N -0.602 5.602 14 C 0.533 3.467 15 O -0.543 6.543 16 C -0.144 4.144 17 C 0.086 3.914 18 F -0.207 7.207 19 C -0.107 4.107 20 C -0.143 4.143 21 C -0.120 4.120 22 C 0.096 3.904 23 C -0.123 4.123 24 H 0.262 0.738 25 H 0.015 0.985 26 H 0.012 0.988 27 H 0.064 0.936 28 H 0.061 0.939 29 H 0.071 0.929 30 H 0.065 0.935 31 H 0.084 0.916 32 H 0.089 0.911 33 H 0.086 0.914 34 H 0.093 0.907 35 H 0.075 0.925 36 H 0.085 0.915 37 H 0.075 0.925 38 H 0.083 0.917 39 H 0.092 0.908 40 H 0.070 0.930 41 H 0.082 0.918 42 H 0.091 0.909 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.448 -14.828 7.137 18.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.134 4.134 3 Si 0.704 3.296 4 H -0.204 1.204 5 H -0.215 1.215 6 H -0.191 1.191 7 C -0.554 4.554 8 H 0.091 0.909 9 C -0.047 4.047 10 C -0.090 4.090 11 C -0.171 4.171 12 C -0.009 4.009 13 N -0.335 5.335 14 C 0.320 3.680 15 O -0.421 6.421 16 C -0.148 4.148 17 C 0.031 3.969 18 F -0.188 7.188 19 C -0.145 4.145 20 C -0.180 4.180 21 C -0.158 4.158 22 C -0.026 4.026 23 C -0.161 4.161 24 H 0.072 0.928 25 H 0.033 0.967 26 H 0.030 0.970 27 H 0.083 0.917 28 H 0.080 0.920 29 H 0.089 0.911 30 H 0.083 0.917 31 H 0.103 0.897 32 H 0.107 0.893 33 H 0.104 0.896 34 H 0.112 0.888 35 H 0.094 0.906 36 H 0.103 0.897 37 H 0.094 0.906 38 H 0.102 0.898 39 H 0.110 0.890 40 H 0.088 0.912 41 H 0.100 0.900 42 H 0.109 0.891 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 9.941 -14.722 6.983 19.087 hybrid contribution 0.252 1.175 -0.104 1.206 sum 10.193 -13.548 6.879 18.296 Atomic orbital electron populations 1.69909 1.06268 1.26853 1.51299 1.25014 0.94678 0.99101 0.94624 0.86825 0.80418 0.83826 0.78497 1.20366 1.21469 1.19054 1.21121 0.89377 0.94300 1.50600 0.90859 1.19621 0.97181 0.91622 0.96278 1.20988 0.92206 0.99059 0.96706 1.22069 0.97927 0.94844 1.02242 1.21647 0.99967 0.92650 0.86637 1.48118 1.07800 1.51495 1.26067 1.20063 0.85830 0.77951 0.84140 1.90650 1.16642 1.59763 1.75024 1.22776 1.00955 0.96112 0.94967 1.21860 0.88028 0.88676 0.98349 1.92810 1.60827 1.69730 1.95460 1.22786 0.96100 0.94388 1.01237 1.22911 0.96728 0.99833 0.98572 1.23000 0.97783 0.94681 1.00307 1.22159 0.79508 0.99386 1.01562 1.21951 1.02720 0.92603 0.98785 0.92786 0.96660 0.97021 0.91715 0.92025 0.91082 0.91707 0.89719 0.89344 0.89589 0.88812 0.90638 0.89661 0.90629 0.89842 0.88959 0.91185 0.90014 0.89079 0.92336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.11 13.96 55.43 0.77 -26.34 16 2 C 0.07 1.89 5.47 -17.82 -0.10 1.79 16 3 Si 0.88 21.44 27.47 -169.99 -4.67 16.77 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.27 -6.31 6.54 56.52 0.37 -5.94 16 7 C -0.52 -13.87 8.94 -34.44 -0.31 -14.18 16 8 H 0.07 2.08 7.30 -52.48 -0.38 1.70 16 9 C -0.01 -0.22 3.52 -27.88 -0.10 -0.32 16 10 C -0.07 -1.29 2.10 -90.58 -0.19 -1.48 16 11 C -0.13 -2.13 5.36 -26.61 -0.14 -2.27 16 12 C 0.11 1.66 6.42 -3.71 -0.02 1.63 16 13 N -0.60 -8.62 2.97 -172.77 -0.51 -9.13 16 14 C 0.53 7.95 6.41 -10.99 -0.07 7.87 16 15 O -0.54 -9.93 15.65 5.55 0.09 -9.84 16 16 C -0.14 -1.61 0.51 -154.85 -0.08 -1.69 16 17 C 0.09 0.93 6.49 37.16 0.24 1.17 16 18 F -0.21 -3.03 17.07 2.25 0.04 -3.00 16 19 C -0.11 -1.08 6.89 -25.91 -0.18 -1.25 16 20 C -0.14 -1.02 7.73 -25.92 -0.20 -1.22 16 21 C -0.12 -0.99 5.68 -25.92 -0.15 -1.14 16 22 C 0.10 1.24 5.27 -3.71 -0.02 1.22 16 23 C -0.12 -2.00 5.13 -26.61 -0.14 -2.14 16 24 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 25 H 0.02 0.36 7.20 -51.93 -0.37 -0.02 16 26 H 0.01 0.27 7.57 -51.93 -0.39 -0.13 16 27 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 28 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 29 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 30 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.08 1.30 7.04 -51.93 -0.37 0.94 16 32 H 0.09 0.93 6.01 -51.93 -0.31 0.62 16 33 H 0.09 0.67 7.32 -51.93 -0.38 0.29 16 34 H 0.09 1.04 7.77 -51.93 -0.40 0.64 16 35 H 0.07 0.75 8.10 -51.93 -0.42 0.33 16 36 H 0.08 0.50 7.61 -51.93 -0.40 0.10 16 37 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.08 0.57 7.09 -51.93 -0.37 0.20 16 39 H 0.09 0.79 8.09 -51.93 -0.42 0.37 16 40 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.08 0.86 3.05 -51.93 -0.16 0.70 16 42 H 0.09 1.62 6.91 -51.93 -0.36 1.26 16 43 H 0.06 0.98 8.05 -51.92 -0.42 0.57 16 LS Contribution 330.07 15.07 4.97 4.97 Total: -1.00 -32.21 330.07 -7.61 -39.83 By element: Atomic # 1 Polarization: 5.60 SS G_CDS: -6.85 Total: -1.25 kcal Atomic # 6 Polarization: -10.56 SS G_CDS: -1.45 Total: -12.01 kcal Atomic # 7 Polarization: -35.73 SS G_CDS: 0.26 Total: -35.47 kcal Atomic # 8 Polarization: -9.93 SS G_CDS: 0.09 Total: -9.84 kcal Atomic # 9 Polarization: -3.03 SS G_CDS: 0.04 Total: -3.00 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -4.67 Total: 16.77 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -32.21 -7.61 -39.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567948558.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.696 kcal (2) G-P(sol) polarization free energy of solvation -32.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.61 seconds