Wall clock time and date at job start Tue Mar 31 2020 06:34:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42899 * 114.00443 * 2 1 4 4 C 1.52998 * 109.47191 * 179.97438 * 3 2 1 5 5 C 1.50699 * 109.47097 * 179.97438 * 4 3 2 6 6 N 1.29946 * 126.29012 * 270.02360 * 5 4 3 7 7 O 1.21299 * 110.25034 * 179.68104 * 6 5 4 8 8 C 1.33643 * 109.81311 * 0.47599 * 7 6 5 9 9 C 1.50695 * 126.55201 * 179.79938 * 8 7 6 10 10 N 1.46898 * 109.47054 * 269.68198 * 9 8 7 11 11 C 1.46899 * 111.00127 * 293.95849 * 10 9 8 12 12 C 1.46895 * 111.00109 * 170.00312 * 10 9 8 13 13 H 1.09002 * 109.47766 * 173.01816 * 12 10 9 14 14 C 1.52997 * 109.47589 * 53.01045 * 12 10 9 15 15 C 1.53003 * 109.47272 * 293.01169 * 12 10 9 16 16 C 1.50706 * 109.47145 * 295.59861 * 15 12 10 17 17 H 1.07996 * 119.99668 * 354.98707 * 16 15 12 18 18 C 1.37874 * 119.99812 * 174.98440 * 16 15 12 19 19 N 1.31509 * 120.00378 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 119.99771 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47006 * 90.00022 * 20 18 16 22 22 H 1.48500 * 109.47353 * 210.00427 * 20 18 16 23 23 H 1.48499 * 109.47042 * 330.00161 * 20 18 16 24 24 N 1.31137 * 106.89651 * 359.53216 * 8 7 6 25 25 H 1.08987 * 109.47354 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.46952 * 300.01300 * 1 2 3 27 27 H 1.09005 * 109.46372 * 60.00481 * 1 2 3 28 28 H 1.09000 * 109.47370 * 59.99492 * 3 2 1 29 29 H 1.09006 * 109.46458 * 299.99558 * 3 2 1 30 30 H 1.09000 * 109.47068 * 59.99687 * 4 3 2 31 31 H 1.08996 * 109.47061 * 299.99832 * 4 3 2 32 32 H 1.09001 * 109.47243 * 149.68531 * 9 8 7 33 33 H 1.08994 * 109.47300 * 29.68715 * 9 8 7 34 34 H 1.08994 * 109.47662 * 57.59475 * 11 10 9 35 35 H 1.09001 * 109.46936 * 297.59657 * 11 10 9 36 36 H 1.09001 * 109.47397 * 177.60013 * 11 10 9 37 37 H 1.08997 * 109.46803 * 60.00163 * 14 12 10 38 38 H 1.08997 * 109.47813 * 180.02562 * 14 12 10 39 39 H 1.08999 * 109.47476 * 300.00678 * 14 12 10 40 40 H 1.09000 * 109.46744 * 55.59612 * 15 12 10 41 41 H 1.08993 * 109.47739 * 175.59309 * 15 12 10 42 42 H 0.96998 * 120.00165 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0104 1.3054 0.0000 4 6 3.5356 1.1845 0.0006 5 6 4.1486 2.5612 0.0000 6 7 4.4615 3.2633 -1.0477 7 8 4.9299 4.3310 -0.7131 8 6 4.9709 4.4097 0.6204 9 6 5.4858 5.5677 1.4357 10 7 6.9185 5.3809 1.7012 11 6 7.1461 4.2158 2.5663 12 6 7.5082 6.5932 2.2848 13 1 8.5358 6.3889 2.5856 14 6 6.6937 7.0185 3.5081 15 6 7.4946 7.7174 1.2471 16 6 8.3844 7.3434 0.0896 17 1 8.9699 6.4368 0.1296 18 6 8.4508 8.1587 -1.0203 19 7 7.7381 9.2629 -1.0688 20 14 9.5542 7.6955 -2.4547 21 1 8.7898 6.8638 -3.4187 22 1 10.0290 8.9286 -3.1324 23 1 10.7209 6.9258 -1.9533 24 7 4.4720 3.2889 1.0839 25 1 -0.3633 -1.0275 0.0005 26 1 -0.3633 0.5140 0.8899 27 1 -0.3632 0.5138 -0.8901 28 1 1.6887 1.8464 0.8899 29 1 1.6888 1.8462 -0.8901 30 1 3.8575 0.6433 -0.8891 31 1 3.8568 0.6438 0.8908 32 1 4.9445 5.6160 2.3806 33 1 5.3365 6.4956 0.8837 34 1 6.7235 3.3271 2.0977 35 1 6.6666 4.3805 3.5312 36 1 8.2171 4.0752 2.7122 37 1 6.7034 6.2177 4.2474 38 1 7.1309 7.9183 3.9409 39 1 5.6661 7.2229 3.2073 40 1 6.4764 7.8687 0.8886 41 1 7.8595 8.6375 1.7033 42 1 7.7846 9.8362 -1.8498 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000567989574.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:44 Heat of formation + Delta-G solvation = 26.076506 kcal Electronic energy + Delta-G solvation = -22611.867163 eV Core-core repulsion = 19209.904805 eV Total energy + Delta-G solvation = -3401.962358 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -45.35407 -38.30470 -38.19986 -35.91714 -33.67028 -32.72075 -31.21087 -30.47585 -27.92406 -27.28746 -26.92469 -24.58066 -24.35052 -23.11186 -22.50631 -21.01900 -19.07601 -17.80050 -17.33029 -16.60867 -16.37934 -16.18174 -15.66664 -15.33400 -14.75811 -14.63636 -14.16282 -13.84709 -13.75955 -13.28728 -12.79562 -12.63915 -12.38800 -12.19014 -11.99423 -11.73244 -11.72255 -11.62967 -11.54510 -11.18462 -11.08793 -10.93979 -10.82685 -10.66456 -10.42860 -10.20008 -10.00460 -9.73471 -9.26880 -9.04361 -8.28195 -7.77132 -5.91624 -3.89691 1.34811 2.27387 3.08186 3.24579 3.40944 3.47063 3.50485 3.93386 4.20894 4.47916 4.56518 4.75025 4.78031 5.01654 5.05068 5.09187 5.20572 5.33786 5.41208 5.46388 5.50318 5.54485 5.61154 5.71816 5.73711 5.83296 5.86632 5.94373 6.02588 6.14786 6.24959 6.41341 6.50763 6.77176 6.83107 7.30724 7.44098 7.71228 7.84073 8.08087 8.37138 8.51326 9.15242 9.73006 11.20109 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.019252 B = 0.003941 C = 0.003501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.043905 B = 7103.665536 C = 7996.523310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.390 6.390 3 C 0.069 3.931 4 C -0.022 4.022 5 C 0.160 3.840 6 N -0.384 5.384 7 O 0.097 5.903 8 C 0.217 3.783 9 C 0.138 3.862 10 N -0.510 5.510 11 C 0.019 3.981 12 C 0.089 3.911 13 H 0.079 0.921 14 C -0.187 4.187 15 C 0.027 3.973 16 C -0.493 4.493 17 H 0.059 0.941 18 C 0.054 3.946 19 N -0.902 5.902 20 Si 0.888 3.112 21 H -0.281 1.281 22 H -0.290 1.290 23 H -0.275 1.275 24 N -0.490 5.490 25 H 0.088 0.912 26 H 0.042 0.958 27 H 0.042 0.958 28 H 0.057 0.943 29 H 0.054 0.946 30 H 0.098 0.902 31 H 0.102 0.898 32 H 0.076 0.924 33 H 0.125 0.875 34 H 0.061 0.939 35 H 0.025 0.975 36 H 0.067 0.933 37 H 0.044 0.956 38 H 0.061 0.939 39 H 0.053 0.947 40 H 0.023 0.977 41 H 0.021 0.979 42 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.350 -12.963 6.454 18.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.309 6.309 3 C -0.008 4.008 4 C -0.061 4.061 5 C -0.113 4.113 6 N -0.090 5.090 7 O 0.037 5.963 8 C -0.003 4.003 9 C 0.008 3.992 10 N -0.235 5.235 11 C -0.129 4.129 12 C -0.018 4.018 13 H 0.097 0.903 14 C -0.246 4.246 15 C -0.010 4.010 16 C -0.532 4.532 17 H 0.078 0.922 18 C -0.146 4.146 19 N -0.543 5.543 20 Si 0.716 3.284 21 H -0.207 1.207 22 H -0.216 1.216 23 H -0.200 1.200 24 N -0.225 5.225 25 H 0.106 0.894 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.075 0.925 29 H 0.072 0.928 30 H 0.116 0.884 31 H 0.121 0.879 32 H 0.094 0.906 33 H 0.143 0.857 34 H 0.079 0.921 35 H 0.044 0.956 36 H 0.086 0.914 37 H 0.063 0.937 38 H 0.080 0.920 39 H 0.072 0.928 40 H 0.041 0.959 41 H 0.039 0.961 42 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -11.279 -13.647 5.373 18.502 hybrid contribution 0.066 0.306 -0.113 0.332 sum -11.214 -13.342 5.259 18.205 Atomic orbital electron populations 1.22755 0.80546 1.02870 1.00215 1.87823 1.20077 1.27502 1.95519 1.22382 0.92469 0.84904 1.01095 1.19613 0.93049 0.87617 1.05785 1.25385 1.01799 0.99885 0.84250 1.74659 1.15558 0.94705 1.24117 1.85388 1.57518 1.28339 1.25020 1.28870 0.93427 0.96110 0.81931 1.20688 0.90474 0.91747 0.96241 1.62040 1.09731 1.05081 1.46609 1.22482 1.01649 0.93895 0.94918 1.22005 0.96691 0.89992 0.93142 0.90303 1.22560 1.01257 1.01331 0.99488 1.19261 0.97936 0.91232 0.92595 1.21111 1.24601 1.06826 1.00642 0.92248 1.24959 0.96029 0.95142 0.98425 1.69940 1.41483 1.13194 1.29672 0.86657 0.81082 0.77615 0.83013 1.20744 1.21608 1.20047 1.71906 1.18158 1.03177 1.29239 0.89400 0.93896 0.93931 0.92489 0.92812 0.88389 0.87927 0.90591 0.85720 0.92057 0.95629 0.91411 0.93712 0.91958 0.92790 0.95877 0.96131 0.93234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 11.01 101.05 1.11 1.36 16 2 O -0.39 -4.19 10.70 -35.23 -0.38 -4.56 16 3 C 0.07 0.75 5.92 37.16 0.22 0.97 16 4 C -0.02 -0.26 6.21 -27.88 -0.17 -0.43 16 5 C 0.16 2.44 7.47 -156.37 -1.17 1.27 16 6 N -0.38 -6.71 12.16 30.90 0.38 -6.34 16 7 O 0.10 1.80 11.31 18.10 0.20 2.01 16 8 C 0.22 3.67 7.13 -13.06 -0.09 3.58 16 9 C 0.14 2.25 4.51 -4.98 -0.02 2.23 16 10 N -0.51 -9.09 4.39 -236.34 -1.04 -10.13 16 11 C 0.02 0.29 9.15 60.06 0.55 0.84 16 12 C 0.09 1.64 2.26 -67.72 -0.15 1.48 16 13 H 0.08 1.48 8.03 -51.93 -0.42 1.07 16 14 C -0.19 -2.81 8.44 37.16 0.31 -2.50 16 15 C 0.03 0.63 4.39 -27.88 -0.12 0.50 16 16 C -0.49 -13.25 8.82 -34.44 -0.30 -13.55 16 17 H 0.06 1.61 7.75 -52.49 -0.41 1.20 16 18 C 0.05 1.52 5.46 -17.82 -0.10 1.42 16 19 N -0.90 -26.34 13.29 55.43 0.74 -25.60 16 20 Si 0.89 21.90 29.54 -169.99 -5.02 16.88 16 21 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 22 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 23 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 24 N -0.49 -7.80 10.78 -9.87 -0.11 -7.91 16 25 H 0.09 0.51 8.14 -51.94 -0.42 0.09 16 26 H 0.04 0.29 8.14 -51.93 -0.42 -0.14 16 27 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.10 1.09 8.14 -51.93 -0.42 0.66 16 31 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.08 1.07 6.82 -51.93 -0.35 0.72 16 33 H 0.12 2.20 6.06 -51.93 -0.31 1.89 16 34 H 0.06 0.96 6.62 -51.93 -0.34 0.62 16 35 H 0.03 0.35 6.72 -51.93 -0.35 0.00 16 36 H 0.07 0.99 8.09 -51.93 -0.42 0.57 16 37 H 0.04 0.59 6.76 -51.93 -0.35 0.24 16 38 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.05 0.77 6.55 -51.93 -0.34 0.43 16 40 H 0.02 0.56 6.23 -51.93 -0.32 0.24 16 41 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 345.47 15.07 5.21 5.21 Total: -1.00 -30.38 345.47 -6.52 -36.89 By element: Atomic # 1 Polarization: 2.94 SS G_CDS: -6.56 Total: -3.62 kcal Atomic # 6 Polarization: -2.88 SS G_CDS: 0.06 Total: -2.82 kcal Atomic # 7 Polarization: -49.95 SS G_CDS: -0.03 Total: -49.98 kcal Atomic # 8 Polarization: -2.38 SS G_CDS: -0.17 Total: -2.55 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -30.38 -6.52 -36.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567989574.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.970 kcal (2) G-P(sol) polarization free energy of solvation -30.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.893 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds