Wall clock time and date at job start Tue Mar 31 2020 06:01:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 120.00003 * 2 1 4 4 H 1.48502 * 109.46781 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46885 * 299.99973 * 3 2 1 6 6 H 1.48503 * 109.46852 * 60.00203 * 3 2 1 7 7 C 1.37871 * 119.99658 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00160 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00222 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47326 * 180.02562 * 9 7 2 11 11 C 1.53041 * 109.46040 * 64.92909 * 10 9 7 12 12 C 1.53186 * 109.31469 * 181.38558 * 11 10 9 13 13 N 1.46930 * 108.77815 * 305.37171 * 12 11 10 14 14 C 1.34780 * 120.62826 * 233.58919 * 13 12 11 15 15 O 1.21279 * 119.99744 * 174.76795 * 14 13 12 16 16 C 1.50701 * 120.00321 * 354.76454 * 14 13 12 17 17 C 1.52996 * 115.54856 * 293.43842 * 16 14 13 18 18 C 1.52995 * 109.47418 * 295.19883 * 17 16 14 19 19 F 1.39896 * 109.47407 * 184.18581 * 18 17 16 20 20 C 1.52992 * 117.49868 * 147.76754 * 16 14 13 21 21 C 1.52999 * 117.49753 * 79.10771 * 16 14 13 22 22 C 1.46920 * 118.73820 * 53.60273 * 13 12 11 23 23 C 1.53038 * 109.46043 * 185.00083 * 10 9 7 24 24 H 0.97004 * 119.99782 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.46940 * 60.00278 * 9 7 2 26 26 H 1.09000 * 109.47238 * 300.00072 * 9 7 2 27 27 H 1.09001 * 109.44912 * 304.97011 * 10 9 7 28 28 H 1.08992 * 109.50074 * 301.34056 * 11 10 9 29 29 H 1.09004 * 109.49424 * 61.43432 * 11 10 9 30 30 H 1.09000 * 109.59193 * 185.58406 * 12 11 10 31 31 H 1.08999 * 109.59053 * 65.15271 * 12 11 10 32 32 H 1.09000 * 109.47400 * 55.19839 * 17 16 14 33 33 H 1.08995 * 109.47137 * 175.19440 * 17 16 14 34 34 H 1.09001 * 109.47188 * 304.18205 * 18 17 16 35 35 H 1.09006 * 109.47315 * 64.18288 * 18 17 16 36 36 H 1.09002 * 117.50455 * 0.02562 * 20 16 14 37 37 H 1.08998 * 117.50160 * 145.02522 * 20 16 14 38 38 H 1.09005 * 117.49845 * 214.98451 * 21 16 14 39 39 H 1.09002 * 117.49655 * 359.97438 * 21 16 14 40 40 H 1.09002 * 109.58545 * 186.60953 * 22 13 12 41 41 H 1.08992 * 109.70567 * 66.25403 * 22 13 12 42 42 H 1.08996 * 109.50089 * 298.56407 * 23 10 9 43 43 H 1.09005 * 109.49593 * 58.66662 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 6 3.0412 -3.6524 1.3065 12 6 4.0591 -4.7969 1.2883 13 7 3.3503 -6.0562 1.0228 14 6 3.4920 -7.1114 1.8492 15 8 2.8300 -8.1123 1.6737 16 6 4.4732 -7.0477 2.9913 17 6 5.9482 -6.9773 2.5908 18 6 6.3462 -8.2724 1.8803 19 9 7.7164 -8.2480 1.5991 20 6 4.1235 -7.8166 4.2668 21 6 4.0455 -6.2880 4.2485 22 6 2.4842 -6.1434 -0.1608 23 6 1.4838 -4.9837 -0.1263 24 1 -0.4850 0.8401 0.0004 25 1 0.6240 -2.5567 -0.8903 26 1 0.6246 -2.5571 0.8897 27 1 2.9287 -3.5552 -0.8428 28 1 3.5645 -2.7016 1.4067 29 1 2.3607 -3.7840 2.1478 30 1 4.5598 -4.8562 2.2547 31 1 4.7947 -4.6194 0.5037 32 1 6.1025 -6.1324 1.9196 33 1 6.5611 -6.8491 3.4829 34 1 6.1225 -9.1234 2.5237 35 1 5.7859 -8.3634 0.9497 36 1 3.1839 -8.3690 4.2800 37 1 4.9442 -8.2719 4.8211 38 1 4.8150 -5.7382 4.7906 39 1 3.0545 -5.8339 4.2495 40 1 1.9456 -7.0910 -0.1505 41 1 3.0895 -6.0770 -1.0648 42 1 0.8180 -5.1029 0.7285 43 1 0.8988 -4.9804 -1.0461 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000570929307.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:17 Heat of formation + Delta-G solvation = -88.028215 kcal Electronic energy + Delta-G solvation = -23116.891364 eV Core-core repulsion = 19690.061092 eV Total energy + Delta-G solvation = -3426.830272 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.169 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -47.79701 -40.57604 -37.91613 -36.74872 -34.02923 -32.18046 -31.46120 -30.79185 -28.15864 -25.37465 -24.26080 -22.95146 -22.87271 -22.50974 -21.10210 -19.60407 -18.39585 -17.01128 -16.47698 -16.35270 -16.15198 -15.82633 -15.13453 -14.95570 -14.63640 -14.46644 -14.04894 -13.67931 -13.42908 -13.00685 -12.97104 -12.77656 -12.43418 -12.28316 -11.84098 -11.80437 -11.69005 -11.23704 -11.05817 -11.02279 -10.82047 -10.76220 -10.70242 -10.47724 -10.26973 -10.15110 -9.78629 -9.57349 -9.29799 -8.99511 -8.41712 -8.37984 -6.03296 -4.05499 2.54714 2.97897 3.27495 3.35740 3.38265 3.43376 4.12496 4.36706 4.42198 4.46848 4.49214 4.72126 4.86459 4.91517 5.12818 5.15417 5.31747 5.33090 5.40649 5.43329 5.46803 5.52806 5.60728 5.65021 5.68440 5.74641 5.80764 5.90034 5.95308 6.02662 6.32977 6.34734 6.47759 6.63768 6.91825 6.94841 7.06902 7.50774 7.63477 7.77469 7.96284 8.20092 8.38427 9.01256 9.58671 11.07975 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.022328 B = 0.003912 C = 0.003742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.756038 B = 7155.471833 C = 7481.337032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.057 3.943 3 Si 0.888 3.112 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.516 4.516 8 H 0.056 0.944 9 C 0.027 3.973 10 C -0.081 4.081 11 C -0.118 4.118 12 C 0.101 3.899 13 N -0.598 5.598 14 C 0.548 3.452 15 O -0.547 6.547 16 C -0.159 4.159 17 C -0.110 4.110 18 C 0.063 3.937 19 F -0.219 7.219 20 C -0.145 4.145 21 C -0.153 4.153 22 C 0.110 3.890 23 C -0.129 4.129 24 H 0.259 0.741 25 H 0.016 0.984 26 H 0.015 0.985 27 H 0.058 0.942 28 H 0.085 0.915 29 H 0.058 0.942 30 H 0.082 0.918 31 H 0.065 0.935 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.078 0.922 35 H 0.073 0.927 36 H 0.105 0.895 37 H 0.103 0.897 38 H 0.106 0.894 39 H 0.103 0.897 40 H 0.085 0.915 41 H 0.065 0.935 42 H 0.060 0.940 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.739 -14.080 6.452 18.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.144 4.144 3 Si 0.716 3.284 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.554 4.554 8 H 0.075 0.925 9 C -0.010 4.010 10 C -0.100 4.100 11 C -0.156 4.156 12 C -0.021 4.021 13 N -0.330 5.330 14 C 0.335 3.665 15 O -0.425 6.425 16 C -0.162 4.162 17 C -0.148 4.148 18 C 0.009 3.991 19 F -0.200 7.200 20 C -0.182 4.182 21 C -0.190 4.190 22 C -0.012 4.012 23 C -0.167 4.167 24 H 0.069 0.931 25 H 0.034 0.966 26 H 0.033 0.967 27 H 0.077 0.923 28 H 0.104 0.896 29 H 0.077 0.923 30 H 0.100 0.900 31 H 0.084 0.916 32 H 0.105 0.895 33 H 0.104 0.896 34 H 0.096 0.904 35 H 0.091 0.909 36 H 0.123 0.877 37 H 0.121 0.879 38 H 0.125 0.875 39 H 0.121 0.879 40 H 0.103 0.897 41 H 0.083 0.917 42 H 0.079 0.921 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 10.267 -14.485 6.327 18.848 hybrid contribution 0.408 1.187 -0.091 1.258 sum 10.675 -13.298 6.236 18.157 Atomic orbital electron populations 1.69977 1.06064 1.26444 1.50959 1.25022 0.94790 0.99196 0.95439 0.86596 0.80114 0.84064 0.77581 1.19745 1.21083 1.21086 1.21264 0.92944 0.90923 1.50293 0.92548 1.19128 0.93606 0.91037 0.97206 1.21196 0.98005 0.94647 0.96116 1.21893 0.97533 0.97115 0.99044 1.22036 0.95247 0.83492 1.01334 1.48100 1.46297 1.12725 1.25858 1.19446 0.82210 0.82741 0.82061 1.90668 1.46891 1.32011 1.72899 1.21252 0.94858 1.10225 0.89912 1.21715 0.92156 0.98649 1.02281 1.21934 0.76619 0.99142 1.01454 1.92762 1.34065 1.97818 1.95381 1.23047 1.04010 0.94549 0.96574 1.23155 1.03719 0.95023 0.97097 1.21701 0.92656 1.00427 0.86368 1.22019 0.97600 0.94789 1.02272 0.93088 0.96591 0.96657 0.92336 0.89645 0.92307 0.89964 0.91623 0.89532 0.89558 0.90384 0.90852 0.87690 0.87888 0.87527 0.87856 0.89694 0.91706 0.92096 0.91101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.29 13.29 55.43 0.74 -25.55 16 2 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 3 Si 0.89 20.97 29.54 -169.99 -5.02 15.95 16 4 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 5 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.52 -13.73 8.39 -34.44 -0.29 -14.02 16 8 H 0.06 1.44 7.06 -52.49 -0.37 1.07 16 9 C 0.03 0.66 4.45 -27.88 -0.12 0.54 16 10 C -0.08 -1.52 2.10 -90.58 -0.19 -1.71 16 11 C -0.12 -1.95 5.19 -26.61 -0.14 -2.09 16 12 C 0.10 1.32 5.29 -3.71 -0.02 1.30 16 13 N -0.60 -8.39 2.97 -172.77 -0.51 -8.90 16 14 C 0.55 7.72 6.40 -10.98 -0.07 7.65 16 15 O -0.55 -9.39 16.14 5.56 0.09 -9.30 16 16 C -0.16 -1.67 0.75 -155.67 -0.12 -1.79 16 17 C -0.11 -1.00 5.20 -26.74 -0.14 -1.14 16 18 C 0.06 0.62 7.36 37.16 0.27 0.89 16 19 F -0.22 -2.52 17.36 2.25 0.04 -2.48 16 20 C -0.14 -1.33 9.78 -26.70 -0.26 -1.59 16 21 C -0.15 -1.41 8.99 -26.70 -0.24 -1.65 16 22 C 0.11 1.61 6.44 -3.71 -0.02 1.58 16 23 C -0.13 -2.12 5.36 -26.61 -0.14 -2.26 16 24 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 25 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 26 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 28 H 0.09 1.51 6.91 -51.93 -0.36 1.15 16 29 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.08 0.91 4.86 -51.93 -0.25 0.66 16 31 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.09 0.80 6.45 -51.93 -0.33 0.47 16 33 H 0.09 0.65 8.09 -51.93 -0.42 0.23 16 34 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.07 0.78 7.83 -51.93 -0.41 0.37 16 36 H 0.10 1.10 8.01 -51.93 -0.42 0.68 16 37 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.11 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.10 1.08 8.14 -51.93 -0.42 0.65 16 40 H 0.08 1.28 7.00 -51.93 -0.36 0.91 16 41 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 43 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 LS Contribution 343.98 15.07 5.18 5.18 Total: -1.00 -30.75 343.98 -8.20 -38.94 By element: Atomic # 1 Polarization: 6.10 SS G_CDS: -7.13 Total: -1.04 kcal Atomic # 6 Polarization: -11.22 SS G_CDS: -1.58 Total: -12.80 kcal Atomic # 7 Polarization: -34.68 SS G_CDS: 0.22 Total: -34.46 kcal Atomic # 8 Polarization: -9.39 SS G_CDS: 0.09 Total: -9.30 kcal Atomic # 9 Polarization: -2.52 SS G_CDS: 0.04 Total: -2.48 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -30.75 -8.20 -38.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000570929307.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.085 kcal (2) G-P(sol) polarization free energy of solvation -30.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds