Wall clock time and date at job start Tue Mar 31 2020 07:06:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86807 * 119.99934 * 2 1 4 4 H 1.48502 * 109.46886 * 269.99640 * 3 2 1 5 5 H 1.48494 * 109.47331 * 29.99702 * 3 2 1 6 6 H 1.48500 * 109.47019 * 149.99811 * 3 2 1 7 7 C 1.37877 * 120.00092 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99906 * 0.02562 * 7 2 1 9 9 C 1.50696 * 120.00253 * 179.97438 * 7 2 1 10 10 C 1.52993 * 109.47467 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47449 * 180.02562 * 10 9 7 12 12 C 1.53006 * 109.47401 * 180.02562 * 11 10 9 13 13 C 1.50688 * 109.47258 * 179.97438 * 12 11 10 14 14 O 1.21286 * 120.00264 * 0.86311 * 13 12 11 15 15 N 1.34778 * 120.00155 * 180.86127 * 13 12 11 16 16 C 1.46498 * 120.00065 * 5.95368 * 15 13 12 17 17 C 1.53003 * 109.46912 * 270.00170 * 16 15 13 18 18 C 1.53001 * 109.46851 * 179.97438 * 17 16 15 19 19 C 1.53003 * 109.47257 * 179.97438 * 18 17 16 20 20 O 1.42897 * 109.47421 * 180.02562 * 19 18 17 21 21 C 1.46501 * 119.99969 * 185.95622 * 15 13 12 22 22 C 1.53000 * 117.50379 * 16.36428 * 21 15 13 23 23 C 1.52997 * 117.49833 * 307.70308 * 21 15 13 24 24 H 0.96995 * 119.99935 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.46973 * 60.00399 * 9 7 2 26 26 H 1.08998 * 109.47477 * 300.00816 * 9 7 2 27 27 H 1.09002 * 109.46837 * 60.00145 * 10 9 7 28 28 H 1.09006 * 109.47352 * 300.00398 * 10 9 7 29 29 H 1.09002 * 109.47201 * 60.00101 * 11 10 9 30 30 H 1.09001 * 109.46772 * 299.99936 * 11 10 9 31 31 H 1.09002 * 109.47014 * 59.99798 * 12 11 10 32 32 H 1.08997 * 109.46451 * 300.00185 * 12 11 10 33 33 H 1.09008 * 109.47061 * 29.99720 * 16 15 13 34 34 H 1.08996 * 109.47164 * 150.00025 * 16 15 13 35 35 H 1.08992 * 109.47158 * 299.99489 * 17 16 15 36 36 H 1.09006 * 109.47380 * 60.00131 * 17 16 15 37 37 H 1.08995 * 109.47804 * 299.99980 * 18 17 16 38 38 H 1.09009 * 109.47035 * 60.00222 * 18 17 16 39 39 H 1.09003 * 109.47310 * 300.00872 * 19 18 17 40 40 H 1.09009 * 109.46623 * 60.00329 * 19 18 17 41 41 H 0.96700 * 114.00110 * 180.02562 * 20 19 18 42 42 H 1.09006 * 115.54719 * 162.03623 * 21 15 13 43 43 H 1.08998 * 117.49172 * 0.02562 * 22 21 15 44 44 H 1.08994 * 117.49797 * 145.01829 * 22 21 15 45 45 H 1.09008 * 117.49966 * 214.98084 * 23 21 15 46 46 H 1.09002 * 117.50103 * 359.97438 * 23 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0215 -2.6365 0.0001 11 6 5.5515 -2.6365 0.0001 12 6 6.0616 -4.0791 -0.0004 13 6 7.5684 -4.0791 -0.0010 14 8 8.1749 -3.0289 0.0148 15 7 8.2423 -5.2461 -0.0190 16 6 7.5158 -6.5093 -0.1696 17 6 7.1338 -7.0457 1.2114 18 6 6.3744 -8.3646 1.0541 19 6 5.9929 -8.9014 2.4352 20 8 5.2842 -10.1335 2.2883 21 6 9.7015 -5.2515 0.1120 22 6 10.3679 -3.9806 0.6425 23 6 10.4992 -4.3540 -0.8361 24 1 -0.4850 0.8400 -0.0004 25 1 3.8751 -0.6797 0.8895 26 1 3.8745 -0.6807 -0.8904 27 1 3.6578 -3.1505 -0.8897 28 1 3.6585 -3.1502 0.8903 29 1 5.9148 -2.1227 0.8901 30 1 5.9148 -2.1228 -0.8899 31 1 5.6982 -4.5926 -0.8906 32 1 5.6981 -4.5931 0.8894 33 1 6.6127 -6.3413 -0.7567 34 1 8.1502 -7.2349 -0.6785 35 1 8.0367 -7.2137 1.7984 36 1 6.4993 -6.3200 1.7204 37 1 5.4715 -8.1963 0.4673 38 1 7.0086 -9.0905 0.5450 39 1 6.8961 -9.0697 3.0218 40 1 5.3589 -8.1756 2.9446 41 1 5.0101 -10.5318 3.1257 42 1 10.1447 -6.2070 0.3927 43 1 9.7206 -3.1406 0.8945 44 1 11.2498 -4.0999 1.2719 45 1 11.4675 -4.7188 -1.1790 46 1 9.9384 -3.7598 -1.5577 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588655039.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:38 Heat of formation + Delta-G solvation = -80.543127 kcal Electronic energy + Delta-G solvation = -22298.569401 eV Core-core repulsion = 18995.524012 eV Total energy + Delta-G solvation = -3303.045389 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.56052 -37.63745 -36.79629 -35.82116 -34.82889 -32.98434 -32.44632 -30.05342 -28.12010 -26.15701 -23.73285 -23.28001 -22.46349 -21.61007 -21.36872 -20.02403 -18.91389 -17.65999 -17.17037 -16.73069 -16.44534 -15.92671 -15.74678 -14.77717 -14.57395 -14.22538 -14.20703 -14.13767 -13.83576 -13.23307 -12.94623 -12.65377 -12.43879 -12.31016 -12.16372 -11.97162 -11.73052 -11.54876 -11.36588 -11.26290 -11.10350 -10.95546 -10.72122 -10.51016 -10.48523 -10.31988 -9.86376 -9.66622 -9.61070 -9.29272 -9.11192 -8.57293 -8.48815 -5.99976 -3.97420 2.53159 2.68891 3.35733 3.42720 3.48707 3.76169 3.83160 4.36458 4.49847 4.50595 4.61045 4.71571 4.75906 4.87914 4.92909 4.97701 5.05133 5.16990 5.20876 5.24588 5.27574 5.34631 5.39735 5.45499 5.52900 5.60716 5.74938 5.79871 5.90977 5.96096 6.03045 6.14468 6.21712 6.41770 6.59215 6.68344 6.81765 6.99317 7.23185 7.26026 7.38655 7.51431 7.85420 8.15589 8.58997 9.05078 9.63456 11.13559 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.012295 B = 0.003593 C = 0.002853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2276.855629 B = 7791.666602 C = 9810.368639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.065 3.935 3 Si 0.879 3.121 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.264 1.264 7 C -0.519 4.519 8 H 0.071 0.929 9 C -0.015 4.015 10 C -0.102 4.102 11 C -0.106 4.106 12 C -0.139 4.139 13 C 0.515 3.485 14 O -0.527 6.527 15 N -0.593 5.593 16 C 0.114 3.886 17 C -0.138 4.138 18 C -0.119 4.119 19 C 0.075 3.925 20 O -0.576 6.576 21 C 0.069 3.931 22 C -0.192 4.192 23 C -0.187 4.187 24 H 0.262 0.738 25 H 0.015 0.985 26 H 0.011 0.989 27 H 0.052 0.948 28 H 0.052 0.948 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.091 0.909 32 H 0.092 0.908 33 H 0.086 0.914 34 H 0.081 0.919 35 H 0.068 0.932 36 H 0.072 0.928 37 H 0.075 0.925 38 H 0.070 0.930 39 H 0.044 0.956 40 H 0.048 0.952 41 H 0.380 0.620 42 H 0.124 0.876 43 H 0.137 0.863 44 H 0.087 0.913 45 H 0.092 0.908 46 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.784 -19.044 3.094 27.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.136 4.136 3 Si 0.707 3.293 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.189 1.189 7 C -0.557 4.557 8 H 0.089 0.911 9 C -0.052 4.052 10 C -0.140 4.140 11 C -0.144 4.144 12 C -0.179 4.179 13 C 0.305 3.695 14 O -0.404 6.404 15 N -0.324 5.324 16 C -0.009 4.009 17 C -0.177 4.177 18 C -0.157 4.157 19 C -0.003 4.003 20 O -0.382 6.382 21 C -0.036 4.036 22 C -0.229 4.229 23 C -0.226 4.226 24 H 0.072 0.928 25 H 0.034 0.966 26 H 0.029 0.971 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.109 0.891 32 H 0.110 0.890 33 H 0.105 0.895 34 H 0.099 0.901 35 H 0.086 0.914 36 H 0.091 0.909 37 H 0.094 0.906 38 H 0.089 0.911 39 H 0.062 0.938 40 H 0.067 0.933 41 H 0.227 0.773 42 H 0.142 0.858 43 H 0.155 0.845 44 H 0.105 0.895 45 H 0.111 0.889 46 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 20.043 -18.233 2.461 27.207 hybrid contribution 0.293 0.627 0.618 0.928 sum 20.336 -17.606 3.079 27.074 Atomic orbital electron populations 1.69918 1.06307 1.26820 1.51491 1.25040 0.94725 0.99207 0.94614 0.86778 0.80435 0.83573 0.78542 1.20319 1.21455 1.18906 1.21183 0.89671 0.94378 1.50498 0.91113 1.19569 0.96901 0.92478 0.96285 1.21472 0.91682 0.99924 1.00901 1.21491 0.97227 0.92813 1.02853 1.21876 0.90338 1.01662 1.04031 1.21124 0.90853 0.82639 0.74881 1.90543 1.69680 1.31499 1.48661 1.47452 1.05300 1.06652 1.73036 1.21601 0.97428 0.85009 0.96897 1.21980 1.00847 0.96765 0.98098 1.21441 1.01166 0.96254 0.96825 1.22187 0.94986 0.85656 0.97481 1.86465 1.77354 1.38621 1.35763 1.21633 0.79700 0.96370 1.05864 1.23824 1.02319 1.00452 0.96350 1.23243 1.01083 1.03941 0.94321 0.92819 0.96645 0.97088 0.92882 0.92885 0.91797 0.91840 0.89081 0.88972 0.89530 0.90071 0.91353 0.90939 0.90605 0.91104 0.93817 0.93341 0.77291 0.85800 0.84522 0.89500 0.88911 0.88488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.46 13.96 55.43 0.77 -27.69 16 2 C 0.06 1.94 5.47 -17.82 -0.10 1.84 16 3 Si 0.88 22.42 27.47 -169.99 -4.67 17.75 16 4 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 5 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 6 H -0.26 -6.54 6.54 56.52 0.37 -6.18 16 7 C -0.52 -15.14 9.66 -34.44 -0.33 -15.48 16 8 H 0.07 2.19 7.99 -52.49 -0.42 1.77 16 9 C -0.01 -0.37 4.04 -27.89 -0.11 -0.48 16 10 C -0.10 -2.01 5.15 -26.73 -0.14 -2.15 16 11 C -0.11 -1.77 4.50 -26.73 -0.12 -1.89 16 12 C -0.14 -1.78 4.42 -27.89 -0.12 -1.90 16 13 C 0.51 6.87 7.46 -10.99 -0.08 6.79 16 14 O -0.53 -8.73 11.73 5.55 0.07 -8.67 16 15 N -0.59 -6.08 2.84 -166.11 -0.47 -6.56 16 16 C 0.11 0.83 5.21 -4.04 -0.02 0.81 16 17 C -0.14 -0.92 5.54 -26.73 -0.15 -1.07 16 18 C -0.12 -0.81 5.58 -26.73 -0.15 -0.96 16 19 C 0.07 0.52 7.05 37.16 0.26 0.78 16 20 O -0.58 -4.66 13.66 -35.23 -0.48 -5.14 16 21 C 0.07 0.66 6.60 -67.93 -0.45 0.21 16 22 C -0.19 -2.13 9.63 -26.69 -0.26 -2.38 16 23 C -0.19 -1.95 9.88 -26.70 -0.26 -2.22 16 24 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 25 H 0.02 0.38 7.20 -51.93 -0.37 0.01 16 26 H 0.01 0.27 7.57 -51.93 -0.39 -0.13 16 27 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.06 1.13 8.09 -51.93 -0.42 0.71 16 30 H 0.06 1.12 8.11 -51.93 -0.42 0.70 16 31 H 0.09 1.02 7.18 -51.93 -0.37 0.65 16 32 H 0.09 1.04 6.92 -51.93 -0.36 0.68 16 33 H 0.09 0.61 6.46 -51.92 -0.34 0.27 16 34 H 0.08 0.47 8.07 -51.93 -0.42 0.05 16 35 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.07 0.56 6.93 -51.93 -0.36 0.20 16 37 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.07 0.46 8.14 -51.92 -0.42 0.04 16 39 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 40 H 0.05 0.33 8.14 -51.92 -0.42 -0.09 16 41 H 0.38 1.42 9.12 45.56 0.42 1.83 16 42 H 0.12 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.14 1.95 5.22 -52.12 -0.27 1.68 16 44 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 45 H 0.09 0.77 8.14 -51.92 -0.42 0.35 16 46 H 0.10 1.24 7.60 -51.93 -0.39 0.84 16 LS Contribution 366.80 15.07 5.53 5.53 Total: -1.00 -34.70 366.80 -8.81 -43.51 By element: Atomic # 1 Polarization: 6.88 SS G_CDS: -7.52 Total: -0.64 kcal Atomic # 6 Polarization: -16.07 SS G_CDS: -2.03 Total: -18.10 kcal Atomic # 7 Polarization: -34.54 SS G_CDS: 0.30 Total: -34.24 kcal Atomic # 8 Polarization: -13.40 SS G_CDS: -0.42 Total: -13.81 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -4.67 Total: 17.75 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -34.70 -8.81 -43.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588655039.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.033 kcal (2) G-P(sol) polarization free energy of solvation -34.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds