Wall clock time and date at job start Tue Mar 31 2020 07:07:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 119.99836 * 2 1 4 4 H 1.48503 * 109.46704 * 269.99631 * 3 2 1 5 5 H 1.48496 * 109.46997 * 29.99697 * 3 2 1 6 6 H 1.48500 * 109.46938 * 149.99883 * 3 2 1 7 7 C 1.37875 * 119.99811 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00802 * 0.02562 * 7 2 1 9 9 C 1.50713 * 119.99684 * 180.02562 * 7 2 1 10 10 C 1.52995 * 109.46970 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.47051 * 179.97438 * 10 9 7 12 12 C 1.52995 * 109.47051 * 180.02562 * 11 10 9 13 13 C 1.50697 * 109.47136 * 179.97438 * 12 11 10 14 14 O 1.21283 * 120.00048 * 0.02562 * 13 12 11 15 15 N 1.34774 * 120.00365 * 179.97438 * 13 12 11 16 16 C 1.46500 * 120.00232 * 179.97438 * 15 13 12 17 17 H 1.08997 * 109.47391 * 325.00134 * 16 15 13 18 18 C 1.53006 * 109.47014 * 85.00311 * 16 15 13 19 19 O 1.42900 * 109.46693 * 64.40779 * 18 16 15 20 20 C 1.53001 * 109.47252 * 205.00345 * 16 15 13 21 21 C 1.54269 * 110.03291 * 175.88937 * 20 16 15 22 22 C 1.54887 * 104.19581 * 217.10354 * 21 20 16 23 23 C 1.54885 * 102.74779 * 37.94111 * 22 21 20 24 24 C 1.53873 * 110.03323 * 58.72251 * 20 16 15 25 25 H 0.96993 * 120.00449 * 0.02562 * 1 2 3 26 26 H 1.08995 * 109.47060 * 59.99977 * 9 7 2 27 27 H 1.08998 * 109.46805 * 300.00350 * 9 7 2 28 28 H 1.08995 * 109.47289 * 60.00067 * 10 9 7 29 29 H 1.09001 * 109.47139 * 300.00022 * 10 9 7 30 30 H 1.08995 * 109.47004 * 59.99911 * 11 10 9 31 31 H 1.09004 * 109.46460 * 300.00049 * 11 10 9 32 32 H 1.09008 * 109.47388 * 59.99764 * 12 11 10 33 33 H 1.09001 * 109.47139 * 300.00041 * 12 11 10 34 34 H 0.97001 * 119.99836 * 0.02562 * 15 13 12 35 35 H 1.09000 * 109.47023 * 304.41155 * 18 16 15 36 36 H 1.08999 * 109.46884 * 184.40757 * 18 16 15 37 37 H 0.96707 * 113.99741 * 180.02562 * 19 18 16 38 38 H 1.09009 * 110.01468 * 297.32991 * 20 16 15 39 39 H 1.08998 * 110.48223 * 335.78630 * 21 20 16 40 40 H 1.09003 * 110.48654 * 98.42623 * 21 20 16 41 41 H 1.09000 * 110.75354 * 279.63035 * 22 21 20 42 42 H 1.08995 * 110.91319 * 156.33284 * 22 21 20 43 43 H 1.09000 * 110.49183 * 203.37714 * 23 22 21 44 44 H 1.08997 * 110.59871 * 80.79054 * 23 22 21 45 45 H 1.09001 * 110.02918 * 238.57347 * 24 20 16 46 46 H 1.09000 * 110.03112 * 359.97438 * 24 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0011 10 6 4.0216 -2.6365 0.0010 11 6 5.5516 -2.6365 0.0009 12 6 6.0616 -4.0789 0.0002 13 6 7.5686 -4.0789 -0.0005 14 8 8.1750 -3.0286 0.0001 15 7 8.2425 -5.2461 -0.0007 16 6 9.7075 -5.2460 -0.0020 17 1 10.0704 -4.4044 -0.5919 18 6 10.2187 -5.1200 1.4346 19 8 9.8294 -6.2743 2.1817 20 6 10.2170 -6.5535 -0.6117 21 6 11.7561 -6.5244 -0.7141 22 6 12.0620 -7.2528 -2.0463 23 6 10.9176 -6.7688 -2.9710 24 6 9.6839 -6.7089 -2.0468 25 1 -0.4850 0.8399 -0.0004 26 1 3.8745 -0.6800 0.8911 27 1 3.8752 -0.6803 -0.8888 28 1 3.6586 -3.1501 -0.8892 29 1 3.6579 -3.1505 0.8907 30 1 5.9150 -2.1227 0.8909 31 1 5.9148 -2.1225 -0.8891 32 1 5.6982 -4.5924 -0.8901 33 1 5.6983 -4.5932 0.8899 34 1 7.7575 -6.0861 -0.0008 35 1 9.7926 -4.2285 1.8950 36 1 11.3058 -5.0412 1.4278 37 1 10.1200 -6.2623 3.1040 38 1 9.8986 -7.3988 -0.0015 39 1 12.1166 -5.4964 -0.7497 40 1 12.2043 -7.0580 0.1241 41 1 12.0205 -8.3339 -1.9139 42 1 13.0318 -6.9504 -2.4413 43 1 10.7538 -7.4806 -3.7801 44 1 11.1413 -5.7807 -3.3731 45 1 9.1075 -7.6299 -2.1332 46 1 9.0618 -5.8530 -2.3086 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000589669727.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:07:23 Heat of formation + Delta-G solvation = -131.168888 kcal Electronic energy + Delta-G solvation = -22342.963444 eV Core-core repulsion = 19037.722757 eV Total energy + Delta-G solvation = -3305.240687 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.26968 -38.61568 -36.83613 -35.06691 -34.42910 -32.56942 -31.02995 -29.77658 -29.00732 -27.28725 -25.84592 -23.08101 -21.66881 -21.03019 -20.28354 -19.98964 -19.75769 -17.69267 -16.94633 -16.63956 -16.34365 -15.98737 -15.68677 -15.21217 -14.60096 -14.27067 -14.11595 -13.77602 -13.67779 -13.62453 -12.73248 -12.62415 -12.35440 -12.22259 -12.06538 -11.72238 -11.51634 -11.43275 -11.39650 -11.13906 -11.07221 -10.98081 -10.74090 -10.70158 -10.50742 -10.28670 -9.91097 -9.77639 -9.61923 -9.37060 -9.13374 -9.09347 -8.47477 -5.98627 -3.95929 2.71440 3.10008 3.36706 3.43530 3.49832 3.98556 4.20210 4.26481 4.34892 4.51821 4.74941 4.85521 4.94914 5.04336 5.10105 5.18466 5.25630 5.29450 5.32877 5.34227 5.37154 5.37878 5.46104 5.50237 5.58442 5.65233 5.77788 5.83110 5.89853 5.98664 6.07154 6.10760 6.19630 6.37325 6.46774 6.71918 6.85810 7.02290 7.29432 7.40955 7.48609 7.53720 7.86951 8.27053 8.60597 9.06535 9.64818 11.14929 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.030115 B = 0.002624 C = 0.002565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.534885 B =10666.869597 C =10913.759963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.064 3.936 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.265 1.265 7 C -0.519 4.519 8 H 0.071 0.929 9 C -0.016 4.016 10 C -0.103 4.103 11 C -0.105 4.105 12 C -0.139 4.139 13 C 0.513 3.487 14 O -0.542 6.542 15 N -0.724 5.724 16 C 0.155 3.845 17 H 0.097 0.903 18 C 0.062 3.938 19 O -0.568 6.568 20 C -0.095 4.095 21 C -0.115 4.115 22 C -0.125 4.125 23 C -0.126 4.126 24 C -0.124 4.124 25 H 0.262 0.738 26 H 0.015 0.985 27 H 0.011 0.989 28 H 0.052 0.948 29 H 0.053 0.947 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.402 0.598 35 H 0.051 0.949 36 H 0.052 0.948 37 H 0.377 0.623 38 H 0.087 0.913 39 H 0.066 0.934 40 H 0.067 0.933 41 H 0.066 0.934 42 H 0.065 0.935 43 H 0.064 0.936 44 H 0.065 0.935 45 H 0.064 0.936 46 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.258 -17.548 -0.616 31.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.137 4.137 3 Si 0.707 3.293 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.189 1.189 7 C -0.557 4.557 8 H 0.089 0.911 9 C -0.053 4.053 10 C -0.140 4.140 11 C -0.143 4.143 12 C -0.179 4.179 13 C 0.301 3.699 14 O -0.419 6.419 15 N -0.376 5.376 16 C 0.050 3.950 17 H 0.115 0.885 18 C -0.017 4.017 19 O -0.373 6.373 20 C -0.114 4.114 21 C -0.153 4.153 22 C -0.162 4.162 23 C -0.163 4.163 24 C -0.162 4.162 25 H 0.072 0.928 26 H 0.034 0.966 27 H 0.029 0.971 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.109 0.891 33 H 0.110 0.890 34 H 0.236 0.764 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.224 0.776 38 H 0.105 0.895 39 H 0.085 0.915 40 H 0.086 0.914 41 H 0.085 0.915 42 H 0.084 0.916 43 H 0.082 0.918 44 H 0.084 0.916 45 H 0.083 0.917 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 26.264 -16.816 -1.194 31.208 hybrid contribution 0.346 0.686 0.580 0.963 sum 26.609 -16.129 -0.614 31.122 Atomic orbital electron populations 1.69919 1.06299 1.26801 1.51557 1.25046 0.94737 0.99223 0.94649 0.86770 0.80427 0.83553 0.78525 1.20326 1.21476 1.18908 1.21193 0.89685 0.94375 1.50405 0.91109 1.19578 0.96888 0.92541 0.96283 1.21476 0.91765 0.99863 1.00919 1.21470 0.97144 0.92914 1.02790 1.21769 0.90339 1.01616 1.04180 1.21088 0.90904 0.83210 0.74738 1.90686 1.70634 1.31390 1.49198 1.46049 1.06371 1.09043 1.76159 1.21127 0.80861 0.98866 0.94141 0.88467 1.22649 0.98046 0.88207 0.92758 1.86442 1.81293 1.42852 1.26716 1.21968 0.95686 0.97337 0.96373 1.22375 0.94444 1.00789 0.97730 1.22487 0.98379 1.00066 0.95288 1.22363 0.94942 1.01270 0.97751 1.22244 0.97861 1.02192 0.93874 0.92838 0.96646 0.97076 0.92884 0.92861 0.91896 0.91861 0.89057 0.89024 0.76389 0.93045 0.92989 0.77633 0.89508 0.91489 0.91430 0.91522 0.91620 0.91761 0.91642 0.91697 0.91300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.62 13.96 55.43 0.77 -27.85 16 2 C 0.06 1.93 5.47 -17.82 -0.10 1.83 16 3 Si 0.88 22.56 27.47 -169.99 -4.67 17.89 16 4 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 5 H -0.29 -7.29 7.11 56.52 0.40 -6.88 16 6 H -0.26 -6.59 6.54 56.52 0.37 -6.22 16 7 C -0.52 -15.25 9.66 -34.43 -0.33 -15.58 16 8 H 0.07 2.21 7.99 -52.49 -0.42 1.79 16 9 C -0.02 -0.39 4.04 -27.88 -0.11 -0.50 16 10 C -0.10 -2.06 5.15 -26.73 -0.14 -2.20 16 11 C -0.11 -1.81 4.50 -26.73 -0.12 -1.93 16 12 C -0.14 -1.82 5.70 -27.89 -0.16 -1.98 16 13 C 0.51 6.94 7.79 -10.99 -0.09 6.86 16 14 O -0.54 -9.42 15.65 5.56 0.09 -9.33 16 15 N -0.72 -7.36 4.30 -53.81 -0.23 -7.60 16 16 C 0.16 1.45 1.63 -67.93 -0.11 1.34 16 17 H 0.10 1.07 7.53 -51.93 -0.39 0.67 16 18 C 0.06 0.55 6.59 37.16 0.24 0.79 16 19 O -0.57 -4.60 12.71 -35.23 -0.45 -5.05 16 20 C -0.09 -0.71 2.39 -89.50 -0.21 -0.92 16 21 C -0.12 -0.75 5.44 -25.07 -0.14 -0.89 16 22 C -0.12 -0.76 6.91 -24.74 -0.17 -0.93 16 23 C -0.13 -0.85 6.83 -25.08 -0.17 -1.03 16 24 C -0.12 -0.92 6.18 -25.62 -0.16 -1.08 16 25 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 26 H 0.02 0.39 7.20 -51.93 -0.37 0.01 16 27 H 0.01 0.27 7.57 -51.93 -0.39 -0.12 16 28 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 29 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 30 H 0.06 1.14 8.10 -51.93 -0.42 0.72 16 31 H 0.06 1.14 8.10 -51.93 -0.42 0.72 16 32 H 0.09 1.03 8.14 -51.92 -0.42 0.61 16 33 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 34 H 0.40 3.34 8.60 -40.82 -0.35 2.99 16 35 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 36 H 0.05 0.37 7.50 -51.93 -0.39 -0.02 16 37 H 0.38 1.66 9.12 45.56 0.42 2.08 16 38 H 0.09 0.70 7.52 -51.92 -0.39 0.31 16 39 H 0.07 0.44 7.79 -51.93 -0.40 0.04 16 40 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 46 H 0.07 0.60 7.33 -51.93 -0.38 0.22 16 LS Contribution 365.32 15.07 5.51 5.51 Total: -1.00 -34.46 365.32 -8.48 -42.94 By element: Atomic # 1 Polarization: 7.43 SS G_CDS: -7.74 Total: -0.31 kcal Atomic # 6 Polarization: -14.44 SS G_CDS: -1.76 Total: -16.21 kcal Atomic # 7 Polarization: -35.98 SS G_CDS: 0.54 Total: -35.44 kcal Atomic # 8 Polarization: -14.02 SS G_CDS: -0.36 Total: -14.38 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -4.67 Total: 17.89 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -34.46 -8.48 -42.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589669727.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.226 kcal (2) G-P(sol) polarization free energy of solvation -34.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds