Wall clock time and date at job start Tue Mar 31 2020 07:07:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 119.99836 * 2 1 4 4 H 1.48503 * 109.46704 * 269.99631 * 3 2 1 5 5 H 1.48496 * 109.46997 * 29.99697 * 3 2 1 6 6 H 1.48500 * 109.46938 * 149.99883 * 3 2 1 7 7 C 1.37875 * 119.99811 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00802 * 0.02562 * 7 2 1 9 9 C 1.50713 * 119.99684 * 180.02562 * 7 2 1 10 10 C 1.52995 * 109.46970 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.47051 * 179.97438 * 10 9 7 12 12 C 1.52995 * 109.47051 * 180.02562 * 11 10 9 13 13 C 1.50697 * 109.47136 * 179.97438 * 12 11 10 14 14 O 1.21283 * 120.00048 * 0.02562 * 13 12 11 15 15 N 1.34774 * 120.00365 * 179.97438 * 13 12 11 16 16 C 1.46500 * 120.00232 * 179.97438 * 15 13 12 17 17 H 1.08997 * 109.47391 * 325.00134 * 16 15 13 18 18 C 1.53006 * 109.47014 * 85.00311 * 16 15 13 19 19 O 1.42900 * 109.46693 * 64.40779 * 18 16 15 20 20 C 1.53001 * 109.47252 * 205.00345 * 16 15 13 21 21 C 1.54269 * 110.03291 * 175.88937 * 20 16 15 22 22 C 1.54887 * 104.19581 * 217.10354 * 21 20 16 23 23 C 1.54885 * 102.74779 * 37.94111 * 22 21 20 24 24 C 1.53873 * 110.03323 * 58.72251 * 20 16 15 25 25 H 0.96993 * 120.00449 * 0.02562 * 1 2 3 26 26 H 1.08995 * 109.47060 * 59.99977 * 9 7 2 27 27 H 1.08998 * 109.46805 * 300.00350 * 9 7 2 28 28 H 1.08995 * 109.47289 * 60.00067 * 10 9 7 29 29 H 1.09001 * 109.47139 * 300.00022 * 10 9 7 30 30 H 1.08995 * 109.47004 * 59.99911 * 11 10 9 31 31 H 1.09004 * 109.46460 * 300.00049 * 11 10 9 32 32 H 1.09008 * 109.47388 * 59.99764 * 12 11 10 33 33 H 1.09001 * 109.47139 * 300.00041 * 12 11 10 34 34 H 0.97001 * 119.99836 * 0.02562 * 15 13 12 35 35 H 1.09000 * 109.47023 * 304.41155 * 18 16 15 36 36 H 1.08999 * 109.46884 * 184.40757 * 18 16 15 37 37 H 0.96707 * 113.99741 * 180.02562 * 19 18 16 38 38 H 1.09009 * 110.01468 * 297.32991 * 20 16 15 39 39 H 1.08998 * 110.48223 * 335.78630 * 21 20 16 40 40 H 1.09003 * 110.48654 * 98.42623 * 21 20 16 41 41 H 1.09000 * 110.75354 * 279.63035 * 22 21 20 42 42 H 1.08995 * 110.91319 * 156.33284 * 22 21 20 43 43 H 1.09000 * 110.49183 * 203.37714 * 23 22 21 44 44 H 1.08997 * 110.59871 * 80.79054 * 23 22 21 45 45 H 1.09001 * 110.02918 * 238.57347 * 24 20 16 46 46 H 1.09000 * 110.03112 * 359.97438 * 24 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0011 10 6 4.0216 -2.6365 0.0010 11 6 5.5516 -2.6365 0.0009 12 6 6.0616 -4.0789 0.0002 13 6 7.5686 -4.0789 -0.0005 14 8 8.1750 -3.0286 0.0001 15 7 8.2425 -5.2461 -0.0007 16 6 9.7075 -5.2460 -0.0020 17 1 10.0704 -4.4044 -0.5919 18 6 10.2187 -5.1200 1.4346 19 8 9.8294 -6.2743 2.1817 20 6 10.2170 -6.5535 -0.6117 21 6 11.7561 -6.5244 -0.7141 22 6 12.0620 -7.2528 -2.0463 23 6 10.9176 -6.7688 -2.9710 24 6 9.6839 -6.7089 -2.0468 25 1 -0.4850 0.8399 -0.0004 26 1 3.8745 -0.6800 0.8911 27 1 3.8752 -0.6803 -0.8888 28 1 3.6586 -3.1501 -0.8892 29 1 3.6579 -3.1505 0.8907 30 1 5.9150 -2.1227 0.8909 31 1 5.9148 -2.1225 -0.8891 32 1 5.6982 -4.5924 -0.8901 33 1 5.6983 -4.5932 0.8899 34 1 7.7575 -6.0861 -0.0008 35 1 9.7926 -4.2285 1.8950 36 1 11.3058 -5.0412 1.4278 37 1 10.1200 -6.2623 3.1040 38 1 9.8986 -7.3988 -0.0015 39 1 12.1166 -5.4964 -0.7497 40 1 12.2043 -7.0580 0.1241 41 1 12.0205 -8.3339 -1.9139 42 1 13.0318 -6.9504 -2.4413 43 1 10.7538 -7.4806 -3.7801 44 1 11.1413 -5.7807 -3.3731 45 1 9.1075 -7.6299 -2.1332 46 1 9.0618 -5.8530 -2.3086 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000589669727.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:07:23 Heat of formation + Delta-G solvation = -155.185525 kcal Electronic energy + Delta-G solvation = -22344.004884 eV Core-core repulsion = 19037.722757 eV Total energy + Delta-G solvation = -3306.282127 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.16834 -39.42436 -37.46210 -36.67797 -35.33568 -34.60130 -32.25896 -31.06516 -29.57832 -28.05025 -27.40283 -24.33378 -22.91115 -21.74917 -21.61110 -21.10182 -20.53714 -18.85896 -18.35722 -17.86924 -17.22479 -16.82742 -16.62827 -16.33293 -15.98028 -15.52889 -15.18973 -14.87184 -14.69533 -14.46255 -14.19642 -13.89604 -13.71323 -13.52427 -13.27098 -12.93632 -12.84457 -12.33832 -12.15655 -12.07765 -11.96346 -11.89464 -11.77314 -11.75797 -11.52741 -11.47587 -11.36405 -11.33527 -11.26319 -10.98005 -10.76356 -10.67630 -10.03328 -8.29922 -6.33059 1.34509 1.35941 1.49003 1.67098 2.21007 2.35740 3.05347 3.37442 3.56463 3.70877 3.78849 3.88646 4.03783 4.13063 4.17534 4.25730 4.40510 4.53671 4.57253 4.62180 4.64624 4.67800 4.73715 4.76899 4.80722 4.85500 4.87357 4.93705 5.06126 5.08936 5.14513 5.20029 5.26427 5.26941 5.31386 5.46190 5.51175 5.57321 5.61123 5.65262 5.68418 6.29322 6.59245 6.74810 6.84468 7.29288 7.31746 8.86729 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.030115 B = 0.002624 C = 0.002565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.534885 B =10666.869597 C =10913.759963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.003 3.997 3 Si 0.948 3.052 4 H -0.267 1.267 5 H -0.281 1.281 6 H -0.252 1.252 7 C -0.531 4.531 8 H 0.036 0.964 9 C -0.017 4.017 10 C -0.094 4.094 11 C -0.096 4.096 12 C -0.132 4.132 13 C 0.513 3.487 14 O -0.587 6.587 15 N -0.708 5.708 16 C 0.151 3.849 17 H 0.079 0.921 18 C 0.069 3.931 19 O -0.575 6.575 20 C -0.084 4.084 21 C -0.115 4.115 22 C -0.121 4.121 23 C -0.128 4.128 24 C -0.124 4.124 25 H 0.266 0.734 26 H 0.014 0.986 27 H 0.013 0.987 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.050 0.950 31 H 0.052 0.948 32 H 0.114 0.886 33 H 0.112 0.888 34 H 0.414 0.586 35 H 0.027 0.973 36 H 0.070 0.930 37 H 0.394 0.606 38 H 0.087 0.913 39 H 0.064 0.936 40 H 0.075 0.925 41 H 0.073 0.927 42 H 0.072 0.928 43 H 0.070 0.930 44 H 0.057 0.943 45 H 0.073 0.927 46 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.322 -18.560 -0.557 33.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.193 4.193 3 Si 0.772 3.228 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.176 1.176 7 C -0.569 4.569 8 H 0.055 0.945 9 C -0.054 4.054 10 C -0.132 4.132 11 C -0.134 4.134 12 C -0.172 4.172 13 C 0.301 3.699 14 O -0.467 6.467 15 N -0.359 5.359 16 C 0.047 3.953 17 H 0.097 0.903 18 C -0.010 4.010 19 O -0.383 6.383 20 C -0.103 4.103 21 C -0.153 4.153 22 C -0.159 4.159 23 C -0.165 4.165 24 C -0.162 4.162 25 H 0.075 0.925 26 H 0.032 0.968 27 H 0.031 0.969 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.132 0.868 33 H 0.130 0.870 34 H 0.250 0.750 35 H 0.045 0.955 36 H 0.089 0.911 37 H 0.243 0.757 38 H 0.106 0.894 39 H 0.083 0.917 40 H 0.094 0.906 41 H 0.092 0.908 42 H 0.091 0.909 43 H 0.089 0.911 44 H 0.076 0.924 45 H 0.091 0.909 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 28.343 -17.887 -1.123 33.534 hybrid contribution -0.341 0.904 0.574 1.124 sum 28.002 -16.983 -0.549 32.754 Atomic orbital electron populations 1.70058 1.08123 1.28100 1.52875 1.26004 0.95637 1.03430 0.94278 0.85682 0.79368 0.78560 0.79200 1.19182 1.20685 1.17616 1.21545 0.92110 0.93214 1.49992 0.94520 1.19574 0.93898 0.95843 0.96085 1.21341 0.93778 0.96755 1.01276 1.21264 0.94744 0.95658 1.01715 1.21674 0.90113 0.99106 1.06297 1.21110 0.91053 0.83359 0.74351 1.90673 1.71386 1.33029 1.51602 1.45918 1.06944 1.08606 1.74459 1.21213 0.80102 0.99320 0.94699 0.90297 1.22497 0.98915 0.87513 0.92098 1.86395 1.81578 1.42190 1.28110 1.21890 0.96382 0.95958 0.96110 1.22383 0.93557 1.00911 0.98400 1.22484 0.98358 1.00377 0.94674 1.22377 0.94990 1.01136 0.98015 1.22240 0.98059 1.01866 0.93994 0.92501 0.96812 0.96876 0.92479 0.92576 0.93102 0.92911 0.86785 0.87026 0.75007 0.95461 0.91146 0.75676 0.89424 0.91743 0.90583 0.90842 0.90938 0.91113 0.92391 0.90870 0.92861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.01 13.96 21.45 0.30 -60.71 16 2 C 0.00 0.19 5.47 84.65 0.46 0.65 16 3 Si 0.95 46.35 27.47 68.60 1.88 48.24 16 4 H -0.27 -12.52 7.11 99.48 0.71 -11.82 16 5 H -0.28 -13.32 7.11 99.48 0.71 -12.62 16 6 H -0.25 -11.75 6.54 99.48 0.65 -11.09 16 7 C -0.53 -31.64 9.66 25.60 0.25 -31.40 16 8 H 0.04 2.36 7.99 -2.91 -0.02 2.34 16 9 C -0.02 -0.82 4.04 29.85 0.12 -0.70 16 10 C -0.09 -3.69 5.15 30.59 0.16 -3.53 16 11 C -0.10 -3.19 4.50 30.59 0.14 -3.05 16 12 C -0.13 -3.20 5.70 29.85 0.17 -3.03 16 13 C 0.51 13.36 7.79 87.66 0.68 14.04 16 14 O -0.59 -20.35 15.65 -3.04 -0.05 -20.40 16 15 N -0.71 -13.41 4.30 -442.53 -1.90 -15.31 16 16 C 0.15 2.68 1.63 44.99 0.07 2.75 16 17 H 0.08 1.72 7.53 -2.39 -0.02 1.71 16 18 C 0.07 1.12 6.59 71.98 0.47 1.60 16 19 O -0.58 -8.11 12.71 -148.98 -1.89 -10.01 16 20 C -0.08 -1.11 2.39 -10.07 -0.02 -1.14 16 21 C -0.11 -1.27 5.44 31.67 0.17 -1.09 16 22 C -0.12 -1.22 6.91 31.88 0.22 -1.00 16 23 C -0.13 -1.54 6.83 31.67 0.22 -1.33 16 24 C -0.12 -1.66 6.18 31.32 0.19 -1.46 16 25 H 0.27 15.90 8.31 -92.71 -0.77 15.13 16 26 H 0.01 0.67 7.20 -2.39 -0.02 0.66 16 27 H 0.01 0.63 7.57 -2.39 -0.02 0.61 16 28 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 29 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 30 H 0.05 1.81 8.10 -2.39 -0.02 1.79 16 31 H 0.05 1.86 8.10 -2.38 -0.02 1.84 16 32 H 0.11 2.27 8.14 -2.38 -0.02 2.25 16 33 H 0.11 2.29 8.14 -2.39 -0.02 2.27 16 34 H 0.41 5.96 8.60 -92.71 -0.80 5.16 16 35 H 0.03 0.58 8.14 -2.39 -0.02 0.56 16 36 H 0.07 0.89 7.50 -2.39 -0.02 0.87 16 37 H 0.39 2.61 9.12 -74.05 -0.68 1.93 16 38 H 0.09 1.19 7.52 -2.38 -0.02 1.17 16 39 H 0.06 0.76 7.79 -2.39 -0.02 0.74 16 40 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 41 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 42 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 43 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 44 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 45 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 46 H 0.05 0.88 7.33 -2.39 -0.02 0.87 16 Total: -1.00 -74.97 365.32 1.06 -73.90 By element: Atomic # 1 Polarization: 13.57 SS G_CDS: -0.58 Total: 12.99 kcal Atomic # 6 Polarization: -32.00 SS G_CDS: 3.31 Total: -28.69 kcal Atomic # 7 Polarization: -74.42 SS G_CDS: -1.61 Total: -76.03 kcal Atomic # 8 Polarization: -28.47 SS G_CDS: -1.94 Total: -30.41 kcal Atomic # 14 Polarization: 46.35 SS G_CDS: 1.88 Total: 48.24 kcal Total: -74.97 1.06 -73.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589669727.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.282 kcal (2) G-P(sol) polarization free energy of solvation -74.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds