Wall clock time and date at job start Tue Mar 31 2020 05:30:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34227 * 116.99951 * 2 1 4 4 O 1.20831 * 120.00002 * 0.02562 * 3 2 1 5 5 C 1.50697 * 120.00266 * 179.97438 * 3 2 1 6 6 C 1.52999 * 110.01774 * 300.70678 * 5 3 2 7 7 N 1.46497 * 109.46992 * 58.60612 * 6 5 3 8 8 C 1.34777 * 119.99525 * 179.97438 * 7 6 5 9 9 O 1.21283 * 120.00463 * 0.02562 * 8 7 6 10 10 C 1.50700 * 119.99675 * 179.72583 * 8 7 6 11 11 C 1.53004 * 109.47208 * 180.27843 * 10 8 7 12 12 C 1.50700 * 109.47208 * 180.02562 * 11 10 8 13 13 H 1.08002 * 119.99770 * 359.97438 * 12 11 10 14 14 C 1.37876 * 119.99720 * 179.97438 * 12 11 10 15 15 N 1.31514 * 120.00078 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 119.99915 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.46986 * 89.99876 * 16 14 12 18 18 H 1.48492 * 109.47096 * 210.00138 * 16 14 12 19 19 H 1.48506 * 109.46749 * 330.00135 * 16 14 12 20 20 C 1.54275 * 110.07051 * 62.12268 * 5 3 2 21 21 C 1.54893 * 104.19326 * 95.69850 * 20 5 3 22 22 C 1.54882 * 102.75133 * 37.94196 * 21 20 5 23 23 C 1.53877 * 110.03269 * 179.31188 * 5 3 2 24 24 H 1.09002 * 109.47567 * 60.00026 * 1 2 3 25 25 H 1.09007 * 109.46737 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47101 * 299.99190 * 1 2 3 27 27 H 1.08995 * 109.46838 * 298.60500 * 6 5 3 28 28 H 1.09001 * 109.46617 * 178.60835 * 6 5 3 29 29 H 0.97000 * 120.00580 * 0.02562 * 7 6 5 30 30 H 1.09009 * 109.47352 * 300.27556 * 10 8 7 31 31 H 1.08998 * 109.47585 * 60.27844 * 10 8 7 32 32 H 1.09000 * 109.46887 * 300.00372 * 11 10 8 33 33 H 1.08998 * 109.46846 * 59.99549 * 11 10 8 34 34 H 0.97008 * 119.99515 * 180.02562 * 15 14 12 35 35 H 1.09001 * 110.48563 * 214.37336 * 20 5 3 36 36 H 1.08992 * 110.48474 * 337.01994 * 20 5 3 37 37 H 1.09006 * 110.75523 * 279.62676 * 21 20 5 38 38 H 1.08996 * 110.75613 * 156.25810 * 21 20 5 39 39 H 1.08998 * 110.48670 * 203.38113 * 22 21 20 40 40 H 1.09000 * 110.48762 * 80.73390 * 22 21 20 41 41 H 1.09000 * 110.03052 * 359.95507 * 23 5 3 42 42 H 1.08999 * 110.03197 * 121.38741 * 23 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5662 1.2749 0.0006 6 6 4.1272 0.5695 1.2370 7 7 3.6910 -0.8290 1.2412 8 6 4.0676 -1.6492 2.2422 9 8 4.7672 -1.2294 3.1396 10 6 3.6138 -3.0862 2.2499 11 6 4.1707 -3.7903 3.4889 12 6 3.7174 -5.2275 3.4962 13 1 3.0941 -5.6012 2.6973 14 6 4.0985 -6.0653 4.5229 15 7 4.8571 -5.6100 5.4959 16 14 3.5361 -7.8466 4.5324 17 1 4.5299 -8.6833 3.8131 18 1 3.4133 -8.3194 5.9347 19 1 2.2178 -7.9530 3.8568 20 6 4.1309 0.6258 -1.2800 21 6 4.3396 1.8161 -2.2489 22 6 4.8398 2.9396 -1.3074 23 6 4.0169 2.7461 -0.0169 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 3.7624 1.0667 2.1357 28 1 5.2162 0.6105 1.2157 29 1 3.1318 -1.1649 0.5234 30 1 2.5245 -3.1232 2.2698 31 1 3.9780 -3.5871 1.3529 32 1 5.2599 -3.7533 3.4690 33 1 3.8065 -3.2894 4.3858 34 1 5.1255 -6.1996 6.2180 35 1 5.0805 0.1330 -1.0710 36 1 3.4153 -0.0835 -1.6955 37 1 3.3991 2.0986 -2.7219 38 1 5.0935 1.5763 -2.9986 39 1 4.6413 3.9189 -1.7430 40 1 5.9037 2.8205 -1.1028 41 1 3.1471 3.4029 -0.0266 42 1 4.6353 2.9576 0.8554 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000589706983.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:17 Heat of formation + Delta-G solvation = -148.619908 kcal Electronic energy + Delta-G solvation = -22886.045353 eV Core-core repulsion = 19444.214839 eV Total energy + Delta-G solvation = -3441.830515 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.30319 -39.12097 -38.20192 -36.59456 -34.31585 -33.41070 -31.22019 -30.27984 -29.19850 -27.84706 -26.12771 -24.42486 -23.05899 -21.58623 -21.05893 -19.94997 -19.29656 -17.57698 -17.12578 -16.91476 -16.57192 -15.82998 -15.54830 -15.06449 -15.05315 -14.63495 -14.38376 -13.84144 -13.76205 -13.50584 -13.08222 -12.87649 -12.28779 -12.19564 -12.02098 -11.92349 -11.49478 -11.46382 -11.42224 -11.19111 -11.11801 -10.99457 -10.91900 -10.88296 -10.57765 -10.48462 -9.92121 -9.63442 -9.14903 -8.97941 -8.75261 -8.29784 -5.94032 -3.98232 1.94281 2.41399 3.30470 3.34479 3.40157 3.42643 3.50576 4.09758 4.14376 4.37720 4.49537 4.59358 4.85219 4.91919 4.99161 5.02322 5.04682 5.19847 5.31924 5.34833 5.40876 5.47991 5.52799 5.59225 5.60177 5.73317 5.80323 5.84591 5.89307 6.01250 6.18694 6.27676 6.30069 6.73956 6.94137 7.47564 7.76981 7.89718 7.97324 8.10039 8.41501 8.83162 9.10636 9.65114 11.16923 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.025504 B = 0.003503 C = 0.003300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.592315 B = 7991.150102 C = 8482.522725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.354 6.354 3 C 0.475 3.525 4 O -0.504 6.504 5 C -0.066 4.066 6 C 0.134 3.866 7 N -0.741 5.741 8 C 0.510 3.490 9 O -0.537 6.537 10 C -0.129 4.129 11 C 0.037 3.963 12 C -0.526 4.526 13 H 0.056 0.944 14 C 0.057 3.943 15 N -0.890 5.890 16 Si 0.893 3.107 17 H -0.281 1.281 18 H -0.287 1.287 19 H -0.274 1.274 20 C -0.114 4.114 21 C -0.127 4.127 22 C -0.122 4.122 23 C -0.117 4.117 24 H 0.061 0.939 25 H 0.105 0.895 26 H 0.063 0.937 27 H 0.068 0.932 28 H 0.083 0.917 29 H 0.403 0.597 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.023 0.977 33 H 0.023 0.977 34 H 0.260 0.740 35 H 0.090 0.910 36 H 0.078 0.922 37 H 0.066 0.934 38 H 0.074 0.926 39 H 0.070 0.930 40 H 0.071 0.929 41 H 0.092 0.908 42 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.717 15.887 -17.322 23.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.270 6.270 3 C 0.318 3.682 4 O -0.392 6.392 5 C -0.068 4.068 6 C 0.010 3.990 7 N -0.398 5.398 8 C 0.299 3.701 9 O -0.413 6.413 10 C -0.169 4.169 11 C -0.001 4.001 12 C -0.564 4.564 13 H 0.074 0.926 14 C -0.144 4.144 15 N -0.529 5.529 16 Si 0.720 3.280 17 H -0.207 1.207 18 H -0.213 1.213 19 H -0.199 1.199 20 C -0.152 4.152 21 C -0.164 4.164 22 C -0.159 4.159 23 C -0.155 4.155 24 H 0.080 0.920 25 H 0.124 0.876 26 H 0.082 0.918 27 H 0.086 0.914 28 H 0.101 0.899 29 H 0.240 0.760 30 H 0.097 0.903 31 H 0.097 0.903 32 H 0.042 0.958 33 H 0.041 0.959 34 H 0.070 0.930 35 H 0.108 0.892 36 H 0.096 0.904 37 H 0.085 0.915 38 H 0.093 0.907 39 H 0.089 0.911 40 H 0.090 0.910 41 H 0.111 0.889 42 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -4.365 16.423 -16.476 23.669 hybrid contribution -0.858 -1.070 -0.214 1.388 sum -5.223 15.354 -16.689 23.271 Atomic orbital electron populations 1.23322 0.75868 1.04173 1.02431 1.86419 1.23775 1.33062 1.83733 1.23510 0.91621 0.81436 0.71623 1.90625 1.66829 1.36329 1.45375 1.21565 0.87251 0.99272 0.98670 1.21312 1.00031 0.82715 0.94952 1.46329 1.55340 1.09946 1.28227 1.21554 0.79170 0.89045 0.80352 1.90668 1.37228 1.77314 1.36053 1.21848 1.01758 0.89319 1.03940 1.18901 0.96896 0.93703 0.90583 1.21230 1.31834 0.95403 1.07980 0.92610 1.25026 0.95207 0.98594 0.95583 1.70004 1.35852 1.35649 1.11352 0.86597 0.79009 0.85185 0.77173 1.20689 1.21261 1.19906 1.22546 1.02327 0.97947 0.92353 1.22548 1.01451 0.94855 0.97593 1.22358 0.99824 0.98965 0.94796 1.22298 1.01559 0.92265 0.99331 0.91976 0.87630 0.91774 0.91368 0.89905 0.76000 0.90287 0.90262 0.95820 0.95866 0.92985 0.89190 0.90376 0.91497 0.90724 0.91129 0.91001 0.88907 0.90072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.31 10.56 101.05 1.07 1.37 16 2 O -0.35 -3.86 7.86 -39.25 -0.31 -4.16 16 3 C 0.48 5.58 6.49 36.00 0.23 5.81 16 4 O -0.50 -6.91 14.96 -18.75 -0.28 -7.19 16 5 C -0.07 -0.67 0.63 -154.54 -0.10 -0.76 16 6 C 0.13 1.69 4.20 -4.04 -0.02 1.67 16 7 N -0.74 -10.63 4.87 -60.30 -0.29 -10.93 16 8 C 0.51 9.89 7.83 -10.98 -0.09 9.81 16 9 O -0.54 -12.71 15.98 5.55 0.09 -12.62 16 10 C -0.13 -2.63 5.64 -27.88 -0.16 -2.79 16 11 C 0.04 0.99 4.26 -27.88 -0.12 0.87 16 12 C -0.53 -14.96 9.11 -34.44 -0.31 -15.27 16 13 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 14 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 15 N -0.89 -27.53 13.29 55.43 0.74 -26.79 16 16 Si 0.89 21.67 29.54 -169.99 -5.02 16.65 16 17 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 18 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 19 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 20 C -0.11 -0.95 5.35 -25.07 -0.13 -1.09 16 21 C -0.13 -0.91 6.91 -24.74 -0.17 -1.08 16 22 C -0.12 -0.87 6.83 -25.07 -0.17 -1.04 16 23 C -0.12 -1.04 6.05 -25.61 -0.16 -1.20 16 24 H 0.06 0.48 8.13 -51.93 -0.42 0.06 16 25 H 0.11 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.06 0.58 8.13 -51.93 -0.42 0.16 16 27 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.08 1.03 8.12 -51.93 -0.42 0.60 16 29 H 0.40 4.97 6.10 -40.82 -0.25 4.72 16 30 H 0.08 1.49 8.14 -51.92 -0.42 1.06 16 31 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 32 H 0.02 0.70 8.10 -51.93 -0.42 0.27 16 33 H 0.02 0.69 8.10 -51.93 -0.42 0.26 16 34 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 35 H 0.09 0.75 7.84 -51.93 -0.41 0.34 16 36 H 0.08 0.63 7.64 -51.93 -0.40 0.23 16 37 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.09 0.94 6.40 -51.93 -0.33 0.61 16 42 H 0.08 0.67 7.67 -51.93 -0.40 0.28 16 LS Contribution 344.54 15.07 5.19 5.19 Total: -1.00 -34.99 344.54 -6.92 -41.91 By element: Atomic # 1 Polarization: 6.87 SS G_CDS: -6.81 Total: 0.06 kcal Atomic # 6 Polarization: -1.89 SS G_CDS: -0.22 Total: -2.11 kcal Atomic # 7 Polarization: -38.16 SS G_CDS: 0.44 Total: -37.72 kcal Atomic # 8 Polarization: -23.48 SS G_CDS: -0.50 Total: -23.98 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -34.99 -6.92 -41.91 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589706983.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.709 kcal (2) G-P(sol) polarization free energy of solvation -34.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds