Wall clock time and date at job start Tue Mar 31 2020 06:57:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.46322 * 2 1 4 4 C 1.52994 * 109.47404 * 240.00608 * 2 1 3 5 5 C 1.50704 * 109.47512 * 64.99296 * 4 2 1 6 6 H 1.07993 * 119.99926 * 0.02562 * 5 4 2 7 7 C 1.37878 * 119.99895 * 179.97438 * 5 4 2 8 8 N 1.31513 * 120.00092 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 119.99842 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.46973 * 90.00320 * 9 7 5 11 11 H 1.48498 * 109.47061 * 210.00408 * 9 7 5 12 12 H 1.48505 * 109.47094 * 330.00476 * 9 7 5 13 13 C 1.52992 * 109.47101 * 119.99727 * 2 1 3 14 14 N 1.46895 * 109.47722 * 299.90010 * 13 2 1 15 15 C 1.46423 * 110.99696 * 309.50112 * 14 13 2 16 16 C 1.53272 * 109.77539 * 161.81918 * 15 14 13 17 17 S 1.81893 * 108.41296 * 62.16025 * 16 15 14 18 18 C 1.81686 * 102.31730 * 309.02176 * 17 16 15 19 19 H 1.08996 * 110.41607 * 170.72222 * 18 17 16 20 20 C 1.52948 * 109.21911 * 291.33998 * 18 17 16 21 21 C 1.53047 * 109.34447 * 179.57118 * 20 18 17 22 22 C 1.52963 * 109.60322 * 300.29775 * 21 20 18 23 23 C 1.53010 * 109.64234 * 59.47845 * 22 21 20 24 24 C 1.46607 * 111.00502 * 183.39355 * 14 13 2 25 25 H 1.09006 * 109.60368 * 76.82506 * 24 14 13 26 26 H 1.08996 * 109.47467 * 299.99675 * 1 2 3 27 27 H 1.09007 * 109.46968 * 60.00324 * 1 2 3 28 28 H 1.09004 * 109.46572 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47281 * 184.99674 * 4 2 1 30 30 H 1.09004 * 109.46748 * 304.99463 * 4 2 1 31 31 H 0.97001 * 119.99941 * 179.97438 * 8 7 5 32 32 H 1.09003 * 109.46904 * 179.89533 * 13 2 1 33 33 H 1.09007 * 109.47259 * 59.90053 * 13 2 1 34 34 H 1.09002 * 109.41972 * 281.91150 * 15 14 13 35 35 H 1.09000 * 109.42045 * 41.78806 * 15 14 13 36 36 H 1.08993 * 109.68226 * 181.89217 * 16 15 14 37 37 H 1.09003 * 109.67799 * 302.39820 * 16 15 14 38 38 H 1.09003 * 109.49862 * 59.60231 * 20 18 17 39 39 H 1.08996 * 109.49550 * 299.53820 * 20 18 17 40 40 H 1.09005 * 109.44804 * 60.32842 * 21 20 18 41 41 H 1.08999 * 109.45244 * 180.27730 * 21 20 18 42 42 H 1.09000 * 109.44199 * 179.53436 * 22 21 20 43 43 H 1.09007 * 109.43665 * 299.42122 * 22 21 20 44 44 H 1.08994 * 109.51402 * 59.72412 * 23 22 21 45 45 H 1.09002 * 109.51312 * 179.82946 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0401 -0.7211 -1.2492 5 6 1.6413 0.0572 -2.4766 6 1 1.0806 0.9746 -2.3757 7 6 1.9933 -0.4015 -3.7283 8 7 2.6766 -1.5185 -3.8511 9 14 1.4997 0.5636 -5.2496 10 1 2.5651 1.5432 -5.5816 11 1 1.3131 -0.3701 -6.3891 12 1 0.2283 1.2848 -4.9873 13 6 2.0400 -0.7212 1.2492 14 7 1.5524 -0.0273 2.4487 15 6 1.8308 1.4082 2.3740 16 6 0.9447 2.1610 3.3727 17 16 1.3587 1.5926 5.0502 18 6 1.2584 -0.2138 4.8832 19 1 1.6439 -0.7004 5.7791 20 6 -0.2002 -0.6190 4.6656 21 6 -0.2867 -2.1395 4.5139 22 6 0.5563 -2.5846 3.3177 23 6 2.0131 -2.1686 3.5319 24 6 2.0876 -0.6438 3.6664 25 1 3.1250 -0.3392 3.8049 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3632 -1.0277 -0.0005 29 1 3.1264 -0.7992 -1.2056 30 1 1.6055 -1.7197 -1.2952 31 1 2.9239 -1.8414 -4.7318 32 1 3.1300 -0.7228 1.2482 33 1 1.6752 -1.7484 1.2502 34 1 2.8791 1.5870 2.6132 35 1 1.6231 1.7657 1.3654 36 1 1.1290 3.2322 3.2922 37 1 -0.1044 1.9523 3.1625 38 1 -0.5798 -0.1411 3.7625 39 1 -0.7968 -0.3044 5.5219 40 1 0.0881 -2.6165 5.4195 41 1 -1.3251 -2.4299 4.3538 42 1 0.4995 -3.6685 3.2171 43 1 0.1747 -2.1161 2.4105 44 1 2.3946 -2.6334 4.4410 45 1 2.6124 -2.4894 2.6798 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602474331.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:33 Heat of formation + Delta-G solvation = -17.369882 kcal Electronic energy + Delta-G solvation = -21862.240195 eV Core-core repulsion = 19004.687075 eV Total energy + Delta-G solvation = -2857.553121 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.167 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.90516 -36.50837 -34.26911 -32.27565 -31.56942 -30.44543 -28.82889 -26.79136 -25.30445 -23.32879 -22.80347 -22.39823 -21.55779 -18.94334 -18.66646 -16.93007 -16.45071 -15.50559 -15.29494 -14.98637 -14.94779 -14.38767 -14.25453 -13.58941 -13.35422 -13.02240 -12.66170 -12.54287 -12.42072 -12.27104 -12.03529 -11.86274 -11.53338 -11.43208 -11.32300 -11.10990 -10.90649 -10.80921 -10.53991 -10.51681 -10.32390 -10.19149 -10.14519 -9.56045 -9.39607 -9.18457 -8.96203 -8.35390 -8.08791 -7.66084 -6.00412 -4.01722 1.80522 2.53039 3.30816 3.37575 3.40369 3.91543 4.45622 4.56751 4.73100 4.92003 4.99329 5.14135 5.20893 5.22522 5.27050 5.35721 5.38055 5.41310 5.48849 5.62887 5.66477 5.78201 5.84054 5.88893 5.93357 5.95894 6.08205 6.16380 6.17228 6.25839 6.27643 6.36052 6.46821 6.55831 6.60420 6.95529 7.08099 7.15351 7.33081 7.36159 7.65440 7.80668 7.99159 8.42749 9.04449 9.61958 11.11028 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.025288 B = 0.004436 C = 0.004088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.979954 B = 6310.008101 C = 6847.855905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.087 4.087 3 H 0.057 0.943 4 C 0.029 3.971 5 C -0.513 4.513 6 H 0.055 0.945 7 C 0.056 3.944 8 N -0.896 5.896 9 Si 0.889 3.111 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.274 1.274 13 C 0.061 3.939 14 N -0.535 5.535 15 C 0.044 3.956 16 C -0.067 4.067 17 S -0.291 6.291 18 C -0.030 4.030 19 H 0.104 0.896 20 C -0.103 4.103 21 C -0.110 4.110 22 C -0.119 4.119 23 C -0.116 4.116 24 C 0.091 3.909 25 H 0.048 0.952 26 H 0.040 0.960 27 H 0.053 0.947 28 H 0.041 0.959 29 H 0.012 0.988 30 H 0.016 0.984 31 H 0.259 0.741 32 H 0.027 0.973 33 H 0.081 0.919 34 H 0.041 0.959 35 H 0.104 0.896 36 H 0.102 0.898 37 H 0.090 0.910 38 H 0.081 0.919 39 H 0.061 0.939 40 H 0.054 0.946 41 H 0.061 0.939 42 H 0.056 0.944 43 H 0.082 0.918 44 H 0.063 0.937 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.652 1.162 17.774 18.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.106 4.106 3 H 0.076 0.924 4 C -0.009 4.009 5 C -0.551 4.551 6 H 0.074 0.926 7 C -0.144 4.144 8 N -0.536 5.536 9 Si 0.717 3.283 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.199 1.199 13 C -0.065 4.065 14 N -0.260 5.260 15 C -0.085 4.085 16 C -0.216 4.216 17 S -0.061 6.061 18 C -0.159 4.159 19 H 0.122 0.878 20 C -0.142 4.142 21 C -0.150 4.150 22 C -0.156 4.156 23 C -0.155 4.155 24 C -0.019 4.019 25 H 0.066 0.934 26 H 0.059 0.941 27 H 0.072 0.928 28 H 0.060 0.940 29 H 0.030 0.970 30 H 0.035 0.965 31 H 0.069 0.931 32 H 0.045 0.955 33 H 0.099 0.901 34 H 0.060 0.940 35 H 0.122 0.878 36 H 0.120 0.880 37 H 0.109 0.891 38 H 0.099 0.901 39 H 0.080 0.920 40 H 0.073 0.927 41 H 0.080 0.920 42 H 0.075 0.925 43 H 0.101 0.899 44 H 0.082 0.918 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -3.806 1.672 18.598 19.057 hybrid contribution 0.470 -0.121 -1.935 1.995 sum -3.336 1.551 16.663 17.064 Atomic orbital electron populations 1.21589 0.95605 1.00738 1.00001 1.21370 0.96073 0.98936 0.94182 0.92448 1.19100 0.95892 0.95563 0.90319 1.21206 1.34682 1.08264 0.90973 0.92646 1.25007 0.95307 0.95055 0.99074 1.69961 1.39033 1.21182 1.23402 0.86646 0.78920 0.79835 0.82919 1.20771 1.21290 1.19896 1.22382 0.96824 0.98834 0.88501 1.61220 1.60797 1.02062 1.01956 1.22397 0.97080 0.88385 1.00618 1.23521 1.03555 1.02136 0.92353 1.86657 1.92603 1.07669 1.19143 1.23276 0.99875 0.92127 1.00616 0.87823 1.21717 0.93572 0.96202 1.02714 1.21488 0.99923 0.95372 0.98183 1.21534 0.94474 1.00005 0.99591 1.21778 0.98046 0.93629 1.02035 1.21807 0.95577 0.94909 0.89610 0.93365 0.94101 0.92782 0.94001 0.96983 0.96536 0.93085 0.95478 0.90121 0.94030 0.87848 0.88018 0.89125 0.90057 0.92033 0.92742 0.91997 0.92543 0.89928 0.91847 0.90922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.21 8.74 37.16 0.32 -1.88 16 2 C -0.09 -1.66 1.84 -90.63 -0.17 -1.83 16 3 H 0.06 1.11 5.93 -51.92 -0.31 0.80 16 4 C 0.03 0.71 4.45 -27.88 -0.12 0.59 16 5 C -0.51 -13.99 8.41 -34.44 -0.29 -14.28 16 6 H 0.06 1.47 7.06 -52.49 -0.37 1.10 16 7 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 8 N -0.90 -26.56 13.29 55.43 0.74 -25.82 16 9 Si 0.89 21.41 29.54 -169.99 -5.02 16.39 16 10 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 12 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 13 C 0.06 0.98 3.20 -3.83 -0.01 0.97 16 14 N -0.54 -7.23 2.25 -226.70 -0.51 -7.74 16 15 C 0.04 0.59 4.85 -3.94 -0.02 0.57 16 16 C -0.07 -0.79 6.34 37.30 0.24 -0.56 16 17 S -0.29 -3.60 21.76 -107.50 -2.34 -5.94 16 18 C -0.03 -0.34 2.77 -26.55 -0.07 -0.41 16 19 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 20 C -0.10 -1.12 4.97 -26.73 -0.13 -1.25 16 21 C -0.11 -1.10 5.92 -26.73 -0.16 -1.26 16 22 C -0.12 -1.33 5.39 -26.75 -0.14 -1.48 16 23 C -0.12 -1.31 4.88 -26.59 -0.13 -1.44 16 24 C 0.09 1.12 2.15 -67.53 -0.15 0.97 16 25 H 0.05 0.64 7.94 -51.93 -0.41 0.23 16 26 H 0.04 0.65 7.29 -51.93 -0.38 0.27 16 27 H 0.05 1.07 6.95 -51.93 -0.36 0.71 16 28 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.01 0.32 8.14 -51.93 -0.42 -0.11 16 30 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 32 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.08 1.31 5.17 -51.93 -0.27 1.04 16 34 H 0.04 0.58 7.93 -51.93 -0.41 0.17 16 35 H 0.10 1.49 5.10 -51.93 -0.26 1.22 16 36 H 0.10 1.08 8.14 -51.93 -0.42 0.65 16 37 H 0.09 1.08 7.58 -51.93 -0.39 0.69 16 38 H 0.08 1.02 6.69 -51.93 -0.35 0.67 16 39 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 41 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 43 H 0.08 1.10 6.30 -51.93 -0.33 0.77 16 44 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.07 0.90 6.45 -51.93 -0.33 0.56 16 LS Contribution 335.78 15.07 5.06 5.06 Total: -1.00 -28.09 335.78 -10.97 -39.06 By element: Atomic # 1 Polarization: 6.76 SS G_CDS: -7.96 Total: -1.21 kcal Atomic # 6 Polarization: -18.87 SS G_CDS: -0.93 Total: -19.80 kcal Atomic # 7 Polarization: -33.79 SS G_CDS: 0.23 Total: -33.56 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Atomic # 16 Polarization: -3.60 SS G_CDS: -2.34 Total: -5.94 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -28.09 -10.97 -39.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602474331.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.691 kcal (2) G-P(sol) polarization free energy of solvation -28.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds