Wall clock time and date at job start Tue Mar 31 2020 06:56:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.47010 * 2 1 4 4 C 1.53008 * 109.46840 * 240.00182 * 2 1 3 5 5 C 1.50698 * 109.46818 * 64.99972 * 4 2 1 6 6 H 1.07998 * 120.00892 * 0.02562 * 5 4 2 7 7 C 1.37886 * 119.99560 * 179.97438 * 5 4 2 8 8 N 1.31518 * 119.99998 * 0.02562 * 7 5 4 9 9 Si 1.86793 * 119.99982 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47113 * 60.00349 * 9 7 5 11 11 H 1.48496 * 109.47281 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47403 * 300.00536 * 9 7 5 13 13 C 1.52994 * 109.47035 * 120.00114 * 2 1 3 14 14 N 1.46900 * 109.47295 * 294.53007 * 13 2 1 15 15 C 1.46493 * 110.99782 * 76.11599 * 14 13 2 16 16 C 1.46671 * 115.74794 * 141.81038 * 15 14 13 17 17 S 1.83656 * 108.64896 * 64.56770 * 16 15 14 18 18 C 1.80451 * 102.67793 * 294.42187 * 17 16 15 19 19 C 1.53803 * 113.19997 * 312.95832 * 18 17 16 20 20 C 1.53773 * 87.07884 * 220.48492 * 19 18 17 21 21 C 1.53782 * 87.10020 * 25.40818 * 20 19 18 22 22 C 1.53760 * 115.54924 * 84.35962 * 18 17 16 23 23 C 1.45939 * 110.99747 * 315.64602 * 14 13 2 24 24 H 1.09002 * 109.47051 * 70.60794 * 1 2 3 25 25 H 1.08992 * 109.47155 * 190.60668 * 1 2 3 26 26 H 1.09003 * 109.46720 * 310.60689 * 1 2 3 27 27 H 1.08993 * 109.46486 * 184.99914 * 4 2 1 28 28 H 1.08997 * 109.46939 * 304.99940 * 4 2 1 29 29 H 0.96998 * 119.99960 * 179.97438 * 8 7 5 30 30 H 1.09000 * 109.47093 * 174.53199 * 13 2 1 31 31 H 1.09001 * 109.47352 * 54.53354 * 13 2 1 32 32 H 1.09001 * 108.23048 * 263.43683 * 15 14 13 33 33 H 1.09003 * 108.22895 * 20.18068 * 15 14 13 34 34 H 1.09000 * 109.60676 * 184.31396 * 16 15 14 35 35 H 1.08994 * 109.60327 * 304.64775 * 16 15 14 36 36 H 1.09002 * 113.61628 * 335.03436 * 19 18 17 37 37 H 1.08998 * 113.61326 * 105.93451 * 19 18 17 38 38 H 1.08999 * 113.61329 * 270.85350 * 20 19 18 39 39 H 1.09005 * 113.68600 * 139.97226 * 20 19 18 40 40 H 1.09001 * 113.61631 * 220.04488 * 21 20 19 41 41 H 1.09005 * 113.69442 * 89.14584 * 21 20 19 42 42 H 1.09002 * 108.45748 * 77.93516 * 22 18 17 43 43 H 1.08995 * 108.45995 * 195.45050 * 22 18 17 44 44 H 1.08993 * 109.69382 * 346.61270 * 23 14 13 45 45 H 1.09008 * 109.68513 * 107.18345 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.6412 0.0571 -2.4766 6 1 1.0806 0.9747 -2.3757 7 6 1.9931 -0.4016 -3.7284 8 7 2.6763 -1.5187 -3.8513 9 14 1.4983 0.5627 -5.2497 10 1 2.0895 1.9236 -5.1871 11 1 1.9933 -0.1372 -6.4622 12 1 0.0183 0.6683 -5.3092 13 6 2.0400 -0.7212 1.2492 14 7 1.6611 0.0432 2.4450 15 6 0.2410 -0.1378 2.7556 16 6 -0.0927 -0.2311 4.1808 17 16 0.3101 1.3705 4.9843 18 6 2.1063 1.4501 4.8306 19 6 2.8078 0.1437 5.2388 20 6 3.8744 1.0202 5.9159 21 6 2.7912 2.1044 6.0421 22 6 2.6338 2.0015 3.4957 23 6 1.9099 1.4686 2.2550 24 1 -0.3633 0.3412 -0.9694 25 1 -0.3633 -1.0100 0.1891 26 1 -0.3633 0.6689 0.7802 27 1 3.1262 -0.7994 -1.2056 28 1 1.6053 -1.7198 -1.2952 29 1 2.9235 -1.8416 -4.7319 30 1 3.1256 -0.8068 1.2016 31 1 1.5989 -1.7168 1.2995 32 1 -0.3106 0.7008 2.3306 33 1 -0.1020 -1.0487 2.2649 34 1 -1.1564 -0.4400 4.2945 35 1 0.4883 -1.0303 4.6409 36 1 2.2312 -0.4613 5.9386 37 1 3.1869 -0.4308 4.3936 38 1 4.6952 1.2981 5.2547 39 1 4.2166 0.6312 6.8749 40 1 3.1569 3.1122 5.8452 41 1 2.2093 2.0374 6.9615 42 1 2.5406 3.0874 3.5099 43 1 3.6906 1.7482 3.4112 44 1 2.5333 1.6184 1.3735 45 1 0.9627 1.9931 2.1290 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602694597.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:54 Heat of formation + Delta-G solvation = 25.810830 kcal Electronic energy + Delta-G solvation = -21510.282660 eV Core-core repulsion = 18654.601996 eV Total energy + Delta-G solvation = -2855.680665 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.167 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.79690 -38.34343 -34.44648 -32.27170 -31.93639 -29.69348 -26.95774 -25.96377 -25.81834 -24.91877 -22.92462 -22.56655 -20.65288 -19.18345 -18.51993 -16.83243 -16.43404 -15.72499 -15.31594 -15.05907 -14.81851 -14.45440 -14.41125 -13.99818 -13.50875 -13.09744 -12.68134 -12.45828 -12.30400 -12.15449 -11.98292 -11.75356 -11.69687 -11.22703 -11.02240 -10.85597 -10.81923 -10.69586 -10.61625 -10.50529 -10.45374 -10.21945 -10.18926 -9.64510 -9.43359 -9.36590 -9.10177 -8.36736 -7.91086 -7.57153 -6.01490 -4.03363 1.87710 2.64777 3.30909 3.35840 3.37979 4.10891 4.43326 4.44357 4.53123 4.70389 4.76701 5.05954 5.18529 5.23333 5.30620 5.34162 5.47624 5.51548 5.61754 5.65526 5.70278 5.78593 5.80609 5.85534 5.88750 5.95321 6.00472 6.09644 6.12987 6.17492 6.20100 6.24854 6.36740 6.43461 6.52124 6.80674 6.97963 7.09666 7.31619 7.43105 7.63975 7.78420 7.97422 8.41067 9.02583 9.60341 11.09569 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.030669 B = 0.003885 C = 0.003763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.767754 B = 7205.146561 C = 7438.300827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.122 4.122 3 H 0.064 0.936 4 C 0.031 3.969 5 C -0.516 4.516 6 H 0.054 0.946 7 C 0.057 3.943 8 N -0.896 5.896 9 Si 0.889 3.111 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.278 1.278 13 C 0.057 3.943 14 N -0.521 5.521 15 C 0.035 3.965 16 C -0.058 4.058 17 S -0.280 6.280 18 C -0.024 4.024 19 C -0.116 4.116 20 C -0.139 4.139 21 C -0.115 4.115 22 C -0.083 4.083 23 C 0.043 3.957 24 H 0.064 0.936 25 H 0.041 0.959 26 H 0.039 0.961 27 H 0.014 0.986 28 H 0.014 0.986 29 H 0.260 0.740 30 H 0.072 0.928 31 H 0.067 0.933 32 H 0.061 0.939 33 H 0.072 0.928 34 H 0.102 0.898 35 H 0.085 0.915 36 H 0.077 0.923 37 H 0.089 0.911 38 H 0.081 0.919 39 H 0.067 0.933 40 H 0.069 0.931 41 H 0.087 0.913 42 H 0.060 0.940 43 H 0.067 0.933 44 H 0.081 0.919 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.219 4.040 19.282 19.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.141 4.141 3 H 0.082 0.918 4 C -0.006 4.006 5 C -0.554 4.554 6 H 0.072 0.928 7 C -0.144 4.144 8 N -0.535 5.535 9 Si 0.717 3.283 10 H -0.203 1.203 11 H -0.213 1.213 12 H -0.203 1.203 13 C -0.070 4.070 14 N -0.244 5.244 15 C -0.094 4.094 16 C -0.207 4.207 17 S -0.050 6.050 18 C -0.134 4.134 19 C -0.155 4.155 20 C -0.178 4.178 21 C -0.154 4.154 22 C -0.123 4.123 23 C -0.085 4.085 24 H 0.083 0.917 25 H 0.060 0.940 26 H 0.058 0.942 27 H 0.033 0.967 28 H 0.033 0.967 29 H 0.070 0.930 30 H 0.091 0.909 31 H 0.086 0.914 32 H 0.079 0.921 33 H 0.090 0.910 34 H 0.120 0.880 35 H 0.104 0.896 36 H 0.096 0.904 37 H 0.108 0.892 38 H 0.100 0.900 39 H 0.086 0.914 40 H 0.088 0.912 41 H 0.105 0.895 42 H 0.078 0.922 43 H 0.085 0.915 44 H 0.099 0.901 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -1.591 4.468 20.029 20.583 hybrid contribution 0.016 -0.102 -2.261 2.264 sum -1.574 4.367 17.768 18.364 Atomic orbital electron populations 1.22118 0.96548 0.99898 1.01627 1.21921 0.95397 1.00194 0.96616 0.91811 1.19047 0.95985 0.95359 0.90229 1.21190 1.34867 1.08284 0.91102 0.92803 1.25010 0.95258 0.95056 0.99060 1.69949 1.38873 1.21149 1.23540 0.86709 0.78885 0.80152 0.82567 1.20292 1.21307 1.20318 1.22541 1.00708 0.96525 0.87274 1.62397 1.17466 1.08121 1.36373 1.21482 0.90418 1.02791 0.94722 1.22610 1.03879 0.95972 0.98205 1.86591 1.09475 1.30912 1.78023 1.23859 0.91307 1.00704 0.97566 1.23107 0.96588 0.95173 1.00675 1.22842 0.96691 0.97349 1.00883 1.22964 0.96925 0.98465 0.97043 1.21662 0.99819 0.99070 0.91751 1.22478 1.00693 0.88412 0.96967 0.91728 0.93982 0.94198 0.96733 0.96716 0.92991 0.90920 0.91437 0.92089 0.91015 0.87983 0.89604 0.90409 0.89241 0.90016 0.91438 0.91208 0.89470 0.92153 0.91491 0.90101 0.92475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.61 7.75 37.16 0.29 -2.32 16 2 C -0.12 -2.33 1.91 -90.62 -0.17 -2.50 16 3 H 0.06 1.25 5.70 -51.93 -0.30 0.96 16 4 C 0.03 0.78 4.45 -27.88 -0.12 0.65 16 5 C -0.52 -14.18 8.25 -34.44 -0.28 -14.46 16 6 H 0.05 1.45 7.13 -52.49 -0.37 1.07 16 7 C 0.06 1.62 5.46 -17.81 -0.10 1.52 16 8 N -0.90 -26.63 13.29 55.43 0.74 -25.90 16 9 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 16 10 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 13 C 0.06 0.91 5.01 -3.83 -0.02 0.89 16 14 N -0.52 -7.10 3.11 -239.47 -0.74 -7.84 16 15 C 0.04 0.45 3.26 -7.07 -0.02 0.43 16 16 C -0.06 -0.66 6.09 34.13 0.21 -0.45 16 17 S -0.28 -3.46 21.04 -107.50 -2.26 -5.72 16 18 C -0.02 -0.27 0.87 -89.40 -0.08 -0.35 16 19 C -0.12 -1.24 5.65 -25.91 -0.15 -1.39 16 20 C -0.14 -1.27 7.68 -25.92 -0.20 -1.47 16 21 C -0.11 -1.12 7.21 -25.91 -0.19 -1.31 16 22 C -0.08 -0.99 4.91 -26.23 -0.13 -1.12 16 23 C 0.04 0.59 4.24 -4.24 -0.02 0.57 16 24 H 0.06 1.31 6.71 -51.93 -0.35 0.96 16 25 H 0.04 0.73 7.43 -51.93 -0.39 0.34 16 26 H 0.04 0.63 4.70 -51.93 -0.24 0.38 16 27 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.01 0.39 8.14 -51.93 -0.42 -0.04 16 29 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 30 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 31 H 0.07 1.09 7.54 -51.93 -0.39 0.70 16 32 H 0.06 0.84 4.61 -51.93 -0.24 0.60 16 33 H 0.07 0.94 6.10 -51.93 -0.32 0.62 16 34 H 0.10 1.02 8.14 -51.93 -0.42 0.59 16 35 H 0.09 0.95 7.18 -51.93 -0.37 0.58 16 36 H 0.08 0.83 7.71 -51.93 -0.40 0.43 16 37 H 0.09 1.08 7.34 -51.93 -0.38 0.70 16 38 H 0.08 0.74 7.51 -51.93 -0.39 0.35 16 39 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.07 0.65 8.08 -51.93 -0.42 0.23 16 41 H 0.09 0.85 8.08 -51.93 -0.42 0.43 16 42 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 43 H 0.07 0.78 7.06 -51.93 -0.37 0.42 16 44 H 0.08 1.21 5.74 -51.93 -0.30 0.91 16 45 H 0.06 0.82 6.59 -51.92 -0.34 0.48 16 LS Contribution 333.41 15.07 5.02 5.02 Total: -1.00 -28.38 333.41 -10.91 -39.28 By element: Atomic # 1 Polarization: 7.63 SS G_CDS: -7.66 Total: -0.02 kcal Atomic # 6 Polarization: -20.33 SS G_CDS: -0.98 Total: -21.31 kcal Atomic # 7 Polarization: -33.73 SS G_CDS: -0.01 Total: -33.74 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Atomic # 16 Polarization: -3.46 SS G_CDS: -2.26 Total: -5.72 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -28.38 -10.91 -39.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602694597.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.093 kcal (2) G-P(sol) polarization free energy of solvation -28.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.283 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds