Wall clock time and date at job start Tue Mar 31 2020 06:56:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09005 * 109.47311 * 2 1 4 4 C 1.52993 * 109.47327 * 119.99628 * 2 1 3 5 5 C 1.50703 * 109.47482 * 295.00287 * 4 2 1 6 6 H 1.08003 * 119.99573 * 359.97438 * 5 4 2 7 7 C 1.37876 * 120.00335 * 179.97438 * 5 4 2 8 8 N 1.31516 * 120.00107 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99841 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.46756 * 60.00403 * 9 7 5 11 11 H 1.48502 * 109.47028 * 179.97438 * 9 7 5 12 12 H 1.48491 * 109.47416 * 300.00224 * 9 7 5 13 13 C 1.52998 * 109.47293 * 240.00058 * 2 1 3 14 14 N 1.46894 * 109.47682 * 63.28644 * 13 2 1 15 15 C 1.46497 * 111.00684 * 176.90910 * 14 13 2 16 16 C 1.46642 * 115.73784 * 141.81554 * 15 14 13 17 17 S 1.83649 * 108.66346 * 64.58233 * 16 15 14 18 18 C 1.80452 * 102.71206 * 294.40051 * 17 16 15 19 19 C 1.53834 * 113.17281 * 215.54039 * 18 17 16 20 20 C 1.53787 * 87.07619 * 139.61123 * 19 18 17 21 21 C 1.53743 * 113.32862 * 312.67113 * 18 17 16 22 22 C 1.53809 * 115.52439 * 84.31913 * 18 17 16 23 23 C 1.45823 * 111.11646 * 56.53823 * 14 13 2 24 24 H 1.08993 * 109.47425 * 294.35391 * 1 2 3 25 25 H 1.09003 * 109.46941 * 54.35125 * 1 2 3 26 26 H 1.09004 * 109.47151 * 174.34670 * 1 2 3 27 27 H 1.09001 * 109.47237 * 54.99707 * 4 2 1 28 28 H 1.09000 * 109.47729 * 174.99973 * 4 2 1 29 29 H 0.96996 * 119.99971 * 179.97438 * 8 7 5 30 30 H 1.09010 * 109.46860 * 303.28206 * 13 2 1 31 31 H 1.09003 * 109.47544 * 183.28955 * 13 2 1 32 32 H 1.09002 * 108.22487 * 20.18862 * 15 14 13 33 33 H 1.09000 * 108.07828 * 263.32970 * 15 14 13 34 34 H 1.09000 * 109.60334 * 304.83243 * 16 15 14 35 35 H 1.08999 * 109.74360 * 184.41510 * 16 15 14 36 36 H 1.09001 * 113.61301 * 254.15237 * 19 18 17 37 37 H 1.08994 * 113.61794 * 25.06203 * 19 18 17 38 38 H 1.08995 * 113.61076 * 220.02686 * 20 19 18 39 39 H 1.08997 * 113.69144 * 89.13065 * 20 19 18 40 40 H 1.08997 * 113.61297 * 335.09966 * 21 18 17 41 41 H 1.09005 * 113.60957 * 105.91436 * 21 18 17 42 42 H 1.08996 * 108.45811 * 77.96342 * 22 18 17 43 43 H 1.09002 * 108.45642 * 195.48194 * 22 18 17 44 44 H 1.09001 * 109.77881 * 107.23433 * 23 14 13 45 45 H 1.09007 * 109.52821 * 346.71756 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2492 5 6 1.6413 0.0572 2.4766 6 1 1.0806 0.9747 2.3756 7 6 1.9923 -0.4021 3.7283 8 7 2.6747 -1.5196 3.8513 9 14 1.4987 0.5631 5.2496 10 1 0.0188 0.6706 5.3089 11 1 1.9926 -0.1375 6.4622 12 1 2.0917 1.9231 5.1871 13 6 2.0400 -0.7212 -1.2492 14 7 1.6163 0.0155 -2.4474 15 6 2.1491 -0.6065 -3.6620 16 6 1.2483 -0.6185 -4.8191 17 16 0.9372 1.1150 -5.3396 18 6 0.0357 1.7964 -3.9327 19 6 -1.0472 2.8098 -4.3410 20 6 -1.9397 2.1711 -3.2637 21 6 -1.1070 0.8907 -3.4454 22 6 0.9065 2.3129 -2.7749 23 6 2.0788 1.3978 -2.4051 24 1 -0.3634 0.4237 0.9361 25 1 -0.3633 0.5990 -0.8351 26 1 -0.3634 -1.0227 -0.1012 27 1 1.6053 -1.7197 1.2952 28 1 3.1263 -0.7994 1.2056 29 1 2.9220 -1.8424 4.7319 30 1 1.6294 -1.7306 -1.2791 31 1 3.1284 -0.7726 -1.2203 32 1 2.4173 -1.6367 -3.4280 33 1 3.0583 -0.0751 -3.9432 34 1 0.3060 -1.0924 -4.5441 35 1 1.7092 -1.1693 -5.6389 36 1 -0.7790 3.8448 -4.1284 37 1 -1.4181 2.6675 -5.3559 38 1 -2.9806 2.0618 -3.5676 39 1 -1.8317 2.6262 -2.2792 40 1 -1.4943 0.2237 -4.2156 41 1 -0.8871 0.3752 -2.5105 42 1 1.3047 3.2891 -3.0514 43 1 0.2741 2.4359 -1.8957 44 1 2.8919 1.5367 -3.1176 45 1 2.4267 1.6350 -1.3996 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602694598.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:58 Heat of formation + Delta-G solvation = 18.651450 kcal Electronic energy + Delta-G solvation = -21679.088675 eV Core-core repulsion = 18823.097557 eV Total energy + Delta-G solvation = -2855.991119 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.167 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.67029 -37.92513 -34.85657 -32.42202 -31.72377 -29.77121 -26.91806 -25.93372 -25.45304 -24.77156 -22.84682 -22.71766 -20.69365 -19.05906 -18.59311 -16.75857 -16.47135 -15.72116 -15.25122 -14.93688 -14.79534 -14.45928 -14.37637 -14.11178 -13.31638 -12.97684 -12.71616 -12.59502 -12.30296 -12.15487 -11.95318 -11.80167 -11.54272 -11.34035 -11.03932 -10.89453 -10.78108 -10.72051 -10.49852 -10.48351 -10.31741 -10.27278 -10.03744 -9.61066 -9.41821 -9.10447 -8.97893 -8.34601 -8.12735 -7.59065 -5.99774 -4.01122 1.86717 2.64293 3.32521 3.37294 3.39405 4.03274 4.45953 4.48359 4.59926 4.75631 4.84503 5.02655 5.16760 5.20149 5.31869 5.36246 5.49453 5.54558 5.65000 5.68981 5.71966 5.77096 5.77724 5.86780 5.91551 5.94173 6.00569 6.09716 6.20285 6.21800 6.24718 6.38580 6.48405 6.51142 6.68221 6.96913 7.12908 7.18224 7.31681 7.41742 7.66406 7.81698 7.99903 8.43482 9.04885 9.62410 11.11690 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.025782 B = 0.004358 C = 0.003973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.788275 B = 6423.058966 C = 7045.107825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.084 4.084 3 H 0.058 0.942 4 C 0.028 3.972 5 C -0.513 4.513 6 H 0.055 0.945 7 C 0.057 3.943 8 N -0.897 5.897 9 Si 0.889 3.111 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.278 1.278 13 C 0.060 3.940 14 N -0.519 5.519 15 C 0.041 3.959 16 C -0.057 4.057 17 S -0.281 6.281 18 C -0.022 4.022 19 C -0.115 4.115 20 C -0.139 4.139 21 C -0.124 4.124 22 C -0.081 4.081 23 C 0.040 3.960 24 H 0.055 0.945 25 H 0.044 0.956 26 H 0.038 0.962 27 H 0.016 0.984 28 H 0.012 0.988 29 H 0.260 0.740 30 H 0.070 0.930 31 H 0.029 0.971 32 H 0.067 0.933 33 H 0.049 0.951 34 H 0.088 0.912 35 H 0.102 0.898 36 H 0.069 0.931 37 H 0.086 0.914 38 H 0.067 0.933 39 H 0.083 0.917 40 H 0.076 0.924 41 H 0.099 0.901 42 H 0.059 0.941 43 H 0.072 0.928 44 H 0.052 0.948 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.001 4.738 -17.600 18.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.102 4.102 3 H 0.077 0.923 4 C -0.009 4.009 5 C -0.551 4.551 6 H 0.073 0.927 7 C -0.144 4.144 8 N -0.536 5.536 9 Si 0.717 3.283 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C -0.067 4.067 14 N -0.243 5.243 15 C -0.089 4.089 16 C -0.205 4.205 17 S -0.051 6.051 18 C -0.133 4.133 19 C -0.154 4.154 20 C -0.178 4.178 21 C -0.162 4.162 22 C -0.122 4.122 23 C -0.089 4.089 24 H 0.074 0.926 25 H 0.063 0.937 26 H 0.058 0.942 27 H 0.034 0.966 28 H 0.030 0.970 29 H 0.070 0.930 30 H 0.088 0.912 31 H 0.047 0.953 32 H 0.085 0.915 33 H 0.067 0.933 34 H 0.106 0.894 35 H 0.120 0.880 36 H 0.088 0.912 37 H 0.105 0.895 38 H 0.086 0.914 39 H 0.101 0.899 40 H 0.094 0.906 41 H 0.117 0.883 42 H 0.077 0.923 43 H 0.091 0.909 44 H 0.070 0.930 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -5.122 5.084 -18.469 19.829 hybrid contribution 0.431 -0.171 2.019 2.071 sum -4.692 4.914 -16.450 17.798 Atomic orbital electron populations 1.21700 0.95761 1.00385 1.00489 1.21319 0.96025 0.99011 0.93857 0.92334 1.19101 0.95865 0.95577 0.90388 1.21172 1.34749 1.08253 0.90968 0.92675 1.25006 0.95300 0.95058 0.99058 1.69952 1.39004 1.21175 1.23500 0.86708 0.78913 0.80123 0.82559 1.20268 1.21357 1.20317 1.22448 0.97403 0.97624 0.89259 1.62222 1.58349 1.02164 1.01577 1.21139 0.96179 1.00312 0.91235 1.22509 1.03648 0.94318 1.00046 1.86557 1.76885 1.13382 1.28280 1.23870 0.95005 0.99480 0.94895 1.22977 0.95112 0.97683 0.99631 1.22845 0.98216 0.97603 0.99090 1.23241 0.93783 0.96128 1.03093 1.21640 0.96680 0.97681 0.96172 1.22485 0.95733 0.88753 1.01905 0.92567 0.93676 0.94244 0.96602 0.97002 0.93030 0.91174 0.95274 0.91495 0.93277 0.89371 0.87990 0.91236 0.89542 0.91445 0.89853 0.90556 0.88288 0.92283 0.90948 0.92965 0.90017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.30 8.89 37.15 0.33 -1.97 16 2 C -0.08 -1.61 2.10 -90.63 -0.19 -1.80 16 3 H 0.06 1.15 5.87 -51.93 -0.30 0.85 16 4 C 0.03 0.70 4.45 -27.89 -0.12 0.58 16 5 C -0.51 -14.06 8.33 -34.44 -0.29 -14.34 16 6 H 0.06 1.47 7.08 -52.48 -0.37 1.10 16 7 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 8 N -0.90 -26.68 13.29 55.43 0.74 -25.95 16 9 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 10 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 13 C 0.06 0.97 4.08 -3.83 -0.02 0.96 16 14 N -0.52 -7.09 2.48 -239.55 -0.59 -7.68 16 15 C 0.04 0.49 4.83 -7.08 -0.03 0.46 16 16 C -0.06 -0.62 6.10 34.12 0.21 -0.41 16 17 S -0.28 -3.43 21.03 -107.50 -2.26 -5.69 16 18 C -0.02 -0.26 0.86 -89.38 -0.08 -0.34 16 19 C -0.11 -1.20 7.20 -25.89 -0.19 -1.38 16 20 C -0.14 -1.43 7.69 -25.90 -0.20 -1.63 16 21 C -0.12 -1.44 5.68 -25.92 -0.15 -1.59 16 22 C -0.08 -1.01 4.90 -26.18 -0.13 -1.14 16 23 C 0.04 0.54 5.04 -4.28 -0.02 0.52 16 24 H 0.06 1.13 6.81 -51.93 -0.35 0.77 16 25 H 0.04 0.72 4.77 -51.93 -0.25 0.47 16 26 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 27 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.26 7.35 8.31 -40.82 -0.34 7.02 16 30 H 0.07 1.16 8.12 -51.92 -0.42 0.74 16 31 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.07 0.78 7.56 -51.93 -0.39 0.38 16 33 H 0.05 0.61 6.76 -51.93 -0.35 0.26 16 34 H 0.09 0.98 7.20 -51.93 -0.37 0.60 16 35 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.07 0.69 8.08 -51.93 -0.42 0.27 16 37 H 0.09 0.89 8.08 -51.93 -0.42 0.47 16 38 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.08 0.88 7.52 -51.93 -0.39 0.49 16 40 H 0.08 0.88 7.73 -51.93 -0.40 0.47 16 41 H 0.10 1.32 5.00 -51.93 -0.26 1.06 16 42 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.07 0.95 6.37 -51.93 -0.33 0.62 16 44 H 0.05 0.70 6.76 -51.93 -0.35 0.35 16 45 H 0.08 1.23 5.36 -51.93 -0.28 0.95 16 LS Contribution 337.62 15.07 5.09 5.09 Total: -1.00 -28.36 337.62 -10.78 -39.14 By element: Atomic # 1 Polarization: 7.00 SS G_CDS: -7.76 Total: -0.76 kcal Atomic # 6 Polarization: -19.63 SS G_CDS: -0.97 Total: -20.60 kcal Atomic # 7 Polarization: -33.77 SS G_CDS: 0.14 Total: -33.63 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Atomic # 16 Polarization: -3.43 SS G_CDS: -2.26 Total: -5.69 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -28.36 -10.78 -39.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602694598.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.795 kcal (2) G-P(sol) polarization free energy of solvation -28.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.144 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds