Wall clock time and date at job start Tue Mar 31 2020 05:52:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86802 * 120.00015 * 2 1 4 4 H 1.48494 * 109.47101 * 270.00029 * 3 2 1 5 5 H 1.48500 * 109.47003 * 30.00276 * 3 2 1 6 6 H 1.48502 * 109.46630 * 150.00079 * 3 2 1 7 7 C 1.37880 * 119.99789 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99730 * 171.28891 * 7 2 1 9 9 C 1.50699 * 120.00291 * 351.29261 * 7 2 1 10 10 C 1.52999 * 115.54676 * 324.23487 * 9 7 2 11 11 N 1.46901 * 109.47423 * 306.34451 * 10 9 7 12 12 C 1.47227 * 110.99618 * 286.60129 * 11 10 9 13 13 C 1.53230 * 108.38285 * 167.11979 * 12 11 10 14 14 C 1.50339 * 109.62019 * 49.55553 * 13 12 11 15 15 C 1.31476 * 122.67309 * 343.03344 * 14 13 12 16 16 C 1.47819 * 118.46880 * 180.62569 * 15 14 13 17 17 C 1.39527 * 120.13860 * 244.72808 * 16 15 14 18 18 C 1.37974 * 119.85562 * 179.75993 * 17 16 15 19 19 C 1.38348 * 120.14022 * 0.48726 * 18 17 16 20 20 C 1.38339 * 120.28664 * 359.76299 * 19 18 17 21 21 C 1.37976 * 120.14104 * 0.02562 * 20 19 18 22 22 C 1.46831 * 111.00235 * 163.59546 * 11 10 9 23 23 C 1.52997 * 117.50015 * 109.90503 * 9 7 2 24 24 C 1.52993 * 117.49871 * 178.56949 * 9 7 2 25 25 H 0.96999 * 119.99812 * 5.00703 * 1 2 3 26 26 H 1.08999 * 109.47077 * 186.34057 * 10 9 7 27 27 H 1.09004 * 109.47416 * 66.34354 * 10 9 7 28 28 H 1.08993 * 109.62604 * 286.99060 * 12 11 10 29 29 H 1.08992 * 109.62624 * 47.37423 * 12 11 10 30 30 H 1.09000 * 109.62261 * 289.41810 * 13 12 11 31 31 H 1.09003 * 109.33306 * 169.50517 * 13 12 11 32 32 H 1.07991 * 118.66279 * 163.32087 * 14 13 12 33 33 H 1.08004 * 120.07800 * 359.97406 * 17 16 15 34 34 H 1.08003 * 119.93333 * 180.22610 * 18 17 16 35 35 H 1.08000 * 119.85849 * 179.73944 * 19 18 17 36 36 H 1.08002 * 119.93177 * 179.97438 * 20 19 18 37 37 H 1.08001 * 120.07011 * 179.97438 * 21 20 19 38 38 H 1.09002 * 109.34149 * 54.36523 * 22 11 10 39 39 H 1.08997 * 109.34167 * 294.84124 * 22 11 10 40 40 H 1.08998 * 117.49896 * 215.00219 * 23 9 7 41 41 H 1.08994 * 117.50031 * 0.02668 * 23 9 7 42 42 H 1.09001 * 117.50336 * 359.97086 * 24 9 7 43 43 H 1.09006 * 117.50200 * 144.97608 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0752 -1.1994 -0.1422 9 6 1.2641 -2.4918 0.1965 10 6 0.0812 -2.4360 1.1653 11 7 0.5263 -1.8802 2.4502 12 6 1.3405 -2.8561 3.1934 13 6 2.0345 -2.1266 4.3483 14 6 1.0258 -1.3129 5.1103 15 6 -0.1555 -1.0074 4.6206 16 6 -1.0702 -0.1899 5.4452 17 6 -2.2739 -0.7291 5.9003 18 6 -3.1211 0.0375 6.6738 19 6 -2.7838 1.3414 6.9900 20 6 -1.5942 1.8837 6.5376 21 6 -0.7363 1.1261 5.7669 22 6 -0.6187 -1.4497 3.2623 23 6 1.1475 -3.4285 -1.0076 24 6 2.0807 -3.7848 0.1523 25 1 -0.4850 0.8368 -0.0733 26 1 -0.3093 -3.4418 1.3202 27 1 -0.7014 -1.8028 0.7472 28 1 0.6987 -3.6445 3.5865 29 1 2.0884 -3.2898 2.5298 30 1 2.8079 -1.4679 3.9532 31 1 2.4890 -2.8584 5.0163 32 1 1.2837 -0.9611 6.0982 33 1 -2.5405 -1.7455 5.6506 34 1 -4.0514 -0.3798 7.0298 35 1 -3.4522 1.9388 7.5923 36 1 -1.3368 2.9024 6.7874 37 1 0.1919 1.5507 5.4139 38 1 -1.3163 -2.2801 3.3715 39 1 -1.1226 -0.6209 2.7652 40 1 0.2281 -4.0050 -1.1096 41 1 1.6067 -3.1063 -1.9422 42 1 3.1534 -3.6970 -0.0197 43 1 1.7754 -4.5957 0.8137 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602824892.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:32 Heat of formation + Delta-G solvation = 74.003996 kcal Electronic energy + Delta-G solvation = -22380.296900 eV Core-core repulsion = 19391.262097 eV Total energy + Delta-G solvation = -2989.034803 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.163 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.37283 -38.06909 -36.16589 -33.01747 -31.97720 -31.34854 -30.78979 -28.61274 -26.14715 -25.11798 -23.41880 -22.67535 -22.04654 -21.13530 -20.87558 -18.83936 -17.49881 -16.64263 -16.01234 -15.37870 -14.90215 -14.58922 -14.56585 -14.17611 -13.80575 -13.50764 -13.32270 -13.20556 -12.91964 -12.71558 -12.24062 -12.04208 -11.72083 -11.40301 -11.12330 -11.09148 -10.97326 -10.85667 -10.61245 -10.40923 -10.32781 -10.03979 -9.84948 -9.22493 -8.91258 -8.85825 -8.83425 -8.56021 -8.13017 -7.91826 -7.12880 -5.83701 -3.85350 1.36402 1.51034 2.57941 3.38058 3.45811 3.49988 3.89256 4.52733 4.72126 4.99102 5.03326 5.05215 5.21179 5.25917 5.36007 5.55690 5.64814 5.67087 5.72331 5.88674 5.95167 5.99163 6.10507 6.11674 6.15505 6.22610 6.39687 6.42748 6.53021 6.56533 6.58381 6.63379 6.66874 6.72782 6.74331 6.86978 6.91832 7.01115 7.10879 7.25301 7.31617 7.39899 7.62700 8.07394 8.21807 8.30053 8.62482 9.07746 9.74496 11.18873 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.016723 B = 0.005611 C = 0.004869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1673.949913 B = 4989.389857 C = 5748.966336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.090 3.910 3 Si 0.888 3.112 4 H -0.287 1.287 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.470 4.470 8 H 0.052 0.948 9 C 0.071 3.929 10 C 0.102 3.898 11 N -0.488 5.488 12 C 0.050 3.950 13 C -0.081 4.081 14 C -0.132 4.132 15 C -0.092 4.092 16 C -0.034 4.034 17 C -0.111 4.111 18 C -0.122 4.122 19 C -0.129 4.129 20 C -0.121 4.121 21 C -0.106 4.106 22 C 0.104 3.896 23 C -0.208 4.208 24 C -0.219 4.219 25 H 0.256 0.744 26 H -0.014 1.014 27 H 0.116 0.884 28 H 0.015 0.985 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.063 0.937 32 H 0.098 0.902 33 H 0.120 0.880 34 H 0.119 0.881 35 H 0.117 0.883 36 H 0.119 0.881 37 H 0.123 0.877 38 H 0.025 0.975 39 H 0.086 0.914 40 H 0.061 0.939 41 H 0.076 0.924 42 H 0.072 0.928 43 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.855 -0.928 12.477 13.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.112 4.112 3 Si 0.717 3.283 4 H -0.213 1.213 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.507 4.507 8 H 0.071 0.929 9 C 0.070 3.930 10 C -0.024 4.024 11 N -0.211 5.211 12 C -0.079 4.079 13 C -0.118 4.118 14 C -0.151 4.151 15 C -0.092 4.092 16 C -0.035 4.035 17 C -0.129 4.129 18 C -0.140 4.140 19 C -0.148 4.148 20 C -0.139 4.139 21 C -0.124 4.124 22 C -0.024 4.024 23 C -0.246 4.246 24 C -0.257 4.257 25 H 0.066 0.934 26 H 0.004 0.996 27 H 0.134 0.866 28 H 0.033 0.967 29 H 0.103 0.897 30 H 0.102 0.898 31 H 0.081 0.919 32 H 0.116 0.884 33 H 0.138 0.862 34 H 0.137 0.863 35 H 0.135 0.865 36 H 0.137 0.863 37 H 0.141 0.859 38 H 0.043 0.957 39 H 0.105 0.895 40 H 0.079 0.921 41 H 0.095 0.905 42 H 0.091 0.909 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -3.727 -0.365 12.441 12.992 hybrid contribution -0.048 0.177 0.152 0.238 sum -3.775 -0.188 12.592 13.147 Atomic orbital electron populations 1.69761 1.05959 1.26034 1.49788 1.24700 0.94519 0.98301 0.93720 0.86674 0.80126 0.84012 0.77515 1.21317 1.21334 1.20032 1.20251 0.92826 0.88906 1.48764 0.92933 1.18911 0.93468 0.88504 0.92121 1.21762 0.98971 0.94035 0.87676 1.62063 1.18510 1.38083 1.02441 1.22256 0.97563 0.92847 0.95197 1.20528 0.97302 0.98141 0.95858 1.22450 0.94316 0.99646 0.98650 1.19861 0.94659 0.99264 0.95414 1.19093 0.94348 0.93718 0.96313 1.21251 0.93700 0.99903 0.98005 1.21035 0.99428 0.94510 0.99028 1.21120 0.97112 0.95629 1.00890 1.21066 0.94716 0.99672 0.98444 1.21359 0.99874 0.93368 0.97827 1.20729 0.92751 0.99160 0.89727 1.22970 0.99318 1.07809 0.94544 1.22954 0.96870 1.02457 1.03398 0.93375 0.99587 0.86623 0.96722 0.89710 0.89809 0.91894 0.88387 0.86187 0.86322 0.86504 0.86266 0.85888 0.95710 0.89542 0.92074 0.90499 0.90897 0.91934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.82 10.71 55.43 0.59 -23.23 16 2 C 0.09 2.43 5.18 -17.82 -0.09 2.33 16 3 Si 0.89 21.46 29.55 -169.99 -5.02 16.44 16 4 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 7 C -0.47 -12.65 8.72 -34.44 -0.30 -12.95 16 8 H 0.05 1.44 7.83 -52.49 -0.41 1.03 16 9 C 0.07 1.72 1.64 -155.67 -0.26 1.47 16 10 C 0.10 2.38 4.03 -3.82 -0.02 2.37 16 11 N -0.49 -10.53 4.22 -236.03 -1.00 -11.53 16 12 C 0.05 0.94 5.43 -3.53 -0.02 0.92 16 13 C -0.08 -1.34 6.33 -27.94 -0.18 -1.52 16 14 C -0.13 -2.17 9.50 -36.32 -0.34 -2.51 16 15 C -0.09 -1.59 5.32 -102.80 -0.55 -2.13 16 16 C -0.03 -0.54 5.15 -105.01 -0.54 -1.08 16 17 C -0.11 -1.54 9.74 -39.20 -0.38 -1.92 16 18 C -0.12 -1.47 10.03 -39.64 -0.40 -1.87 16 19 C -0.13 -1.51 10.04 -39.50 -0.40 -1.91 16 20 C -0.12 -1.53 10.03 -39.64 -0.40 -1.92 16 21 C -0.11 -1.57 9.68 -39.19 -0.38 -1.95 16 22 C 0.10 2.04 5.22 -5.27 -0.03 2.02 16 23 C -0.21 -4.72 9.96 -26.69 -0.27 -4.99 16 24 C -0.22 -4.74 8.39 -26.69 -0.22 -4.97 16 25 H 0.26 6.78 8.32 -40.82 -0.34 6.44 16 26 H -0.01 -0.31 7.98 -51.93 -0.41 -0.72 16 27 H 0.12 2.97 5.87 -51.93 -0.30 2.66 16 28 H 0.01 0.27 8.07 -51.93 -0.42 -0.15 16 29 H 0.08 1.67 5.70 -51.93 -0.30 1.38 16 30 H 0.08 1.49 8.14 -51.93 -0.42 1.06 16 31 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.10 1.43 7.98 -52.49 -0.42 1.02 16 33 H 0.12 1.55 8.06 -52.48 -0.42 1.13 16 34 H 0.12 1.13 8.06 -52.48 -0.42 0.71 16 35 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 36 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 37 H 0.12 1.81 8.06 -52.49 -0.42 1.39 16 38 H 0.03 0.47 8.12 -51.93 -0.42 0.05 16 39 H 0.09 1.87 8.14 -51.93 -0.42 1.45 16 40 H 0.06 1.31 8.14 -51.93 -0.42 0.88 16 41 H 0.08 1.77 8.14 -51.93 -0.42 1.34 16 42 H 0.07 1.56 8.14 -51.93 -0.42 1.14 16 43 H 0.06 1.25 7.86 -51.93 -0.41 0.84 16 LS Contribution 347.05 15.07 5.23 5.23 Total: -1.00 -27.66 347.05 -11.84 -39.50 By element: Atomic # 1 Polarization: 11.08 SS G_CDS: -6.88 Total: 4.20 kcal Atomic # 6 Polarization: -25.86 SS G_CDS: -4.76 Total: -30.62 kcal Atomic # 7 Polarization: -34.35 SS G_CDS: -0.40 Total: -34.75 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -27.66 -11.84 -39.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602824892.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.505 kcal (2) G-P(sol) polarization free energy of solvation -27.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.501 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds