Wall clock time and date at job start Tue Mar 31 2020 07:06:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00345 * 2 1 4 4 H 1.48495 * 109.47241 * 270.00585 * 3 2 1 5 5 H 1.48500 * 109.46600 * 30.00515 * 3 2 1 6 6 H 1.48500 * 109.47331 * 150.00123 * 3 2 1 7 7 C 1.37875 * 120.00108 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00915 * 171.54078 * 7 2 1 9 9 C 1.50711 * 119.99883 * 351.53974 * 7 2 1 10 10 C 1.53001 * 115.54484 * 324.29240 * 9 7 2 11 11 N 1.46903 * 109.47031 * 270.43370 * 10 9 7 12 12 C 1.46897 * 110.99856 * 208.88594 * 11 10 9 13 13 C 1.53004 * 109.47257 * 159.15993 * 12 11 10 14 14 O 1.42904 * 109.46884 * 87.24344 * 13 12 11 15 15 C 1.42894 * 114.00026 * 180.23423 * 14 13 12 16 16 C 1.53004 * 109.47423 * 184.44740 * 15 14 13 17 17 O 1.42899 * 109.46686 * 64.40254 * 16 15 14 18 18 C 1.46893 * 111.00310 * 84.93209 * 11 10 9 19 19 C 1.53781 * 113.61723 * 194.82328 * 18 11 10 20 20 C 1.53778 * 87.08098 * 139.98183 * 19 18 11 21 21 C 1.53782 * 87.08190 * 334.56432 * 20 19 18 22 22 C 1.52993 * 117.51786 * 109.99252 * 9 7 2 23 23 C 1.52995 * 117.49826 * 178.62640 * 9 7 2 24 24 H 0.96998 * 119.99559 * 4.99847 * 1 2 3 25 25 H 1.09007 * 109.46849 * 150.43726 * 10 9 7 26 26 H 1.08997 * 109.47497 * 30.43336 * 10 9 7 27 27 H 1.09000 * 109.47576 * 279.15930 * 12 11 10 28 28 H 1.09002 * 109.47388 * 39.15969 * 12 11 10 29 29 H 1.09001 * 109.47359 * 207.23941 * 13 12 11 30 30 H 1.08996 * 109.46877 * 327.24521 * 13 12 11 31 31 H 1.09003 * 109.47503 * 304.45117 * 15 14 13 32 32 H 1.09004 * 109.47147 * 64.44746 * 15 14 13 33 33 H 1.08997 * 109.47425 * 184.40701 * 16 15 14 34 34 H 1.09007 * 109.46801 * 304.40851 * 16 15 14 35 35 H 0.96703 * 113.99696 * 179.97438 * 17 16 15 36 36 H 1.09007 * 112.90869 * 63.56336 * 18 11 10 37 37 H 1.08997 * 113.61293 * 254.52617 * 19 18 11 38 38 H 1.08997 * 113.61328 * 25.42717 * 19 18 11 39 39 H 1.09001 * 113.61868 * 89.11708 * 20 19 18 40 40 H 1.09002 * 113.61299 * 220.02299 * 20 19 18 41 41 H 1.09000 * 113.61778 * 270.88781 * 21 20 19 42 42 H 1.08999 * 113.68712 * 139.99352 * 21 20 19 43 43 H 1.09006 * 117.49984 * 214.97087 * 22 9 7 44 44 H 1.08999 * 117.50420 * 359.97438 * 22 9 7 45 45 H 1.08993 * 117.50093 * 359.96858 * 23 9 7 46 46 H 1.09000 * 117.49818 * 144.97657 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4467 2.6525 0.7002 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0757 -1.1992 -0.1381 9 6 1.2633 -2.4922 0.1909 10 6 0.0760 -2.4381 1.1544 11 7 0.5373 -2.7347 2.5172 12 6 -0.5314 -3.3551 3.3114 13 6 0.0829 -4.1079 4.4934 14 8 0.2473 -3.2124 5.5948 15 6 0.8218 -3.8173 6.7549 16 6 0.8484 -2.8022 7.8994 17 8 -0.4903 -2.4577 8.2616 18 6 1.0476 -1.5247 3.1753 19 6 1.8682 -1.8126 4.4436 20 6 2.8206 -0.6953 3.9862 21 6 2.3462 -0.9857 2.5524 22 6 1.1527 -3.4275 -1.0148 23 6 2.0802 -3.7851 0.1484 24 1 -0.4849 0.8369 -0.0732 25 1 -0.6691 -3.1752 0.8545 26 1 -0.3672 -1.4426 1.1295 27 1 -1.2036 -2.5817 3.6831 28 1 -1.0899 -4.0526 2.6871 29 1 -0.5760 -4.9257 4.7853 30 1 1.0538 -4.5093 4.2033 31 1 0.2242 -4.6803 7.0485 32 1 1.8390 -4.1390 6.5310 33 1 1.3570 -3.2375 8.7595 34 1 1.3799 -1.9063 7.5781 35 1 -0.5499 -1.8168 8.9832 36 1 0.2811 -0.7622 3.3149 37 1 1.3382 -1.5832 5.3680 38 1 2.3269 -2.8014 4.4517 39 1 2.5388 0.2938 4.3474 40 1 3.8733 -0.9237 4.1523 41 1 2.9357 -1.7484 2.0435 42 1 2.2019 -0.0896 1.9490 43 1 0.2341 -4.0045 -1.1216 44 1 1.6157 -3.1040 -1.9470 45 1 3.1537 -3.6968 -0.0186 46 1 1.7720 -4.5971 0.8070 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602885341.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:55 Heat of formation + Delta-G solvation = -23.257997 kcal Electronic energy + Delta-G solvation = -24702.306451 eV Core-core repulsion = 21401.745131 eV Total energy + Delta-G solvation = -3300.561320 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.05339 -37.74779 -36.35089 -36.03338 -33.90863 -32.23079 -30.08468 -28.07215 -26.07518 -24.91210 -24.03481 -23.00238 -22.41869 -21.04690 -20.50948 -18.91017 -18.42790 -17.67957 -16.57843 -16.11168 -15.57659 -15.09217 -14.74994 -14.52201 -14.24388 -14.08183 -13.77214 -13.55508 -13.07972 -12.65171 -12.16901 -11.87315 -11.80935 -11.61315 -11.42315 -11.17592 -10.99066 -10.85481 -10.78381 -10.65670 -10.42835 -10.20665 -10.14068 -10.09211 -9.80167 -9.45393 -9.31995 -9.04298 -8.87076 -8.64190 -8.45081 -7.99195 -7.18920 -5.90449 -3.94362 3.26213 3.35211 3.38865 3.90192 4.19188 4.37068 4.83545 5.04953 5.09427 5.15223 5.33649 5.54163 5.57106 5.62902 5.69756 5.70820 5.77722 5.78445 5.90818 5.95593 6.07522 6.17676 6.34449 6.41395 6.51462 6.55717 6.62664 6.76054 6.82244 6.90934 6.92586 7.01458 7.11010 7.31960 7.38115 7.44389 7.49364 7.51024 7.57283 7.61060 7.69044 8.13492 8.31990 8.37951 8.61751 8.94345 9.54787 11.00095 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.019195 B = 0.005948 C = 0.005124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.337387 B = 4706.268520 C = 5463.437551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.068 3.932 3 Si 0.878 3.122 4 H -0.282 1.282 5 H -0.285 1.285 6 H -0.267 1.267 7 C -0.462 4.462 8 H 0.058 0.942 9 C 0.067 3.933 10 C 0.064 3.936 11 N -0.521 5.521 12 C 0.057 3.943 13 C 0.068 3.932 14 O -0.366 6.366 15 C 0.061 3.939 16 C 0.078 3.922 17 O -0.566 6.566 18 C 0.081 3.919 19 C -0.111 4.111 20 C -0.175 4.175 21 C -0.096 4.096 22 C -0.212 4.212 23 C -0.192 4.192 24 H 0.260 0.740 25 H 0.026 0.974 26 H 0.119 0.881 27 H 0.038 0.962 28 H 0.073 0.927 29 H 0.038 0.962 30 H 0.059 0.941 31 H 0.048 0.952 32 H 0.060 0.940 33 H 0.054 0.946 34 H 0.056 0.944 35 H 0.375 0.625 36 H 0.045 0.955 37 H 0.068 0.932 38 H 0.070 0.930 39 H 0.060 0.940 40 H 0.052 0.948 41 H 0.094 0.906 42 H 0.076 0.924 43 H 0.059 0.941 44 H 0.072 0.928 45 H 0.066 0.934 46 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.240 -5.097 13.110 14.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.132 4.132 3 Si 0.705 3.295 4 H -0.209 1.209 5 H -0.210 1.210 6 H -0.192 1.192 7 C -0.499 4.499 8 H 0.076 0.924 9 C 0.067 3.933 10 C -0.062 4.062 11 N -0.246 5.246 12 C -0.072 4.072 13 C -0.009 4.009 14 O -0.285 6.285 15 C -0.017 4.017 16 C 0.000 4.000 17 O -0.370 6.370 18 C -0.027 4.027 19 C -0.149 4.149 20 C -0.213 4.213 21 C -0.133 4.133 22 C -0.250 4.250 23 C -0.229 4.229 24 H 0.071 0.929 25 H 0.044 0.956 26 H 0.136 0.864 27 H 0.056 0.944 28 H 0.092 0.908 29 H 0.056 0.944 30 H 0.077 0.923 31 H 0.066 0.934 32 H 0.078 0.922 33 H 0.072 0.928 34 H 0.074 0.926 35 H 0.221 0.779 36 H 0.062 0.938 37 H 0.086 0.914 38 H 0.089 0.911 39 H 0.079 0.921 40 H 0.071 0.929 41 H 0.113 0.887 42 H 0.094 0.906 43 H 0.077 0.923 44 H 0.090 0.910 45 H 0.084 0.916 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 1.268 -5.517 12.636 13.846 hybrid contribution -0.011 1.375 0.377 1.426 sum 1.256 -4.142 13.014 13.715 Atomic orbital electron populations 1.69562 1.05813 1.26272 1.50477 1.24883 0.94720 0.98589 0.94976 0.86861 0.80520 0.83927 0.78155 1.20878 1.21030 1.19213 1.20526 0.93322 0.89202 1.46896 0.92399 1.18867 0.94174 0.88287 0.92015 1.22298 0.95294 1.03732 0.84839 1.62268 1.32750 1.26823 1.02711 1.22033 0.93548 0.98244 0.93383 1.22643 0.99889 0.91779 0.86561 1.88168 1.83272 1.35706 1.21395 1.22397 0.97746 0.95270 0.86244 1.22241 0.84090 0.98295 0.95386 1.86580 1.26919 1.65827 1.57723 1.22807 0.95334 0.90304 0.94292 1.23059 0.96789 0.97474 0.97582 1.23096 0.98452 0.98343 1.01394 1.23345 0.95353 1.02046 0.92562 1.23018 0.99746 1.07905 0.94344 1.22629 0.95893 1.02416 1.01986 0.92896 0.95564 0.86440 0.94395 0.90820 0.94399 0.92272 0.93405 0.92182 0.92825 0.92564 0.77872 0.93762 0.91359 0.91110 0.92088 0.92924 0.88715 0.90588 0.92251 0.90963 0.91551 0.91265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.70 10.45 55.43 0.58 -23.13 16 2 C 0.07 1.77 3.97 -17.82 -0.07 1.70 16 3 Si 0.88 20.51 27.65 -169.99 -4.70 15.81 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 7 C -0.46 -11.90 5.31 -34.44 -0.18 -12.08 16 8 H 0.06 1.52 7.81 -52.49 -0.41 1.11 16 9 C 0.07 1.63 1.31 -155.66 -0.20 1.43 16 10 C 0.06 1.51 4.83 -3.82 -0.02 1.49 16 11 N -0.52 -10.72 4.11 -225.67 -0.93 -11.65 16 12 C 0.06 1.02 5.44 -3.82 -0.02 1.00 16 13 C 0.07 1.04 5.34 37.16 0.20 1.24 16 14 O -0.37 -5.70 6.10 -40.70 -0.25 -5.94 16 15 C 0.06 0.73 6.11 37.16 0.23 0.96 16 16 C 0.08 0.82 7.35 37.16 0.27 1.09 16 17 O -0.57 -6.71 13.62 -40.70 -0.55 -7.26 16 18 C 0.08 1.70 2.89 -66.90 -0.19 1.50 16 19 C -0.11 -1.98 4.99 -25.92 -0.13 -2.11 16 20 C -0.17 -3.19 8.08 -25.92 -0.21 -3.40 16 21 C -0.10 -2.07 4.90 -25.92 -0.13 -2.20 16 22 C -0.21 -4.87 9.88 -26.73 -0.26 -5.14 16 23 C -0.19 -4.23 9.75 -26.73 -0.26 -4.49 16 24 H 0.26 6.79 8.32 -40.82 -0.34 6.45 16 25 H 0.03 0.60 7.15 -51.92 -0.37 0.23 16 26 H 0.12 3.09 4.52 -51.93 -0.23 2.85 16 27 H 0.04 0.73 7.93 -51.93 -0.41 0.32 16 28 H 0.07 1.25 7.49 -51.93 -0.39 0.86 16 29 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.93 7.45 -51.93 -0.39 0.54 16 31 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.06 0.61 7.54 -51.92 -0.39 0.22 16 35 H 0.38 2.59 9.12 45.56 0.42 3.01 16 36 H 0.04 1.03 8.14 -51.93 -0.42 0.60 16 37 H 0.07 1.18 5.54 -51.93 -0.29 0.89 16 38 H 0.07 1.25 6.99 -51.93 -0.36 0.88 16 39 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 40 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.09 2.20 6.64 -51.93 -0.34 1.85 16 42 H 0.08 1.80 3.31 -51.93 -0.17 1.63 16 43 H 0.06 1.30 8.03 -51.93 -0.42 0.89 16 44 H 0.07 1.68 8.14 -51.93 -0.42 1.26 16 45 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 46 H 0.07 1.47 8.14 -51.93 -0.42 1.04 16 LS Contribution 342.66 15.07 5.16 5.16 Total: -1.00 -28.25 342.66 -8.80 -37.05 By element: Atomic # 1 Polarization: 16.09 SS G_CDS: -7.13 Total: 8.96 kcal Atomic # 6 Polarization: -18.03 SS G_CDS: -0.98 Total: -19.01 kcal Atomic # 7 Polarization: -34.43 SS G_CDS: -0.35 Total: -34.77 kcal Atomic # 8 Polarization: -12.40 SS G_CDS: -0.80 Total: -13.20 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -4.70 Total: 15.81 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -28.25 -8.80 -37.05 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602885341.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.787 kcal (2) G-P(sol) polarization free energy of solvation -28.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds