Wall clock time and date at job start Tue Mar 31 2020 06:53:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 119.99879 * 2 1 4 4 H 1.48498 * 109.47094 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46904 * 299.99870 * 3 2 1 6 6 H 1.48497 * 109.46927 * 60.00090 * 3 2 1 7 7 C 1.37879 * 120.00355 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00582 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99808 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47161 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47231 * 179.97438 * 10 9 7 12 12 N 1.46896 * 109.47184 * 179.97438 * 11 10 9 13 13 C 1.46848 * 110.99762 * 170.00046 * 12 11 10 14 14 C 1.53032 * 109.53384 * 174.23161 * 13 12 11 15 15 C 1.53230 * 109.24141 * 59.34137 * 14 13 12 16 16 C 1.52716 * 109.35786 * 61.55680 * 15 14 13 17 17 C 1.53078 * 109.90105 * 191.40125 * 16 15 14 18 18 S 1.81753 * 108.84195 * 296.82271 * 17 16 15 19 19 C 1.81751 * 102.22129 * 53.17403 * 18 17 16 20 20 C 1.52712 * 109.38131 * 182.63109 * 15 14 13 21 21 C 1.53243 * 108.95115 * 302.09692 * 15 14 13 22 22 C 1.46843 * 110.99919 * 45.80073 * 12 11 10 23 23 H 0.97001 * 120.00204 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.47327 * 59.99633 * 9 7 2 25 25 H 1.09005 * 109.47160 * 299.99867 * 9 7 2 26 26 H 1.08997 * 109.47149 * 60.00273 * 10 9 7 27 27 H 1.08996 * 109.46920 * 300.00035 * 10 9 7 28 28 H 1.09006 * 109.46978 * 59.99948 * 11 10 9 29 29 H 1.08996 * 109.46920 * 300.00313 * 11 10 9 30 30 H 1.08999 * 109.46359 * 54.20841 * 13 12 11 31 31 H 1.09003 * 109.45226 * 294.23943 * 13 12 11 32 32 H 1.09000 * 109.50355 * 299.41336 * 14 13 12 33 33 H 1.09000 * 109.54651 * 179.29930 * 14 13 12 34 34 H 1.09000 * 109.40168 * 311.53672 * 16 15 14 35 35 H 1.09001 * 109.39889 * 71.26543 * 16 15 14 36 36 H 1.08999 * 109.58010 * 56.62720 * 17 16 15 37 37 H 1.09003 * 109.58009 * 177.01698 * 17 16 15 38 38 H 1.09004 * 109.57034 * 187.00408 * 19 18 17 39 39 H 1.08998 * 109.57783 * 66.61688 * 19 18 17 40 40 H 1.08999 * 109.40525 * 288.73650 * 20 15 14 41 41 H 1.09007 * 109.39947 * 48.47790 * 20 15 14 42 42 H 1.08998 * 109.50983 * 177.82609 * 21 15 14 43 43 H 1.08998 * 109.50630 * 297.96467 * 21 15 14 44 44 H 1.09001 * 109.45488 * 305.77418 * 22 12 11 45 45 H 1.08999 * 109.45985 * 65.74631 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 6 1.4804 -4.9871 0.0001 12 7 2.4350 -6.1036 -0.0005 13 6 1.7509 -7.3809 0.2381 14 6 2.7487 -8.5315 0.0884 15 6 3.8870 -8.3474 1.0976 16 6 3.3184 -8.3850 2.5144 17 6 4.3813 -7.9241 3.5149 18 16 5.7737 -9.0915 3.4714 19 6 6.1855 -9.1335 1.7017 20 6 4.9180 -9.4577 0.9068 21 6 4.5532 -6.9890 0.8539 22 6 3.5041 -5.8824 0.9815 23 1 -0.4850 0.8400 0.0004 24 1 0.6240 -2.5567 -0.8902 25 1 0.6248 -2.5571 0.8897 26 1 2.8720 -3.6043 0.8894 27 1 2.8720 -3.6043 -0.8905 28 1 0.8534 -5.0451 -0.8897 29 1 0.8540 -5.0446 0.8903 30 1 0.9453 -7.5023 -0.4860 31 1 1.3370 -7.3882 1.2465 32 1 3.1553 -8.5314 -0.9229 33 1 2.2440 -9.4789 0.2777 34 1 2.4534 -7.7245 2.5751 35 1 3.0122 -9.4032 2.7547 36 1 4.7312 -6.9282 3.2433 37 1 3.9542 -7.9024 4.5175 38 1 6.9372 -9.9017 1.5198 39 1 6.5714 -8.1619 1.3933 40 1 4.5022 -10.4022 1.2576 41 1 5.1661 -9.5435 -0.1512 42 1 5.3397 -6.8317 1.5920 43 1 4.9834 -6.9690 -0.1474 44 1 3.9721 -4.9154 0.7971 45 1 3.0825 -5.8961 1.9866 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602944853.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:14 Heat of formation + Delta-G solvation = -21.014398 kcal Electronic energy + Delta-G solvation = -21100.040016 eV Core-core repulsion = 18242.328857 eV Total energy + Delta-G solvation = -2857.711159 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.167 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.40697 -36.70837 -33.76031 -32.07157 -31.83487 -30.80902 -29.82409 -26.73059 -25.00124 -23.74993 -23.39427 -22.38827 -21.06758 -19.71904 -18.39073 -16.99789 -16.44127 -15.82802 -15.36954 -14.86094 -14.68946 -14.56573 -14.41368 -14.10935 -13.97076 -13.46737 -13.31330 -12.90378 -12.54198 -12.24170 -12.16667 -12.01614 -11.72305 -11.54109 -11.43260 -11.24419 -11.17130 -10.86859 -10.67051 -10.53306 -10.40520 -10.27644 -10.08842 -9.84192 -9.61466 -9.33890 -9.03519 -8.35152 -8.02053 -7.85060 -6.00246 -4.02402 1.58859 2.33134 3.30728 3.38197 3.42443 4.10554 4.28658 4.43495 4.45414 4.48039 4.73624 4.85469 4.94699 5.08304 5.13057 5.18879 5.24424 5.32914 5.35736 5.41631 5.46577 5.54707 5.64157 5.65411 5.69808 5.71651 5.80979 5.83931 5.91601 5.98222 6.03684 6.14143 6.19044 6.28750 6.30138 6.69050 6.77121 7.08160 7.39786 7.40948 7.67489 7.82034 7.99930 8.43112 9.04967 9.61761 11.11218 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.026721 B = 0.003351 C = 0.003152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.608101 B = 8352.915489 C = 8880.821658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.518 4.518 8 H 0.055 0.945 9 C 0.022 3.978 10 C -0.111 4.111 11 C 0.056 3.944 12 N -0.536 5.536 13 C 0.052 3.948 14 C -0.101 4.101 15 C -0.065 4.065 16 C -0.115 4.115 17 C -0.082 4.082 18 S -0.278 6.278 19 C -0.082 4.082 20 C -0.109 4.109 21 C -0.113 4.113 22 C 0.048 3.952 23 H 0.260 0.740 24 H 0.016 0.984 25 H 0.013 0.987 26 H 0.049 0.951 27 H 0.055 0.945 28 H 0.071 0.929 29 H 0.027 0.973 30 H 0.072 0.928 31 H 0.032 0.968 32 H 0.072 0.928 33 H 0.064 0.936 34 H 0.078 0.922 35 H 0.072 0.928 36 H 0.091 0.909 37 H 0.100 0.900 38 H 0.100 0.900 39 H 0.089 0.911 40 H 0.073 0.927 41 H 0.075 0.925 42 H 0.066 0.934 43 H 0.073 0.927 44 H 0.088 0.912 45 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.554 -21.119 3.449 23.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.719 3.281 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.557 4.557 8 H 0.073 0.927 9 C -0.016 4.016 10 C -0.149 4.149 11 C -0.071 4.071 12 N -0.261 5.261 13 C -0.076 4.076 14 C -0.138 4.138 15 C -0.065 4.065 16 C -0.153 4.153 17 C -0.230 4.230 18 S -0.052 6.052 19 C -0.230 4.230 20 C -0.148 4.148 21 C -0.151 4.151 22 C -0.080 4.080 23 H 0.069 0.931 24 H 0.034 0.966 25 H 0.031 0.969 26 H 0.068 0.932 27 H 0.074 0.926 28 H 0.089 0.911 29 H 0.045 0.955 30 H 0.091 0.909 31 H 0.050 0.950 32 H 0.091 0.909 33 H 0.082 0.918 34 H 0.097 0.903 35 H 0.091 0.909 36 H 0.109 0.891 37 H 0.119 0.881 38 H 0.118 0.882 39 H 0.108 0.892 40 H 0.092 0.908 41 H 0.093 0.907 42 H 0.085 0.915 43 H 0.091 0.909 44 H 0.106 0.894 45 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 9.112 -21.573 3.841 23.731 hybrid contribution -0.581 1.690 -0.132 1.791 sum 8.531 -19.883 3.708 21.952 Atomic orbital electron populations 1.69973 1.06064 1.26456 1.51064 1.25028 0.94840 0.99265 0.95372 0.86552 0.80146 0.83840 0.77578 1.19726 1.20994 1.21035 1.21280 0.93043 0.91047 1.50288 0.92675 1.19072 0.94007 0.91378 0.97111 1.21788 0.99325 0.93137 1.00670 1.22280 0.94026 0.90599 1.00177 1.62032 1.12729 1.02014 1.49337 1.22116 0.96161 0.89838 0.99497 1.21610 0.95599 0.97467 0.99172 1.20639 0.95580 0.95370 0.94939 1.21886 0.97831 1.02367 0.93262 1.23560 0.95959 1.00178 1.03273 1.86819 1.44357 1.61440 1.12592 1.23523 1.00750 1.05751 0.92996 1.21775 0.93863 0.98783 1.00331 1.21891 0.97640 0.93321 1.02244 1.22213 0.92966 0.99313 0.93467 0.93083 0.96565 0.96858 0.93235 0.92580 0.91098 0.95474 0.90946 0.94956 0.90892 0.91757 0.90349 0.90887 0.89065 0.88114 0.88153 0.89248 0.90840 0.90689 0.91549 0.90878 0.89423 0.95073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.08 13.29 55.43 0.74 -26.34 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.74 29.54 -169.99 -5.02 16.72 16 4 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 7 C -0.52 -14.75 9.11 -34.44 -0.31 -15.07 16 8 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 9 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 10 C -0.11 -2.29 4.40 -26.73 -0.12 -2.41 16 11 C 0.06 0.97 5.27 -3.83 -0.02 0.95 16 12 N -0.54 -7.74 4.81 -234.69 -1.13 -8.87 16 13 C 0.05 0.62 5.18 -3.84 -0.02 0.60 16 14 C -0.10 -0.97 4.84 -26.60 -0.13 -1.10 16 15 C -0.06 -0.60 0.51 -154.56 -0.08 -0.68 16 16 C -0.11 -1.07 4.03 -26.84 -0.11 -1.18 16 17 C -0.08 -0.78 5.91 37.20 0.22 -0.56 16 18 S -0.28 -2.80 22.33 -107.50 -2.40 -5.20 16 19 C -0.08 -0.68 6.00 37.20 0.22 -0.46 16 20 C -0.11 -0.87 4.71 -26.83 -0.13 -1.00 16 21 C -0.11 -1.21 3.58 -26.60 -0.10 -1.31 16 22 C 0.05 0.64 4.46 -3.85 -0.02 0.63 16 23 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 24 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.05 0.99 6.21 -51.93 -0.32 0.67 16 27 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 28 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 29 H 0.03 0.47 8.08 -51.93 -0.42 0.06 16 30 H 0.07 0.85 8.12 -51.93 -0.42 0.43 16 31 H 0.03 0.39 6.24 -51.93 -0.32 0.06 16 32 H 0.07 0.74 8.13 -51.93 -0.42 0.32 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.08 0.80 4.92 -51.93 -0.26 0.55 16 35 H 0.07 0.66 8.04 -51.93 -0.42 0.24 16 36 H 0.09 0.91 5.74 -51.93 -0.30 0.62 16 37 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.09 0.75 6.19 -51.93 -0.32 0.43 16 40 H 0.07 0.59 8.04 -51.93 -0.42 0.17 16 41 H 0.07 0.56 8.09 -51.92 -0.42 0.14 16 42 H 0.07 0.68 4.52 -51.93 -0.23 0.44 16 43 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.09 1.32 5.82 -51.93 -0.30 1.01 16 45 H 0.03 0.42 6.41 -51.93 -0.33 0.09 16 LS Contribution 335.45 15.07 5.06 5.06 Total: -1.00 -29.67 335.45 -11.41 -41.08 By element: Atomic # 1 Polarization: 5.03 SS G_CDS: -7.83 Total: -2.81 kcal Atomic # 6 Polarization: -18.82 SS G_CDS: -0.82 Total: -19.63 kcal Atomic # 7 Polarization: -34.82 SS G_CDS: -0.39 Total: -35.21 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Atomic # 16 Polarization: -2.80 SS G_CDS: -2.40 Total: -5.20 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -29.67 -11.41 -41.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602944853.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.066 kcal (2) G-P(sol) polarization free energy of solvation -29.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds