Wall clock time and date at job start Tue Mar 31 2020 05:26:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42897 * 113.99823 * 2 1 4 4 C 1.53006 * 109.47183 * 179.97438 * 3 2 1 5 5 C 1.50703 * 109.87360 * 295.43646 * 4 3 2 6 6 O 1.20824 * 120.00150 * 23.96772 * 5 4 3 7 7 O 1.34235 * 119.99475 * 203.96700 * 5 4 3 8 8 C 1.54312 * 110.02243 * 56.55079 * 4 3 2 9 9 C 1.55146 * 103.01840 * 141.76656 * 8 4 3 10 10 C 1.54908 * 101.65075 * 324.34732 * 9 8 4 11 11 N 1.47435 * 109.88848 * 174.40524 * 4 3 2 12 12 C 1.46903 * 111.00292 * 3.68650 * 11 4 3 13 13 C 1.53005 * 109.47216 * 171.76575 * 12 11 4 14 14 C 1.50698 * 115.54917 * 325.58474 * 13 12 11 15 15 H 1.08004 * 120.00091 * 0.02562 * 14 13 12 16 16 C 1.37880 * 119.99846 * 180.27425 * 14 13 12 17 17 N 1.31514 * 119.99834 * 359.72500 * 16 14 13 18 18 Si 1.86806 * 119.99785 * 179.72558 * 16 14 13 19 19 H 1.48496 * 109.47234 * 0.02562 * 18 16 14 20 20 H 1.48498 * 109.46840 * 120.00310 * 18 16 14 21 21 H 1.48502 * 109.46904 * 239.99915 * 18 16 14 22 22 C 1.52994 * 117.49569 * 111.25288 * 13 12 11 23 23 C 1.52994 * 117.49981 * 179.91403 * 13 12 11 24 24 H 1.08999 * 109.47577 * 300.00485 * 1 2 3 25 25 H 1.09003 * 109.47071 * 60.00452 * 1 2 3 26 26 H 1.08998 * 109.47349 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47575 * 59.99608 * 3 2 1 28 28 H 1.09000 * 109.47227 * 299.99638 * 3 2 1 29 29 H 0.96695 * 116.99822 * 180.02562 * 7 5 4 30 30 H 1.09002 * 110.70913 * 260.14803 * 8 4 3 31 31 H 1.09001 * 110.70959 * 23.38654 * 8 4 3 32 32 H 1.08996 * 110.98625 * 82.43814 * 9 8 4 33 33 H 1.08999 * 110.99323 * 206.21363 * 9 8 4 34 34 H 1.08999 * 110.37270 * 278.23645 * 10 9 8 35 35 H 1.09005 * 110.36776 * 155.89732 * 10 9 8 36 36 H 1.08998 * 109.46917 * 51.76935 * 12 11 4 37 37 H 1.08997 * 109.47242 * 291.76630 * 12 11 4 38 38 H 0.96996 * 119.99418 * 180.02562 * 17 16 14 39 39 H 1.09004 * 117.49738 * 214.99965 * 22 13 12 40 40 H 1.08995 * 117.50277 * 0.02562 * 22 13 12 41 41 H 1.09005 * 117.49930 * 359.97333 * 23 13 12 42 42 H 1.09005 * 117.50190 * 144.97365 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 6 3.9976 0.5377 1.2808 6 8 3.2452 -0.1726 1.9047 7 8 5.2453 0.7504 1.7279 8 6 3.9996 0.3461 -1.2087 9 6 5.2962 1.0696 -1.6587 10 6 4.9405 2.5513 -1.3800 11 7 4.1444 2.5206 -0.1345 12 6 3.1162 3.5697 -0.1410 13 6 3.7880 4.9428 -0.0754 14 6 5.0521 5.0095 0.7423 15 1 5.4251 4.1227 1.2332 16 6 5.7297 6.2037 0.8681 17 7 5.2757 7.2834 0.2699 18 14 7.2924 6.2880 1.8880 19 1 7.5886 4.9465 2.4517 20 1 8.4219 6.7234 1.0279 21 1 7.1093 7.2611 2.9947 22 6 3.7030 5.8309 -1.3183 23 6 2.8801 6.1742 -0.0741 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.6885 1.8465 0.8899 28 1 1.6886 1.8464 -0.8900 29 1 5.4963 0.3138 2.5534 30 1 4.2151 -0.6789 -0.9071 31 1 3.2519 0.3665 -2.0016 32 1 6.1486 0.7529 -1.0578 33 1 5.4866 0.9060 -2.7194 34 1 4.3484 2.9599 -2.1989 35 1 5.8474 3.1387 -1.2364 36 1 2.4628 3.4434 0.7222 37 1 2.5280 3.4964 -1.0558 38 1 5.7526 8.1234 0.3581 39 1 4.5614 6.4635 -1.5445 40 1 3.1681 5.4373 -2.1826 41 1 1.8041 6.0062 -0.1204 42 1 3.1968 7.0325 0.5185 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000692325413.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:27 Heat of formation + Delta-G solvation = -78.812695 kcal Electronic energy + Delta-G solvation = -24405.501747 eV Core-core repulsion = 20966.698300 eV Total energy + Delta-G solvation = -3438.803447 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.62941 -38.57707 -37.31169 -36.13406 -35.57028 -32.01867 -31.11767 -30.48806 -26.76861 -25.92870 -25.26494 -24.49183 -22.98102 -21.12823 -20.57362 -19.46137 -18.77394 -17.59533 -16.79866 -16.27966 -15.97271 -15.56887 -15.08993 -14.94895 -14.68787 -14.36598 -14.00157 -13.54267 -13.34251 -13.05384 -12.79317 -12.32045 -12.15002 -11.87861 -11.40833 -11.30630 -11.06148 -11.03121 -10.90191 -10.81940 -10.70509 -10.62585 -10.47558 -10.10877 -10.05325 -9.95885 -9.54317 -9.39351 -8.75481 -8.32940 -7.99249 -7.76388 -5.86959 -3.88480 2.57509 3.33528 3.42477 3.42882 3.49137 3.74661 4.29170 4.49185 4.68479 4.86815 5.00238 5.14686 5.25397 5.32896 5.39063 5.46014 5.51563 5.65558 5.66387 5.78509 5.82276 5.90518 5.97398 6.07796 6.14266 6.23826 6.44856 6.45493 6.68084 6.70326 6.89406 6.99330 7.13059 7.17596 7.27192 7.45830 7.57857 7.83869 8.14168 8.24302 8.40301 8.63594 9.14504 9.66415 11.10030 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.018630 B = 0.006327 C = 0.005657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1502.565533 B = 4424.091200 C = 4948.608957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.375 6.375 3 C 0.064 3.936 4 C 0.107 3.893 5 C 0.504 3.496 6 O -0.517 6.517 7 O -0.491 6.491 8 C -0.114 4.114 9 C -0.134 4.134 10 C 0.059 3.941 11 N -0.476 5.476 12 C 0.087 3.913 13 C 0.023 3.977 14 C -0.448 4.448 15 H 0.078 0.922 16 C 0.050 3.950 17 N -0.888 5.888 18 Si 0.893 3.107 19 H -0.271 1.271 20 H -0.288 1.288 21 H -0.288 1.288 22 C -0.191 4.191 23 C -0.190 4.190 24 H 0.040 0.960 25 H 0.037 0.963 26 H 0.083 0.917 27 H 0.062 0.938 28 H 0.065 0.935 29 H 0.397 0.603 30 H 0.074 0.926 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.074 0.926 34 H 0.045 0.955 35 H 0.099 0.901 36 H 0.063 0.937 37 H 0.021 0.979 38 H 0.255 0.745 39 H 0.109 0.891 40 H 0.036 0.964 41 H 0.038 0.962 42 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.151 -12.139 -3.362 13.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.293 6.293 3 C -0.014 4.014 4 C 0.015 3.985 5 C 0.345 3.655 6 O -0.404 6.404 7 O -0.299 6.299 8 C -0.153 4.153 9 C -0.172 4.172 10 C -0.068 4.068 11 N -0.201 5.201 12 C -0.039 4.039 13 C 0.023 3.977 14 C -0.485 4.485 15 H 0.096 0.904 16 C -0.149 4.149 17 N -0.527 5.527 18 Si 0.722 3.278 19 H -0.195 1.195 20 H -0.214 1.214 21 H -0.215 1.215 22 C -0.228 4.228 23 C -0.228 4.228 24 H 0.059 0.941 25 H 0.056 0.944 26 H 0.102 0.898 27 H 0.080 0.920 28 H 0.083 0.917 29 H 0.253 0.747 30 H 0.093 0.907 31 H 0.099 0.901 32 H 0.097 0.903 33 H 0.093 0.907 34 H 0.063 0.937 35 H 0.118 0.882 36 H 0.082 0.918 37 H 0.039 0.961 38 H 0.065 0.935 39 H 0.128 0.872 40 H 0.055 0.945 41 H 0.056 0.944 42 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -3.980 -12.023 -3.136 13.047 hybrid contribution 0.054 0.169 0.422 0.458 sum -3.926 -11.853 -2.714 12.778 Atomic orbital electron populations 1.22688 0.81435 1.02416 0.99745 1.87942 1.19160 1.26873 1.95302 1.22958 0.91464 0.85514 1.01475 1.21464 0.92048 0.93376 0.91660 1.23138 0.79172 0.77338 0.85819 1.90695 1.55510 1.37037 1.57179 1.84712 1.32247 1.69462 1.43506 1.22669 0.98221 0.98904 0.95486 1.22853 0.97314 0.95909 1.01173 1.23003 0.99228 0.95237 0.89332 1.63624 1.21373 0.98038 1.37038 1.21990 0.91885 0.92056 0.98017 1.18952 0.96170 0.84864 0.97743 1.20753 1.05086 0.95135 1.27574 0.90354 1.25056 0.97830 0.95928 0.96108 1.70034 1.39025 0.99981 1.43686 0.86503 0.83322 0.78036 0.79980 1.19529 1.21408 1.21493 1.22896 1.02971 1.07262 0.89711 1.22837 0.92090 1.04280 1.03600 0.94141 0.94448 0.89816 0.91994 0.91667 0.74661 0.90723 0.90083 0.90251 0.90744 0.93690 0.88232 0.91840 0.96124 0.93509 0.87238 0.94530 0.94369 0.87055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 11.01 101.05 1.11 1.51 16 2 O -0.38 -5.73 9.06 -54.35 -0.49 -6.22 16 3 C 0.06 0.99 3.17 37.16 0.12 1.10 16 4 C 0.11 1.74 0.93 -131.77 -0.12 1.62 16 5 C 0.50 8.74 7.04 36.01 0.25 8.99 16 6 O -0.52 -9.85 16.09 -25.24 -0.41 -10.26 16 7 O -0.49 -7.74 13.15 -39.27 -0.52 -8.26 16 8 C -0.11 -1.58 5.60 -24.91 -0.14 -1.72 16 9 C -0.13 -1.81 7.08 -24.59 -0.17 -1.99 16 10 C 0.06 1.00 5.91 -2.30 -0.01 0.98 16 11 N -0.48 -8.74 3.47 -217.07 -0.75 -9.49 16 12 C 0.09 1.72 3.80 -3.82 -0.01 1.71 16 13 C 0.02 0.55 1.93 -155.66 -0.30 0.25 16 14 C -0.45 -11.68 8.26 -34.44 -0.28 -11.97 16 15 H 0.08 2.09 7.22 -52.48 -0.38 1.71 16 16 C 0.05 1.34 5.28 -17.82 -0.09 1.25 16 17 N -0.89 -24.27 8.59 55.43 0.48 -23.79 16 18 Si 0.89 21.07 29.54 -169.99 -5.02 16.05 16 19 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 20 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 21 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 22 C -0.19 -4.53 9.31 -26.70 -0.25 -4.78 16 23 C -0.19 -4.59 9.38 -26.70 -0.25 -4.84 16 24 H 0.04 0.46 8.14 -51.93 -0.42 0.03 16 25 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 27 H 0.06 1.02 6.72 -51.93 -0.35 0.67 16 28 H 0.07 0.94 6.60 -51.93 -0.34 0.60 16 29 H 0.40 4.38 9.10 45.56 0.41 4.79 16 30 H 0.07 1.00 7.82 -51.93 -0.41 0.60 16 31 H 0.08 1.03 7.86 -51.93 -0.41 0.63 16 32 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 33 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.04 0.75 7.65 -51.93 -0.40 0.35 16 35 H 0.10 1.90 7.92 -51.93 -0.41 1.49 16 36 H 0.06 1.25 6.30 -51.93 -0.33 0.92 16 37 H 0.02 0.38 6.41 -51.93 -0.33 0.05 16 38 H 0.25 6.76 8.31 -40.82 -0.34 6.42 16 39 H 0.11 2.91 6.30 -51.93 -0.33 2.58 16 40 H 0.04 0.79 8.05 -51.93 -0.42 0.37 16 41 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.11 3.00 6.27 -51.93 -0.33 2.68 16 LS Contribution 331.31 15.07 4.99 4.99 Total: -1.00 -30.40 331.31 -7.56 -37.95 By element: Atomic # 1 Polarization: 12.59 SS G_CDS: -5.68 Total: 6.91 kcal Atomic # 6 Polarization: -7.72 SS G_CDS: -0.16 Total: -7.87 kcal Atomic # 7 Polarization: -33.01 SS G_CDS: -0.28 Total: -33.29 kcal Atomic # 8 Polarization: -23.32 SS G_CDS: -1.41 Total: -24.74 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -30.40 -7.56 -37.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692325413.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.858 kcal (2) G-P(sol) polarization free energy of solvation -30.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds