Wall clock time and date at job start Tue Mar 31 2020 05:54:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86802 * 120.00269 * 2 1 4 4 H 1.48501 * 109.47068 * 273.20731 * 3 2 1 5 5 H 1.48504 * 109.46869 * 33.20382 * 3 2 1 6 6 H 1.48497 * 109.47462 * 153.20640 * 3 2 1 7 7 C 1.38950 * 120.00092 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00024 * 346.37355 * 7 2 1 9 9 N 1.37100 * 120.00213 * 166.37560 * 7 2 1 10 10 C 1.34776 * 120.00252 * 316.69691 * 9 7 2 11 11 O 1.21289 * 119.99632 * 4.62793 * 10 9 7 12 12 C 1.50699 * 120.00304 * 184.62601 * 10 9 7 13 13 H 1.08999 * 109.46697 * 14.13526 * 12 10 9 14 14 F 1.39896 * 109.46944 * 254.13527 * 12 10 9 15 15 C 1.52992 * 109.47030 * 134.13228 * 12 10 9 16 16 C 1.53000 * 109.47102 * 184.99847 * 15 12 10 17 17 C 1.52992 * 109.47441 * 295.00342 * 16 15 12 18 18 C 1.52999 * 109.47468 * 179.97438 * 17 16 15 19 19 C 1.52998 * 109.46921 * 59.99894 * 18 17 16 20 20 C 1.53001 * 109.47173 * 300.00183 * 19 18 17 21 21 C 1.52998 * 109.47258 * 175.00046 * 16 15 12 22 22 C 1.46503 * 119.99940 * 136.42274 * 9 7 2 23 23 C 1.53001 * 117.49769 * 7.25450 * 22 9 7 24 24 C 1.52993 * 59.99960 * 252.51262 * 23 22 9 25 25 H 0.97003 * 119.99590 * 359.97438 * 1 2 3 26 26 H 1.08998 * 109.47847 * 305.00051 * 15 12 10 27 27 H 1.09004 * 109.47092 * 65.00265 * 15 12 10 28 28 H 1.09005 * 109.46666 * 55.00599 * 16 15 12 29 29 H 1.09005 * 109.47401 * 299.99807 * 17 16 15 30 30 H 1.09005 * 109.47087 * 59.99815 * 17 16 15 31 31 H 1.09000 * 109.47077 * 300.00002 * 18 17 16 32 32 H 1.09001 * 109.47739 * 180.02562 * 18 17 16 33 33 H 1.09007 * 109.47329 * 180.02562 * 19 18 17 34 34 H 1.09000 * 109.47156 * 60.00158 * 19 18 17 35 35 H 1.08992 * 109.47225 * 299.99714 * 20 19 18 36 36 H 1.09005 * 109.47124 * 179.97438 * 20 19 18 37 37 H 1.08998 * 109.47249 * 300.00276 * 21 16 15 38 38 H 1.09000 * 109.47156 * 60.00330 * 21 16 15 39 39 H 1.08998 * 115.55129 * 152.96151 * 22 9 7 40 40 H 1.09003 * 117.50048 * 0.02562 * 23 22 9 41 41 H 1.09002 * 117.50049 * 145.02265 * 23 22 9 42 42 H 1.09009 * 117.49626 * 252.51062 * 24 23 22 43 43 H 1.08993 * 117.52317 * 107.48562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4279 2.0855 -1.3979 5 1 1.4811 2.6321 0.7667 6 1 3.5780 1.4215 0.6311 7 6 2.0089 -1.2033 -0.0005 8 1 1.4917 -2.1256 0.2194 9 7 3.3509 -1.2199 -0.2802 10 6 3.8370 -0.4786 -1.2954 11 8 3.1021 0.2671 -1.9077 12 6 5.2935 -0.5761 -1.6696 13 1 5.7320 -1.4549 -1.1968 14 9 5.9647 0.5716 -1.2343 15 6 5.4226 -0.6968 -3.1893 16 6 6.8899 -0.9208 -3.5604 17 6 7.7063 0.3165 -3.1818 18 6 9.1738 0.0923 -3.5523 19 6 9.2878 -0.1529 -5.0582 20 6 8.4714 -1.3903 -5.4367 21 6 7.0036 -1.1657 -5.0663 22 6 4.2576 -2.0389 0.5282 23 6 3.6301 -2.9814 1.5573 24 6 4.3580 -1.7180 2.0208 25 1 -0.4850 0.8401 0.0004 26 1 4.8267 -1.5399 -3.5388 27 1 5.0651 0.2199 -3.6583 28 1 7.2727 -1.7876 -3.0215 29 1 7.3236 1.1833 -3.7207 30 1 7.6254 0.4909 -2.1089 31 1 9.5563 -0.7743 -3.0130 32 1 9.7555 0.9736 -3.2822 33 1 10.3333 -0.3131 -5.3221 34 1 8.9053 0.7137 -5.5974 35 1 8.8539 -2.2569 -4.8976 36 1 8.5523 -1.5647 -6.5097 37 1 6.4219 -2.0472 -5.3360 38 1 6.6208 -0.2990 -5.6053 39 1 5.1633 -2.3753 0.0237 40 1 2.5427 -2.9924 1.6325 41 1 4.1230 -3.9381 1.7299 42 1 5.3298 -1.8436 2.4983 43 1 3.7500 -0.8973 2.4012 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000793185608.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:16 Heat of formation + Delta-G solvation = -65.632662 kcal Electronic energy + Delta-G solvation = -23771.596615 eV Core-core repulsion = 20345.737487 eV Total energy + Delta-G solvation = -3425.859128 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.169 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -47.46822 -39.19910 -38.57124 -36.54421 -33.43604 -32.92687 -31.56768 -30.72965 -29.10054 -25.63619 -23.45868 -22.61082 -21.98253 -21.55642 -20.91761 -19.76502 -19.22804 -17.67680 -16.70414 -16.16558 -15.47980 -15.09811 -14.98660 -14.50368 -14.30874 -14.16153 -13.78158 -13.59693 -13.56694 -13.05926 -12.70466 -12.56026 -12.49709 -11.98497 -11.81155 -11.59460 -11.39111 -11.17999 -11.12816 -11.00170 -10.87581 -10.56901 -10.40227 -10.34757 -10.16613 -10.03530 -9.97653 -9.73714 -9.59426 -8.64344 -8.40378 -7.56666 -6.22273 -4.09061 3.11182 3.54013 3.68451 3.77435 4.07170 4.43304 4.57794 4.65556 4.69194 4.73350 4.93459 4.96445 4.99787 5.13985 5.26376 5.33736 5.37895 5.45781 5.48383 5.51090 5.53065 5.53942 5.61519 5.64413 5.73990 5.91927 5.98588 6.04776 6.12749 6.13275 6.15674 6.19143 6.21073 6.32383 6.38635 6.49405 6.57624 6.61715 6.80154 7.75595 7.84541 8.63373 8.74293 9.32602 9.62303 10.79215 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.022373 B = 0.005308 C = 0.004917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.207660 B = 5274.266517 C = 5692.717061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.086 3.914 3 Si 0.930 3.070 4 H -0.251 1.251 5 H -0.317 1.317 6 H -0.283 1.283 7 C -0.349 4.349 8 H 0.100 0.900 9 N -0.423 5.423 10 C 0.421 3.579 11 O -0.525 6.525 12 C 0.082 3.918 13 H 0.090 0.910 14 F -0.197 7.197 15 C -0.128 4.128 16 C -0.084 4.084 17 C -0.133 4.133 18 C -0.118 4.118 19 C -0.120 4.120 20 C -0.118 4.118 21 C -0.114 4.114 22 C 0.052 3.948 23 C -0.171 4.171 24 C -0.193 4.193 25 H 0.274 0.726 26 H 0.083 0.917 27 H 0.084 0.916 28 H 0.069 0.931 29 H 0.061 0.939 30 H 0.086 0.914 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.056 0.944 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.058 0.942 37 H 0.062 0.938 38 H 0.063 0.937 39 H 0.114 0.886 40 H 0.111 0.889 41 H 0.089 0.911 42 H 0.088 0.912 43 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.203 -4.221 -5.040 18.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.501 5.501 2 C -0.124 4.124 3 Si 0.764 3.236 4 H -0.178 1.178 5 H -0.248 1.248 6 H -0.209 1.209 7 C -0.475 4.475 8 H 0.118 0.882 9 N -0.143 5.143 10 C 0.210 3.790 11 O -0.409 6.409 12 C 0.043 3.957 13 H 0.108 0.892 14 F -0.178 7.178 15 C -0.167 4.167 16 C -0.103 4.103 17 C -0.171 4.171 18 C -0.156 4.156 19 C -0.158 4.158 20 C -0.155 4.155 21 C -0.151 4.151 22 C -0.053 4.053 23 C -0.209 4.209 24 C -0.231 4.231 25 H 0.084 0.916 26 H 0.101 0.899 27 H 0.103 0.897 28 H 0.087 0.913 29 H 0.079 0.921 30 H 0.105 0.895 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.077 0.923 37 H 0.080 0.920 38 H 0.081 0.919 39 H 0.131 0.869 40 H 0.129 0.871 41 H 0.107 0.893 42 H 0.107 0.893 43 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 16.647 -3.760 -5.346 17.884 hybrid contribution 0.387 0.792 0.179 0.899 sum 17.034 -2.968 -5.167 18.047 Atomic orbital electron populations 1.69700 1.06838 1.28461 1.45136 1.25446 0.95149 0.99987 0.91770 0.85970 0.78350 0.81159 0.78140 1.17754 1.24789 1.20942 1.18846 0.80410 0.95641 1.52569 0.88238 1.43186 1.07055 1.39696 1.24315 1.20632 0.89476 0.86207 0.82689 1.90502 1.58693 1.38167 1.53495 1.21755 0.91348 0.85989 0.96618 0.89186 1.92719 1.80609 1.53203 1.91225 1.22041 0.96763 1.04675 0.93178 1.21167 0.94415 0.98586 0.96117 1.21998 0.93978 0.97508 1.03583 1.21542 0.97190 1.01171 0.95681 1.21551 0.99319 0.98249 0.96649 1.21524 0.95520 0.98002 1.00457 1.21577 0.96165 1.01769 0.95631 1.21942 0.95599 0.99749 0.87991 1.23148 1.01989 0.93170 1.02544 1.23252 1.01560 1.00400 0.97913 0.91643 0.89878 0.89731 0.91264 0.92071 0.89525 0.92306 0.92355 0.92563 0.92160 0.92153 0.92338 0.91951 0.91861 0.86879 0.87050 0.89290 0.89316 0.88347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.44 13.96 55.50 0.77 -25.66 16 2 C 0.09 2.54 5.02 -17.47 -0.09 2.45 16 3 Si 0.93 25.76 24.36 -169.99 -4.14 21.62 16 4 H -0.25 -7.29 6.08 56.52 0.34 -6.95 16 5 H -0.32 -8.60 7.11 56.52 0.40 -8.20 16 6 H -0.28 -7.75 7.06 56.52 0.40 -7.35 16 7 C -0.35 -9.69 8.72 -14.93 -0.13 -9.82 16 8 H 0.10 2.85 6.97 -52.49 -0.37 2.49 16 9 N -0.42 -10.10 2.53 -107.73 -0.27 -10.38 16 10 C 0.42 10.05 5.31 -10.99 -0.06 10.00 16 11 O -0.53 -14.62 11.19 5.55 0.06 -14.56 16 12 C 0.08 1.51 3.36 -27.89 -0.09 1.41 16 13 H 0.09 1.38 5.50 -51.93 -0.29 1.09 16 14 F -0.20 -3.82 13.88 2.25 0.03 -3.78 16 15 C -0.13 -2.02 4.28 -26.74 -0.11 -2.14 16 16 C -0.08 -1.05 2.19 -90.62 -0.20 -1.25 16 17 C -0.13 -1.68 4.65 -26.74 -0.12 -1.81 16 18 C -0.12 -1.22 5.92 -26.73 -0.16 -1.38 16 19 C -0.12 -1.13 5.92 -26.73 -0.16 -1.29 16 20 C -0.12 -1.10 5.92 -26.71 -0.16 -1.26 16 21 C -0.11 -1.24 5.21 -26.71 -0.14 -1.38 16 22 C 0.05 0.97 6.01 -67.93 -0.41 0.57 16 23 C -0.17 -2.86 9.82 -26.73 -0.26 -3.12 16 24 C -0.19 -3.31 10.29 -26.74 -0.28 -3.59 16 25 H 0.27 7.91 8.31 -40.82 -0.34 7.57 16 26 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 27 H 0.08 1.48 8.06 -51.93 -0.42 1.06 16 28 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 29 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.09 1.21 5.43 -51.93 -0.28 0.93 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 37 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.11 1.71 5.93 -51.93 -0.31 1.40 16 40 H 0.11 2.14 6.50 -51.93 -0.34 1.80 16 41 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 42 H 0.09 1.24 8.14 -51.92 -0.42 0.81 16 43 H 0.10 1.95 8.14 -51.93 -0.42 1.53 16 LS Contribution 329.48 15.07 4.97 4.97 Total: -1.00 -32.55 329.48 -8.06 -40.61 By element: Atomic # 1 Polarization: 6.91 SS G_CDS: -7.11 Total: -0.20 kcal Atomic # 6 Polarization: -10.24 SS G_CDS: -2.37 Total: -12.61 kcal Atomic # 7 Polarization: -36.54 SS G_CDS: 0.50 Total: -36.04 kcal Atomic # 8 Polarization: -14.62 SS G_CDS: 0.06 Total: -14.56 kcal Atomic # 9 Polarization: -3.82 SS G_CDS: 0.03 Total: -3.78 kcal Atomic # 14 Polarization: 25.76 SS G_CDS: -4.14 Total: 21.62 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -32.55 -8.06 -40.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793185608.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.022 kcal (2) G-P(sol) polarization free energy of solvation -32.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds