Wall clock time and date at job start Tue Mar 31 2020 06:08:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46685 * 2 1 4 4 C 1.52997 * 109.47134 * 120.00211 * 2 1 3 5 5 C 1.50699 * 109.47141 * 64.99828 * 4 2 1 6 6 O 1.21273 * 120.00164 * 0.02562 * 5 4 2 7 7 N 1.34783 * 119.99682 * 179.97438 * 5 4 2 8 8 N 1.40098 * 119.99725 * 180.02562 * 7 5 4 9 9 C 1.34775 * 119.99769 * 174.66198 * 8 7 5 10 10 O 1.21588 * 119.99752 * 185.09317 * 9 8 7 11 11 N 1.34770 * 120.00173 * 5.10091 * 9 8 7 12 12 C 1.46502 * 120.00077 * 175.17798 * 11 9 8 13 13 C 1.52998 * 109.46977 * 183.62490 * 12 11 9 14 14 C 1.50696 * 115.55457 * 306.82599 * 13 12 11 15 15 H 1.07995 * 120.00407 * 144.22027 * 14 13 12 16 16 C 1.37882 * 120.00090 * 324.22518 * 14 13 12 17 17 N 1.31518 * 119.99451 * 349.14633 * 16 14 13 18 18 Si 1.86796 * 120.00348 * 169.15075 * 16 14 13 19 19 H 1.48504 * 109.46760 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.47569 * 119.99550 * 18 16 14 21 21 H 1.48499 * 109.46704 * 239.99980 * 18 16 14 22 22 C 1.53003 * 117.49607 * 161.15862 * 13 12 11 23 23 C 1.53002 * 117.49873 * 92.50375 * 13 12 11 24 24 H 1.08997 * 109.47537 * 59.99889 * 1 2 3 25 25 H 1.09005 * 109.47392 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46981 * 299.99551 * 1 2 3 27 27 H 1.09001 * 109.46981 * 240.00449 * 2 1 3 28 28 H 1.09002 * 109.46767 * 180.02562 * 3 2 1 29 29 H 1.08998 * 109.47292 * 299.99753 * 3 2 1 30 30 H 1.09001 * 109.47044 * 60.00488 * 3 2 1 31 31 H 1.09005 * 109.47358 * 304.99993 * 4 2 1 32 32 H 1.08999 * 109.47187 * 185.00291 * 4 2 1 33 33 H 0.96997 * 119.99862 * 0.02562 * 7 5 4 34 34 H 0.97003 * 119.99916 * 354.66840 * 8 7 5 35 35 H 0.96995 * 119.99927 * 354.89580 * 11 9 8 36 36 H 1.08995 * 109.47454 * 303.63010 * 12 11 9 37 37 H 1.09010 * 109.47139 * 63.62817 * 12 11 9 38 38 H 0.97009 * 119.99628 * 185.03123 * 17 16 14 39 39 H 1.08998 * 117.49967 * 0.02562 * 22 13 12 40 40 H 1.09002 * 117.50281 * 145.02196 * 22 13 12 41 41 H 1.08998 * 117.49876 * 214.98152 * 23 13 12 42 42 H 1.09001 * 117.49781 * 359.97023 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6413 -2.1733 1.1888 6 8 1.0117 -2.5903 0.2399 7 7 1.9853 -3.0087 2.1890 8 7 1.6152 -4.3587 2.1326 9 6 2.0497 -5.2166 3.0769 10 8 1.8061 -6.4037 2.9781 11 7 2.7541 -4.7586 4.1306 12 6 3.1355 -5.6729 5.2099 13 6 3.8430 -4.8884 6.3167 14 6 5.0088 -4.0438 5.8714 15 1 5.1973 -3.0912 6.3440 16 6 5.8350 -4.4871 4.8604 17 7 5.7419 -5.7268 4.4312 18 14 7.0865 -3.3271 4.1005 19 1 6.9905 -1.9976 4.7553 20 1 8.4523 -3.8769 4.2935 21 1 6.8109 -3.1842 2.6483 22 6 3.9288 -5.5385 7.6991 23 6 2.9838 -4.3572 7.4658 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 3.1299 1.4426 -0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6766 1.9563 0.8900 31 1 1.6054 -0.2618 2.1370 32 1 3.1263 -0.6443 1.2951 33 1 2.4892 -2.6752 2.9477 34 1 1.0462 -4.6760 1.4139 35 1 3.0120 -3.8245 4.1725 36 1 2.2428 -6.1488 5.6155 37 1 3.8082 -6.4363 4.8187 38 1 6.3707 -6.0603 3.7721 39 1 3.4817 -6.5252 7.8199 40 1 4.8284 -5.3549 8.2866 41 1 3.2620 -3.3968 7.8999 42 1 1.9145 -4.5661 7.4331 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000797565512.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:41 Heat of formation + Delta-G solvation = -19.313685 kcal Electronic energy + Delta-G solvation = -22925.600981 eV Core-core repulsion = 19521.670357 eV Total energy + Delta-G solvation = -3403.930625 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.26786 -39.02350 -36.85293 -36.01514 -35.08089 -33.06741 -32.26078 -31.06684 -27.84504 -27.22498 -26.09021 -25.28607 -21.67945 -21.32992 -20.70846 -19.96438 -19.38571 -18.39602 -17.58448 -16.50114 -15.89606 -15.73586 -15.08878 -14.84900 -14.62662 -14.44978 -14.14182 -13.94972 -13.81642 -13.21343 -12.76150 -12.55161 -12.41892 -12.11324 -11.92986 -11.68366 -11.36147 -11.16403 -11.10712 -10.94368 -10.84755 -10.79576 -10.58760 -10.35781 -10.15301 -9.77494 -9.47268 -9.22987 -8.91768 -8.43866 -8.20220 -7.80557 -6.16689 -4.27528 2.13183 2.52055 3.10733 3.22591 3.23695 3.71064 3.76338 4.19734 4.40203 4.58026 4.74653 4.84941 5.07849 5.30859 5.34871 5.40814 5.46349 5.48040 5.53170 5.74107 5.83487 5.92555 5.96476 6.20333 6.22466 6.30591 6.45733 6.53633 6.61823 6.67921 6.76759 6.92216 7.16100 7.20766 7.45979 7.48897 7.59042 7.83268 8.06259 8.22976 8.66769 8.78097 9.12107 9.33615 10.80264 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.015071 B = 0.005035 C = 0.004412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1857.447012 B = 5559.716985 C = 6344.676969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.079 4.079 3 C -0.148 4.148 4 C -0.131 4.131 5 C 0.512 3.488 6 O -0.540 6.540 7 N -0.524 5.524 8 N -0.544 5.544 9 C 0.705 3.295 10 O -0.586 6.586 11 N -0.703 5.703 12 C 0.177 3.823 13 C 0.037 3.963 14 C -0.504 4.504 15 H 0.063 0.937 16 C 0.076 3.924 17 N -0.862 5.862 18 Si 0.886 3.114 19 H -0.271 1.271 20 H -0.282 1.282 21 H -0.282 1.282 22 C -0.194 4.194 23 C -0.212 4.212 24 H 0.051 0.949 25 H 0.075 0.925 26 H 0.048 0.952 27 H 0.079 0.921 28 H 0.056 0.944 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.099 0.901 32 H 0.100 0.900 33 H 0.423 0.577 34 H 0.434 0.566 35 H 0.391 0.609 36 H 0.028 0.972 37 H 0.108 0.892 38 H 0.264 0.736 39 H 0.067 0.933 40 H 0.080 0.920 41 H 0.076 0.924 42 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.079 12.067 -4.662 14.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.098 4.098 3 C -0.206 4.206 4 C -0.172 4.172 5 C 0.299 3.701 6 O -0.416 6.416 7 N -0.275 5.275 8 N -0.302 5.302 9 C 0.404 3.596 10 O -0.461 6.461 11 N -0.356 5.356 12 C 0.054 3.946 13 C 0.036 3.964 14 C -0.541 4.541 15 H 0.081 0.919 16 C -0.130 4.130 17 N -0.497 5.497 18 Si 0.713 3.287 19 H -0.195 1.195 20 H -0.208 1.208 21 H -0.208 1.208 22 C -0.232 4.232 23 C -0.249 4.249 24 H 0.070 0.930 25 H 0.093 0.907 26 H 0.067 0.933 27 H 0.097 0.903 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.118 0.882 32 H 0.118 0.882 33 H 0.265 0.735 34 H 0.279 0.721 35 H 0.226 0.774 36 H 0.046 0.954 37 H 0.126 0.874 38 H 0.075 0.925 39 H 0.086 0.914 40 H 0.099 0.901 41 H 0.094 0.906 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -6.552 10.747 -5.392 13.693 hybrid contribution 1.036 1.014 -0.120 1.454 sum -5.516 11.761 -5.512 14.111 Atomic orbital electron populations 1.21978 0.94697 1.03460 1.01042 1.20858 0.96658 0.95345 0.96967 1.21867 1.01067 0.95635 1.02013 1.21757 1.03610 0.90324 1.01546 1.20933 0.79812 0.88005 0.81363 1.90675 1.40436 1.77696 1.32839 1.45048 1.57943 0.99525 1.24960 1.44672 1.57039 0.96224 1.32237 1.15854 0.79835 0.84040 0.79823 1.90953 1.64549 1.12744 1.77869 1.45010 1.56039 1.13663 1.20928 1.20938 0.96085 0.92269 0.85316 1.19182 0.95115 0.96721 0.85381 1.20506 1.10873 1.04363 1.18379 0.91859 1.25001 0.96919 0.94976 0.96101 1.69866 1.35521 1.13941 1.30349 0.86630 0.81500 0.81352 0.79215 1.19507 1.20815 1.20791 1.22912 1.00359 0.94807 1.05143 1.22971 0.95320 0.97716 1.08891 0.92984 0.90659 0.93262 0.90290 0.92517 0.92392 0.92497 0.88227 0.88187 0.73508 0.72114 0.77387 0.95403 0.87410 0.92534 0.91443 0.90135 0.90594 0.91335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 8.93 37.16 0.33 -1.18 16 2 C -0.08 -0.74 2.57 -90.62 -0.23 -0.98 16 3 C -0.15 -1.10 9.19 37.16 0.34 -0.76 16 4 C -0.13 -1.22 5.17 -27.89 -0.14 -1.36 16 5 C 0.51 6.71 7.66 -10.98 -0.08 6.62 16 6 O -0.54 -8.61 13.81 5.56 0.08 -8.53 16 7 N -0.52 -7.29 6.25 31.22 0.20 -7.09 16 8 N -0.54 -9.23 6.26 27.63 0.17 -9.06 16 9 C 0.71 14.50 8.67 -86.93 -0.75 13.75 16 10 O -0.59 -14.17 17.19 5.29 0.09 -14.08 16 11 N -0.70 -14.23 5.25 -65.23 -0.34 -14.58 16 12 C 0.18 4.01 4.76 -4.04 -0.02 4.00 16 13 C 0.04 0.82 1.99 -155.66 -0.31 0.51 16 14 C -0.50 -12.00 8.24 -34.44 -0.28 -12.28 16 15 H 0.06 1.50 7.84 -52.49 -0.41 1.09 16 16 C 0.08 1.84 5.13 -17.82 -0.09 1.74 16 17 N -0.86 -22.33 10.81 55.43 0.60 -21.73 16 18 Si 0.89 18.86 29.55 -169.99 -5.02 13.84 16 19 H -0.27 -5.59 7.11 56.52 0.40 -5.18 16 20 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 21 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 22 C -0.19 -4.07 9.96 -26.69 -0.27 -4.34 16 23 C -0.21 -4.15 9.92 -26.69 -0.26 -4.42 16 24 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 25 H 0.07 0.92 5.95 -51.93 -0.31 0.61 16 26 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 27 H 0.08 0.85 7.95 -51.93 -0.41 0.44 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.10 0.81 8.14 -51.93 -0.42 0.38 16 33 H 0.42 5.25 6.72 -182.60 -1.23 4.02 16 34 H 0.43 7.26 8.12 -182.60 -1.48 5.78 16 35 H 0.39 7.24 5.84 -40.82 -0.24 7.01 16 36 H 0.03 0.62 8.08 -51.93 -0.42 0.20 16 37 H 0.11 2.82 6.08 -51.92 -0.32 2.51 16 38 H 0.26 6.72 8.32 -40.82 -0.34 6.39 16 39 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 40 H 0.08 1.70 8.14 -51.93 -0.42 1.28 16 41 H 0.08 1.44 8.14 -51.93 -0.42 1.01 16 42 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 LS Contribution 347.12 15.07 5.23 5.23 Total: -1.00 -29.19 347.12 -9.38 -38.57 By element: Atomic # 1 Polarization: 24.73 SS G_CDS: -8.60 Total: 16.13 kcal Atomic # 6 Polarization: 3.08 SS G_CDS: -1.78 Total: 1.30 kcal Atomic # 7 Polarization: -53.09 SS G_CDS: 0.62 Total: -52.46 kcal Atomic # 8 Polarization: -22.78 SS G_CDS: 0.17 Total: -22.61 kcal Atomic # 14 Polarization: 18.86 SS G_CDS: -5.02 Total: 13.84 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -29.19 -9.38 -38.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797565512.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.255 kcal (2) G-P(sol) polarization free energy of solvation -29.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds