Wall clock time and date at job start Tue Mar 31 2020 06:44:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46507 * 109.47093 * 2 1 4 4 C 1.46495 * 120.00228 * 274.93243 * 3 2 1 5 5 C 1.50701 * 109.47256 * 263.13532 * 4 3 2 6 6 H 1.07988 * 119.99924 * 359.97438 * 5 4 3 7 7 C 1.37881 * 119.99747 * 179.97438 * 5 4 3 8 8 N 1.31514 * 119.99540 * 179.97438 * 7 5 4 9 9 Si 1.86794 * 120.00266 * 0.02562 * 7 5 4 10 10 H 1.48497 * 109.47469 * 89.99995 * 9 7 5 11 11 H 1.48500 * 109.47202 * 210.00074 * 9 7 5 12 12 H 1.48502 * 109.47040 * 329.99809 * 9 7 5 13 13 C 1.34774 * 119.99835 * 94.93346 * 3 2 1 14 14 O 1.21608 * 120.00385 * 3.68939 * 13 3 2 15 15 C 1.47302 * 119.99875 * 183.69517 * 13 3 2 16 16 F 1.35099 * 119.99867 * 353.44648 * 15 13 3 17 17 C 1.33112 * 119.99812 * 173.72264 * 15 13 3 18 18 C 1.50704 * 119.99858 * 179.72073 * 17 15 13 19 19 C 1.52999 * 109.47151 * 240.00043 * 18 17 15 20 20 C 1.52997 * 109.46856 * 180.02562 * 19 18 17 21 21 C 1.52999 * 109.47393 * 60.00326 * 20 19 18 22 22 C 1.52996 * 109.46968 * 300.00038 * 21 20 19 23 23 C 1.52997 * 109.47095 * 59.99780 * 22 21 20 24 24 H 1.08994 * 109.47144 * 59.99678 * 1 2 3 25 25 H 1.09000 * 109.46625 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.46862 * 299.99474 * 1 2 3 27 27 H 1.09004 * 109.47317 * 240.00421 * 2 1 3 28 28 H 1.08999 * 109.47714 * 119.99905 * 2 1 3 29 29 H 1.09007 * 109.46983 * 23.13279 * 4 3 2 30 30 H 1.09004 * 109.47604 * 143.13355 * 4 3 2 31 31 H 0.97001 * 120.00038 * 179.97438 * 8 7 5 32 32 H 1.08003 * 120.00424 * 359.72635 * 17 15 13 33 33 H 1.08996 * 109.47321 * 0.02562 * 18 17 15 34 34 H 1.08998 * 109.47553 * 299.99894 * 19 18 17 35 35 H 1.08999 * 109.46979 * 60.00263 * 19 18 17 36 36 H 1.09006 * 109.47552 * 299.99724 * 20 19 18 37 37 H 1.09003 * 109.47233 * 180.02562 * 20 19 18 38 38 H 1.08999 * 109.47081 * 179.97438 * 21 20 19 39 39 H 1.08996 * 109.46891 * 59.99595 * 21 20 19 40 40 H 1.09008 * 109.47172 * 299.99893 * 22 21 20 41 41 H 1.08999 * 109.47093 * 179.97438 * 22 21 20 42 42 H 1.09006 * 109.46898 * 180.02562 * 23 22 21 43 43 H 1.08997 * 109.47450 * 60.00590 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1597 2.1083 -1.2640 5 6 3.5891 2.0253 -1.7341 6 1 4.3192 1.4855 -1.1496 7 6 3.9645 2.6387 -2.9105 8 7 5.2121 2.5668 -3.3205 9 14 2.7017 3.5731 -3.9211 10 1 2.6678 4.9914 -3.4825 11 1 3.0711 3.5080 -5.3579 12 1 1.3620 2.9626 -3.7264 13 6 2.3376 1.9831 1.1629 14 8 2.2845 1.3590 2.2052 15 6 2.7507 3.3970 1.1713 16 9 2.9377 4.0530 0.0051 17 6 2.9451 4.0267 2.3278 18 6 3.3738 5.4714 2.3364 19 6 4.7197 5.5998 3.0527 20 6 5.1546 7.0666 3.0619 21 6 4.1051 7.9052 3.7942 22 6 2.7593 7.7768 3.0780 23 6 2.3244 6.3100 3.0688 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3632 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.5043 1.6646 -2.0136 30 1 1.8863 3.1529 -1.1149 31 1 5.4762 2.9980 -4.1482 32 1 2.7956 3.5023 3.2601 33 1 3.4723 5.8273 1.3109 34 1 4.6208 5.2441 4.0783 35 1 5.4672 5.0021 2.5312 36 1 5.2534 7.4228 2.0364 37 1 6.1136 7.1581 3.5718 38 1 4.4152 8.9501 3.8012 39 1 4.0064 7.5490 4.8196 40 1 2.8580 8.1330 2.0525 41 1 2.0115 8.3739 3.6000 42 1 1.3657 6.2185 2.5581 43 1 2.2255 5.9538 4.0942 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000798284149.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:33 Heat of formation + Delta-G solvation = -83.499011 kcal Electronic energy + Delta-G solvation = -23334.104134 eV Core-core repulsion = 19907.470263 eV Total energy + Delta-G solvation = -3426.633871 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.169 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -48.30547 -39.19111 -38.55239 -35.53690 -33.22596 -32.65494 -30.84909 -30.72701 -29.21762 -27.61314 -24.39240 -22.74344 -22.53179 -22.24187 -20.23685 -19.59046 -18.72078 -17.08167 -16.65073 -16.24609 -15.37428 -15.19160 -15.04190 -14.40644 -14.21652 -14.10106 -14.06206 -13.63420 -13.25600 -12.95464 -12.69147 -12.57248 -12.47022 -12.29141 -12.17135 -12.01587 -11.75688 -11.23842 -11.12450 -11.00447 -10.93330 -10.64832 -10.46027 -10.40487 -10.25561 -10.19956 -10.17716 -9.57954 -9.27378 -8.66550 -8.60357 -7.80383 -6.14283 -4.14061 1.63876 3.23464 3.29657 3.31157 3.57121 3.68413 4.33763 4.62085 4.73494 4.79782 4.83723 5.15933 5.17689 5.27367 5.29229 5.42296 5.49599 5.52244 5.54987 5.62465 5.65600 5.67842 5.74540 5.85006 5.99073 6.01408 6.13827 6.14254 6.17142 6.19530 6.24610 6.35571 6.38660 6.46912 6.49759 6.59419 6.75037 6.86891 7.30992 7.50259 8.01439 8.40683 8.66289 8.89738 9.45360 10.98847 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.014190 B = 0.005938 C = 0.004734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1972.788374 B = 4714.161277 C = 5913.333899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.110 3.890 3 N -0.578 5.578 4 C 0.186 3.814 5 C -0.530 4.530 6 H 0.075 0.925 7 C 0.079 3.921 8 N -0.894 5.894 9 Si 0.870 3.130 10 H -0.272 1.272 11 H -0.284 1.284 12 H -0.265 1.265 13 C 0.545 3.455 14 O -0.557 6.557 15 C 0.034 3.966 16 F -0.110 7.110 17 C -0.140 4.140 18 C -0.061 4.061 19 C -0.109 4.109 20 C -0.120 4.120 21 C -0.119 4.119 22 C -0.120 4.120 23 C -0.108 4.108 24 H 0.055 0.945 25 H 0.061 0.939 26 H 0.053 0.947 27 H 0.080 0.920 28 H 0.079 0.921 29 H 0.032 0.968 30 H 0.055 0.945 31 H 0.265 0.735 32 H 0.143 0.857 33 H 0.085 0.915 34 H 0.063 0.937 35 H 0.067 0.933 36 H 0.063 0.937 37 H 0.061 0.939 38 H 0.058 0.942 39 H 0.060 0.940 40 H 0.063 0.937 41 H 0.060 0.940 42 H 0.063 0.937 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.184 7.188 10.910 14.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.013 4.013 3 N -0.306 5.306 4 C 0.065 3.935 5 C -0.568 4.568 6 H 0.093 0.907 7 C -0.124 4.124 8 N -0.532 5.532 9 Si 0.697 3.303 10 H -0.197 1.197 11 H -0.210 1.210 12 H -0.190 1.190 13 C 0.333 3.667 14 O -0.439 6.439 15 C 0.012 3.988 16 F -0.088 7.088 17 C -0.161 4.161 18 C -0.080 4.080 19 C -0.146 4.146 20 C -0.157 4.157 21 C -0.156 4.156 22 C -0.157 4.157 23 C -0.146 4.146 24 H 0.075 0.925 25 H 0.080 0.920 26 H 0.072 0.928 27 H 0.098 0.902 28 H 0.098 0.902 29 H 0.050 0.950 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.161 0.839 33 H 0.103 0.897 34 H 0.082 0.918 35 H 0.086 0.914 36 H 0.082 0.918 37 H 0.080 0.920 38 H 0.077 0.923 39 H 0.079 0.921 40 H 0.081 0.919 41 H 0.079 0.921 42 H 0.081 0.919 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -6.092 6.911 11.182 14.488 hybrid contribution -0.402 0.532 -1.080 1.269 sum -6.494 7.443 10.102 14.129 Atomic orbital electron populations 1.22124 0.96507 1.01593 1.01974 1.21377 0.93521 0.83153 1.03273 1.47963 1.61440 1.13741 1.07451 1.20432 0.98722 0.93569 0.80767 1.21246 0.92926 1.34901 1.07760 0.90694 1.24785 0.95052 0.95520 0.97020 1.69891 1.16429 1.44044 1.22791 0.86942 0.82294 0.81232 0.79869 1.19717 1.21023 1.19003 1.18285 0.77953 0.86375 0.84101 1.90718 1.56155 1.65023 1.31993 1.19733 1.05225 0.91316 0.82538 1.91509 1.92126 1.79856 1.45339 1.23653 0.98678 0.96584 0.97213 1.20245 0.95268 0.91111 1.01344 1.21508 0.96079 0.96470 1.00579 1.21540 0.98086 0.95170 1.00938 1.21539 0.95241 0.99503 0.99351 1.21537 0.96851 0.96374 1.00939 1.21519 0.98032 0.94454 1.00556 0.92547 0.91963 0.92798 0.90163 0.90231 0.95022 0.92787 0.92497 0.83922 0.89713 0.91788 0.91411 0.91780 0.92016 0.92330 0.92110 0.91851 0.92128 0.91860 0.91736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.44 10.24 37.16 0.38 -2.06 16 2 C 0.11 1.98 6.18 -4.04 -0.02 1.96 16 3 N -0.58 -12.33 2.48 -176.37 -0.44 -12.77 16 4 C 0.19 4.32 3.86 -5.20 -0.02 4.30 16 5 C -0.53 -14.53 8.83 -34.44 -0.30 -14.84 16 6 H 0.07 2.31 8.06 -52.49 -0.42 1.88 16 7 C 0.08 2.22 5.47 -17.82 -0.10 2.12 16 8 N -0.89 -26.71 13.96 55.43 0.77 -25.94 16 9 Si 0.87 20.66 27.47 -169.99 -4.67 15.99 16 10 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 11 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 12 H -0.27 -5.95 6.54 56.52 0.37 -5.58 16 13 C 0.55 11.68 7.56 -12.58 -0.10 11.59 16 14 O -0.56 -12.35 15.73 5.27 0.08 -12.27 16 15 C 0.03 0.68 7.10 -37.68 -0.27 0.41 16 16 F -0.11 -2.40 11.46 2.25 0.03 -2.38 16 17 C -0.14 -2.29 8.35 -36.09 -0.30 -2.59 16 18 C -0.06 -0.85 2.46 -91.77 -0.23 -1.08 16 19 C -0.11 -1.37 5.19 -26.73 -0.14 -1.51 16 20 C -0.12 -1.30 5.92 -26.73 -0.16 -1.46 16 21 C -0.12 -1.13 5.92 -26.73 -0.16 -1.29 16 22 C -0.12 -1.21 5.92 -26.73 -0.16 -1.36 16 23 C -0.11 -1.25 5.18 -26.73 -0.14 -1.38 16 24 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 25 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.08 1.43 8.11 -51.93 -0.42 1.01 16 28 H 0.08 1.44 7.23 -51.93 -0.38 1.06 16 29 H 0.03 0.72 7.08 -51.92 -0.37 0.35 16 30 H 0.05 1.26 4.81 -51.93 -0.25 1.01 16 31 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 32 H 0.14 2.22 7.51 -52.48 -0.39 1.83 16 33 H 0.08 1.33 7.02 -51.93 -0.36 0.96 16 34 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 35 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.06 0.67 8.14 -51.92 -0.42 0.25 16 41 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 LS Contribution 343.99 15.07 5.18 5.18 Total: -1.00 -30.42 343.99 -8.01 -38.43 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: -7.26 Total: 0.94 kcal Atomic # 6 Polarization: -5.49 SS G_CDS: -1.71 Total: -7.20 kcal Atomic # 7 Polarization: -39.04 SS G_CDS: 0.34 Total: -38.70 kcal Atomic # 8 Polarization: -12.35 SS G_CDS: 0.08 Total: -12.27 kcal Atomic # 9 Polarization: -2.40 SS G_CDS: 0.03 Total: -2.38 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -4.67 Total: 15.99 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -30.42 -8.01 -38.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798284149.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.070 kcal (2) G-P(sol) polarization free energy of solvation -30.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds