Wall clock time and date at job start Tue Mar 31 2020 05:57:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86807 * 119.99639 * 2 1 4 4 H 1.48498 * 109.46823 * 269.99372 * 3 2 1 5 5 H 1.48492 * 109.47121 * 29.99561 * 3 2 1 6 6 H 1.48504 * 109.46835 * 149.99449 * 3 2 1 7 7 C 1.37871 * 120.00309 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00337 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99981 * 0.02562 * 7 2 1 10 10 N 1.46497 * 109.47256 * 180.02562 * 9 7 2 11 11 C 1.46500 * 120.00282 * 84.13586 * 10 9 7 12 12 C 1.52996 * 109.47174 * 90.96993 * 11 10 9 13 13 C 1.53003 * 117.50053 * 175.00006 * 12 11 10 14 14 C 1.52998 * 117.49547 * 243.62336 * 12 11 10 15 15 C 1.34780 * 119.99789 * 264.14011 * 10 9 7 16 16 O 1.21279 * 119.99967 * 184.45205 * 15 10 9 17 17 C 1.50702 * 119.99763 * 4.44326 * 15 10 9 18 18 F 1.39894 * 109.47127 * 42.01703 * 17 15 10 19 19 C 1.52999 * 109.47100 * 282.01506 * 17 15 10 20 20 C 1.53005 * 109.46974 * 179.97438 * 19 17 15 21 21 C 1.53003 * 109.46614 * 60.00543 * 20 19 17 22 22 C 1.52999 * 109.47006 * 299.99437 * 21 20 19 23 23 C 1.52996 * 109.46897 * 162.01978 * 17 15 10 24 24 H 0.96996 * 120.00460 * 0.02562 * 1 2 3 25 25 H 1.08991 * 109.47236 * 59.99855 * 9 7 2 26 26 H 1.09004 * 109.47118 * 299.99774 * 9 7 2 27 27 H 1.08997 * 109.47209 * 330.96515 * 11 10 9 28 28 H 1.09010 * 109.46742 * 210.96820 * 11 10 9 29 29 H 1.09005 * 115.56208 * 29.30628 * 12 11 10 30 30 H 1.09003 * 117.49707 * 359.97438 * 13 12 11 31 31 H 1.08994 * 117.49935 * 214.97686 * 13 12 11 32 32 H 1.09003 * 117.50156 * 145.01987 * 14 12 11 33 33 H 1.09001 * 117.50418 * 359.97438 * 14 12 11 34 34 H 1.09000 * 109.47103 * 300.00161 * 19 17 15 35 35 H 1.09005 * 109.47280 * 60.00306 * 19 17 15 36 36 H 1.08994 * 109.47232 * 300.00483 * 20 19 17 37 37 H 1.09002 * 109.46875 * 179.97438 * 20 19 17 38 38 H 1.09008 * 109.46911 * 180.02562 * 21 20 19 39 39 H 1.08994 * 109.47370 * 60.00025 * 21 20 19 40 40 H 1.09000 * 109.47103 * 300.00543 * 22 21 20 41 41 H 1.08998 * 109.47074 * 180.02562 * 22 21 20 42 42 H 1.09008 * 109.46929 * 299.99797 * 23 17 15 43 43 H 1.08997 * 109.47952 * 59.99955 * 23 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4464 2.6527 0.6999 6 1 3.5466 1.4403 0.7002 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2031 -3.6126 0.0018 11 6 2.7767 -4.0846 1.2645 12 6 1.8986 -5.1981 1.8389 13 6 2.3925 -5.9069 3.1017 14 6 1.2130 -4.9355 3.1812 15 6 2.5513 -4.2027 -1.1589 16 8 3.2759 -5.1753 -1.1511 17 6 2.0401 -3.6542 -2.4661 18 9 2.1044 -2.2569 -2.4425 19 6 0.5894 -4.0946 -2.6715 20 6 0.0702 -3.5372 -3.9985 21 6 0.9316 -4.0677 -5.1463 22 6 2.3824 -3.6272 -4.9409 23 6 2.9016 -4.1851 -3.6136 24 1 -0.4850 0.8400 -0.0004 25 1 0.6248 -2.5571 -0.8896 26 1 0.6241 -2.5567 0.8903 27 1 2.8250 -3.2578 1.9731 28 1 3.7809 -4.4693 1.0860 29 1 1.3570 -5.7956 1.1054 30 1 3.3432 -5.5801 3.5230 31 1 2.1759 -6.9706 3.1991 32 1 0.2204 -5.3603 3.3310 33 1 1.3878 -3.9697 3.6553 34 1 0.5393 -5.1833 -2.6899 35 1 -0.0244 -3.7164 -1.8540 36 1 0.1203 -2.4485 -3.9797 37 1 -0.9632 -3.8513 -4.1450 38 1 0.5621 -3.6702 -6.0917 39 1 0.8816 -5.1563 -5.1651 40 1 2.4324 -2.5385 -4.9221 41 1 2.9960 -4.0048 -5.7588 42 1 3.9352 -3.8714 -3.4673 43 1 2.8516 -5.2738 -3.6321 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000810483782.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:53 Heat of formation + Delta-G solvation = -86.563961 kcal Electronic energy + Delta-G solvation = -24244.488875 eV Core-core repulsion = 20817.722097 eV Total energy + Delta-G solvation = -3426.766777 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.169 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -48.65807 -40.92060 -38.68230 -37.92275 -36.45771 -34.40829 -31.94536 -31.67906 -29.64315 -27.95183 -25.20477 -23.96868 -23.77220 -23.22312 -21.86579 -20.72153 -20.16045 -18.58317 -18.06862 -17.80590 -16.96703 -16.54276 -16.36616 -15.99456 -15.79633 -15.53391 -14.83666 -14.71552 -14.38672 -14.34526 -14.10674 -13.69353 -13.56573 -13.40381 -13.11564 -13.08993 -12.79051 -12.73853 -12.60458 -12.41130 -12.35786 -12.12240 -12.02616 -11.75996 -11.56273 -11.47028 -11.36753 -10.96067 -10.84474 -10.61364 -10.36007 -9.54001 -8.15173 -6.24076 1.39249 1.40535 1.46962 1.51509 2.11375 2.43680 2.92521 3.16144 3.31092 3.52696 3.58905 3.75492 3.83849 3.98553 4.08723 4.15862 4.19061 4.30312 4.35772 4.39584 4.47793 4.59644 4.64788 4.73800 4.78501 4.83588 4.90322 4.97980 4.99951 5.08042 5.16227 5.20100 5.22225 5.23102 5.25421 5.28204 5.36042 5.53106 5.67664 5.80088 6.10936 6.48804 6.80386 7.11725 7.43235 8.91822 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.010197 B = 0.009261 C = 0.005634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2745.196215 B = 3022.709243 C = 4968.376372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.024 3.976 3 Si 0.948 3.052 4 H -0.279 1.279 5 H -0.279 1.279 6 H -0.273 1.273 7 C -0.522 4.522 8 H 0.043 0.957 9 C 0.247 3.753 10 N -0.585 5.585 11 C 0.148 3.852 12 C -0.180 4.180 13 C -0.154 4.154 14 C -0.174 4.174 15 C 0.490 3.510 16 O -0.576 6.576 17 C 0.106 3.894 18 F -0.187 7.187 19 C -0.135 4.135 20 C -0.115 4.115 21 C -0.113 4.113 22 C -0.117 4.117 23 C -0.117 4.117 24 H 0.265 0.735 25 H 0.046 0.954 26 H 0.015 0.985 27 H 0.075 0.925 28 H 0.069 0.931 29 H 0.088 0.912 30 H 0.103 0.897 31 H 0.110 0.890 32 H 0.102 0.898 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.064 0.936 36 H 0.050 0.950 37 H 0.087 0.913 38 H 0.084 0.916 39 H 0.078 0.922 40 H 0.053 0.947 41 H 0.093 0.907 42 H 0.059 0.941 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.604 -9.440 -4.388 10.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.176 4.176 3 Si 0.774 3.226 4 H -0.205 1.205 5 H -0.204 1.204 6 H -0.197 1.197 7 C -0.561 4.561 8 H 0.061 0.939 9 C 0.127 3.873 10 N -0.313 5.313 11 C 0.025 3.975 12 C -0.199 4.199 13 C -0.192 4.192 14 C -0.211 4.211 15 C 0.277 3.723 16 O -0.457 6.457 17 C 0.085 3.915 18 F -0.167 7.167 19 C -0.173 4.173 20 C -0.152 4.152 21 C -0.151 4.151 22 C -0.154 4.154 23 C -0.155 4.155 24 H 0.074 0.926 25 H 0.064 0.936 26 H 0.033 0.967 27 H 0.094 0.906 28 H 0.087 0.913 29 H 0.106 0.894 30 H 0.121 0.879 31 H 0.128 0.872 32 H 0.120 0.880 33 H 0.110 0.890 34 H 0.110 0.890 35 H 0.083 0.917 36 H 0.069 0.931 37 H 0.106 0.894 38 H 0.103 0.897 39 H 0.097 0.903 40 H 0.072 0.928 41 H 0.111 0.889 42 H 0.078 0.922 43 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 0.815 -9.750 -4.338 10.703 hybrid contribution 0.353 1.398 0.393 1.494 sum 1.168 -8.352 -3.945 9.311 Atomic orbital electron populations 1.69988 1.06911 1.27723 1.51325 1.25484 0.95532 1.01743 0.94823 0.85711 0.78773 0.79964 0.78158 1.20454 1.20392 1.19735 1.21438 0.92656 0.91571 1.50451 0.93855 1.19369 0.87506 0.82657 0.97765 1.48251 1.43853 1.33428 1.05809 1.20960 0.95978 0.95550 0.84975 1.22530 1.04306 1.01301 0.91792 1.23011 0.98774 0.98675 0.98696 1.23084 0.97904 1.01214 0.98914 1.21301 0.80692 0.83512 0.86783 1.90576 1.39319 1.27951 1.87892 1.21163 0.99522 0.77288 0.93562 1.93023 1.97473 1.29069 1.97175 1.22170 0.92132 1.02406 1.00557 1.21488 1.00475 1.00376 0.92881 1.21567 0.93692 1.01669 0.98136 1.21563 0.97541 1.00699 0.95629 1.21895 0.98038 1.02269 0.93302 0.92603 0.93590 0.96697 0.90625 0.91292 0.89412 0.87867 0.87178 0.87961 0.88981 0.88967 0.91718 0.93142 0.89432 0.89710 0.90295 0.92778 0.88891 0.92171 0.88918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.03 13.29 21.44 0.28 -51.75 16 2 C 0.02 1.30 5.46 84.65 0.46 1.76 16 3 Si 0.95 43.83 29.54 68.60 2.03 45.86 16 4 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 5 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 6 H -0.27 -12.39 7.11 99.48 0.71 -11.69 16 7 C -0.52 -28.47 7.72 25.60 0.20 -28.27 16 8 H 0.04 2.44 7.81 -2.91 -0.02 2.42 16 9 C 0.25 12.34 4.58 85.63 0.39 12.73 16 10 N -0.59 -25.95 2.46 -826.15 -2.03 -27.98 16 11 C 0.15 5.78 5.66 86.38 0.49 6.27 16 12 C -0.18 -5.95 6.01 -10.79 -0.06 -6.01 16 13 C -0.15 -3.89 10.25 30.60 0.31 -3.58 16 14 C -0.17 -4.89 10.18 30.60 0.31 -4.58 16 15 C 0.49 21.16 6.69 87.66 0.59 21.75 16 16 O -0.58 -25.77 15.66 -3.03 -0.05 -25.81 16 17 C 0.11 4.08 0.72 -11.54 -0.01 4.07 16 18 F -0.19 -8.63 12.16 44.97 0.55 -8.09 16 19 C -0.13 -4.50 4.70 30.60 0.14 -4.35 16 20 C -0.11 -3.20 5.80 30.60 0.18 -3.02 16 21 C -0.11 -2.52 5.92 30.60 0.18 -2.34 16 22 C -0.12 -2.98 5.80 30.61 0.18 -2.81 16 23 C -0.12 -3.72 4.44 30.61 0.14 -3.58 16 24 H 0.26 14.24 8.31 -92.71 -0.77 13.47 16 25 H 0.05 2.37 3.90 -2.39 -0.01 2.36 16 26 H 0.01 0.79 8.11 -2.38 -0.02 0.77 16 27 H 0.08 2.99 7.80 -2.39 -0.02 2.97 16 28 H 0.07 2.70 7.52 -2.38 -0.02 2.68 16 29 H 0.09 3.11 8.14 -2.38 -0.02 3.09 16 30 H 0.10 2.39 8.14 -2.39 -0.02 2.37 16 31 H 0.11 2.35 8.14 -2.39 -0.02 2.33 16 32 H 0.10 2.59 8.14 -2.39 -0.02 2.57 16 33 H 0.09 2.67 8.03 -2.39 -0.02 2.65 16 34 H 0.09 2.70 8.14 -2.39 -0.02 2.68 16 35 H 0.06 2.46 5.91 -2.38 -0.01 2.45 16 36 H 0.05 1.66 7.80 -2.39 -0.02 1.64 16 37 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 38 H 0.08 1.55 8.14 -2.38 -0.02 1.53 16 39 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 40 H 0.05 1.57 7.80 -2.39 -0.02 1.55 16 41 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 42 H 0.06 2.03 8.14 -2.38 -0.02 2.01 16 43 H 0.09 2.75 7.91 -2.39 -0.02 2.73 16 Total: -1.00 -62.85 340.69 5.25 -57.60 By element: Atomic # 1 Polarization: 21.16 SS G_CDS: 0.98 Total: 22.14 kcal Atomic # 6 Polarization: -15.46 SS G_CDS: 3.49 Total: -11.97 kcal Atomic # 7 Polarization: -77.98 SS G_CDS: -1.75 Total: -79.73 kcal Atomic # 8 Polarization: -25.77 SS G_CDS: -0.05 Total: -25.81 kcal Atomic # 9 Polarization: -8.63 SS G_CDS: 0.55 Total: -8.09 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.86 kcal Total: -62.85 5.25 -57.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810483782.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.968 kcal (2) G-P(sol) polarization free energy of solvation -62.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds