Wall clock time and date at job start Tue Mar 31 2020 05:22:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46825 * 124.33333 * 2 1 4 4 C 1.54481 * 105.44388 * 197.00180 * 3 2 1 5 5 C 1.54625 * 101.79703 * 334.62720 * 4 3 2 6 6 H 1.09010 * 110.48568 * 143.45878 * 5 4 3 7 7 C 1.52998 * 110.48984 * 266.09826 * 5 4 3 8 8 O 1.45198 * 109.47218 * 184.99752 * 7 5 4 9 9 C 1.34230 * 116.99707 * 180.02562 * 8 7 5 10 10 O 1.20819 * 120.00129 * 0.02562 * 9 8 7 11 11 C 1.50707 * 119.99979 * 180.02562 * 9 8 7 12 12 C 1.52998 * 109.47096 * 180.02562 * 11 9 8 13 13 C 1.53004 * 109.46799 * 179.97438 * 12 11 9 14 14 C 1.52998 * 109.46799 * 179.97438 * 13 12 11 15 15 C 1.50699 * 109.47098 * 179.97438 * 14 13 12 16 16 H 1.08002 * 120.00061 * 0.02562 * 15 14 13 17 17 C 1.37876 * 120.00049 * 179.97438 * 15 14 13 18 18 N 1.31513 * 120.00081 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99838 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47224 * 0.02562 * 19 17 15 21 21 H 1.48496 * 109.47084 * 120.00180 * 19 17 15 22 22 H 1.48499 * 109.47126 * 240.00130 * 19 17 15 23 23 C 1.34414 * 124.34881 * 180.02562 * 2 1 3 24 24 O 1.21283 * 124.94790 * 359.55020 * 23 2 1 25 25 H 1.08998 * 109.46641 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.46979 * 299.98314 * 1 2 3 27 27 H 1.08996 * 109.47131 * 59.98147 * 1 2 3 28 28 H 1.08998 * 110.23857 * 78.01832 * 3 2 1 29 29 H 1.09000 * 110.28306 * 316.00091 * 3 2 1 30 30 H 1.09002 * 110.96936 * 216.49131 * 4 3 2 31 31 H 1.09003 * 110.97019 * 92.76754 * 4 3 2 32 32 H 1.09000 * 109.47246 * 305.00719 * 7 5 4 33 33 H 1.09006 * 109.46582 * 65.00625 * 7 5 4 34 34 H 1.08996 * 109.46851 * 300.00343 * 11 9 8 35 35 H 1.09000 * 109.47021 * 59.99969 * 11 9 8 36 36 H 1.09001 * 109.47012 * 299.99809 * 12 11 9 37 37 H 1.09000 * 109.47295 * 60.00033 * 12 11 9 38 38 H 1.09001 * 109.47230 * 299.99733 * 13 12 11 39 39 H 1.09000 * 109.47123 * 59.99985 * 13 12 11 40 40 H 1.08996 * 109.47466 * 299.99920 * 14 13 12 41 41 H 1.09000 * 109.47295 * 60.00091 * 14 13 12 42 42 H 0.96999 * 119.99495 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2931 1.2124 0.0000 4 6 3.7010 0.7490 -0.4354 5 6 3.6898 -0.7377 -0.0107 6 1 4.2327 -1.3454 -0.7349 7 6 4.2931 -0.9004 1.3859 8 8 4.3805 -2.3121 1.7140 9 6 4.8914 -2.6282 2.9143 10 8 5.2532 -1.7543 3.6660 11 6 5.0139 -4.0732 3.3243 12 6 5.6210 -4.1559 4.7262 13 6 5.7447 -5.6230 5.1426 14 6 6.3525 -5.7057 6.5443 15 6 6.4737 -7.1506 6.9547 16 1 6.1501 -7.9319 6.2829 17 6 6.9988 -7.4753 8.1875 18 7 7.3934 -6.5241 9.0055 19 14 7.1498 -9.2665 8.6960 20 1 6.6400 -10.1354 7.6050 21 1 8.5755 -9.5879 8.9589 22 1 6.3544 -9.5000 9.9281 23 6 2.2234 -1.1097 -0.0005 24 8 1.7947 -2.2442 0.0068 25 1 -0.3632 -1.0277 -0.0005 26 1 -0.3633 0.5136 0.8902 27 1 -0.3633 0.5141 -0.8898 28 1 2.3305 1.6435 1.0004 29 1 1.8989 1.9393 -0.7102 30 1 4.4754 1.3010 0.0972 31 1 3.8274 0.8458 -1.5137 32 1 5.2902 -0.4605 1.4044 33 1 3.6599 -0.3962 2.1160 34 1 4.0263 -4.5345 3.3286 35 1 5.6569 -4.5981 2.6178 36 1 6.6085 -3.6945 4.7222 37 1 4.9776 -3.6312 5.4324 38 1 4.7570 -6.0840 5.1467 39 1 6.3879 -6.1481 4.4365 40 1 7.3402 -5.2448 6.5398 41 1 5.7096 -5.1805 7.2506 42 1 7.7632 -6.7527 9.8726 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000847799365.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:08 Heat of formation + Delta-G solvation = -142.768489 kcal Electronic energy + Delta-G solvation = -21593.078856 eV Core-core repulsion = 18151.502078 eV Total energy + Delta-G solvation = -3441.576778 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.08968 -40.18555 -36.91407 -36.60974 -34.93476 -33.80181 -32.64457 -30.10537 -29.16464 -27.33870 -26.12659 -24.95954 -22.64762 -21.97515 -20.50540 -19.98115 -19.86027 -17.67290 -17.09034 -16.98687 -16.66989 -16.15101 -15.89058 -15.62456 -14.83981 -14.43096 -14.27809 -14.15424 -13.84620 -13.31054 -13.09870 -13.00134 -12.73359 -12.61461 -12.45604 -12.20781 -11.96602 -11.71922 -11.61409 -11.47920 -10.99306 -10.83124 -10.55845 -10.51505 -10.42955 -10.32224 -10.02535 -9.61557 -9.25868 -9.15580 -8.98155 -8.29718 -5.94431 -3.96653 2.21065 2.32078 2.56151 2.61694 3.34696 3.41872 3.46347 3.79863 3.92505 4.17839 4.40782 4.50679 4.61978 4.75203 4.85362 4.90871 4.95782 5.02004 5.08505 5.23072 5.26880 5.32868 5.34228 5.36031 5.41291 5.46301 5.79584 6.05943 6.10584 6.23972 6.39966 6.51670 6.66858 6.80926 6.98794 7.19828 7.75128 7.82524 7.84494 7.89940 8.06835 8.48884 9.11192 9.67120 11.16994 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.039353 B = 0.002311 C = 0.002258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.336738 B =12110.785245 C =12396.723699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.629 5.629 3 C 0.100 3.900 4 C -0.125 4.125 5 C -0.125 4.125 6 H 0.120 0.880 7 C 0.083 3.917 8 O -0.352 6.352 9 C 0.462 3.538 10 O -0.508 6.508 11 C -0.112 4.112 12 C -0.108 4.108 13 C -0.110 4.110 14 C 0.019 3.981 15 C -0.519 4.519 16 H 0.056 0.944 17 C 0.054 3.946 18 N -0.896 5.896 19 Si 0.891 3.109 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.284 1.284 23 C 0.521 3.479 24 O -0.512 6.512 25 H 0.083 0.917 26 H 0.062 0.938 27 H 0.061 0.939 28 H 0.074 0.926 29 H 0.082 0.918 30 H 0.097 0.903 31 H 0.093 0.907 32 H 0.084 0.916 33 H 0.071 0.929 34 H 0.104 0.896 35 H 0.104 0.896 36 H 0.066 0.934 37 H 0.065 0.935 38 H 0.050 0.950 39 H 0.050 0.950 40 H 0.016 0.984 41 H 0.016 0.984 42 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.562 19.077 -22.560 31.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.365 5.365 3 C -0.023 4.023 4 C -0.163 4.163 5 C -0.146 4.146 6 H 0.138 0.862 7 C 0.008 3.992 8 O -0.269 6.269 9 C 0.305 3.695 10 O -0.395 6.395 11 C -0.149 4.149 12 C -0.145 4.145 13 C -0.148 4.148 14 C -0.018 4.018 15 C -0.557 4.557 16 H 0.074 0.926 17 C -0.146 4.146 18 N -0.535 5.535 19 Si 0.719 3.281 20 H -0.197 1.197 21 H -0.211 1.211 22 H -0.211 1.211 23 C 0.307 3.693 24 O -0.386 6.386 25 H 0.102 0.898 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.092 0.908 29 H 0.101 0.899 30 H 0.116 0.884 31 H 0.111 0.889 32 H 0.102 0.898 33 H 0.089 0.911 34 H 0.122 0.878 35 H 0.122 0.878 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.068 0.932 39 H 0.068 0.932 40 H 0.035 0.965 41 H 0.034 0.966 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -10.718 18.782 -22.175 30.973 hybrid contribution 0.072 -0.628 0.421 0.760 sum -10.646 18.153 -21.753 30.267 Atomic orbital electron populations 1.21574 0.77828 1.03978 1.01495 1.48192 1.06666 1.07298 1.74314 1.22137 0.90426 0.87484 1.02266 1.22637 0.97084 0.93425 1.03159 1.22017 0.95106 0.98863 0.98642 0.86210 1.22732 1.01664 0.80588 0.94171 1.86617 1.75652 1.27807 1.36866 1.24245 0.73027 0.93684 0.78496 1.90660 1.45577 1.50917 1.52373 1.21616 1.04868 0.88053 1.00404 1.21574 1.01114 0.99686 0.92151 1.21652 1.00539 0.92233 1.00364 1.19103 0.95956 0.96811 0.89885 1.21321 1.40802 0.92610 1.00990 0.92620 1.25046 0.95639 0.97228 0.96725 1.69986 1.42712 1.31827 1.09014 0.86545 0.77643 0.85376 0.78488 1.19742 1.21065 1.21058 1.20688 0.88648 0.84502 0.75432 1.90758 1.78147 1.20904 1.48756 0.89786 0.91976 0.92016 0.90781 0.89921 0.88405 0.88856 0.89756 0.91052 0.87790 0.87785 0.91554 0.91609 0.93172 0.93170 0.96541 0.96556 0.93114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.59 11.14 59.85 0.67 1.26 16 2 N -0.63 -5.00 3.33 -180.24 -0.60 -5.60 16 3 C 0.10 0.44 7.35 -3.09 -0.02 0.41 16 4 C -0.13 -0.49 6.71 -25.10 -0.17 -0.66 16 5 C -0.12 -1.00 3.21 -90.63 -0.29 -1.29 16 6 H 0.12 0.91 8.14 -51.92 -0.42 0.49 16 7 C 0.08 0.84 4.79 37.16 0.18 1.02 16 8 O -0.35 -4.83 10.13 -39.26 -0.40 -5.22 16 9 C 0.46 7.03 7.96 36.01 0.29 7.32 16 10 O -0.51 -8.96 15.73 -18.74 -0.29 -9.25 16 11 C -0.11 -1.63 5.81 -27.88 -0.16 -1.79 16 12 C -0.11 -1.94 4.50 -26.73 -0.12 -2.06 16 13 C -0.11 -2.30 5.15 -26.73 -0.14 -2.44 16 14 C 0.02 0.52 4.97 -27.88 -0.14 0.38 16 15 C -0.52 -15.07 9.11 -34.44 -0.31 -15.39 16 16 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 17 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 18 N -0.90 -27.66 13.29 55.43 0.74 -26.92 16 19 Si 0.89 22.10 29.54 -169.99 -5.02 17.08 16 20 H -0.27 -6.60 7.11 56.52 0.40 -6.19 16 21 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 22 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 23 C 0.52 5.78 7.25 -10.86 -0.08 5.70 16 24 O -0.51 -8.00 17.35 5.55 0.10 -7.91 16 25 H 0.08 0.67 7.53 -51.93 -0.39 0.28 16 26 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 27 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 28 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 29 H 0.08 0.20 8.14 -51.93 -0.42 -0.23 16 30 H 0.10 0.24 7.87 -51.93 -0.41 -0.17 16 31 H 0.09 0.24 8.14 -51.93 -0.42 -0.19 16 32 H 0.08 0.73 8.10 -51.93 -0.42 0.31 16 33 H 0.07 0.75 8.12 -51.93 -0.42 0.32 16 34 H 0.10 1.40 8.14 -51.93 -0.42 0.97 16 35 H 0.10 1.32 8.14 -51.93 -0.42 0.90 16 36 H 0.07 1.23 8.10 -51.93 -0.42 0.81 16 37 H 0.07 1.24 8.10 -51.93 -0.42 0.82 16 38 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 42 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 355.68 15.07 5.36 5.36 Total: -1.00 -36.69 355.68 -7.62 -44.31 By element: Atomic # 1 Polarization: 1.27 SS G_CDS: -7.10 Total: -5.83 kcal Atomic # 6 Polarization: -5.62 SS G_CDS: -0.40 Total: -6.02 kcal Atomic # 7 Polarization: -32.65 SS G_CDS: 0.14 Total: -32.52 kcal Atomic # 8 Polarization: -21.79 SS G_CDS: -0.60 Total: -22.38 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -36.69 -7.62 -44.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847799365.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.462 kcal (2) G-P(sol) polarization free energy of solvation -36.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds