Wall clock time and date at job start Tue Mar 31 2020 06:04:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.29181 * 125.35074 * 2 1 4 4 N 1.40277 * 107.87284 * 179.97438 * 3 2 1 5 5 C 1.46498 * 126.64174 * 180.02562 * 4 3 2 6 6 N 1.46908 * 109.46782 * 287.80063 * 5 4 3 7 7 C 1.46905 * 110.99957 * 100.23550 * 6 5 4 8 8 C 1.50693 * 109.46950 * 195.70846 * 7 6 5 9 9 H 1.08004 * 120.00141 * 5.02944 * 8 7 6 10 10 C 1.37883 * 120.00092 * 185.02659 * 8 7 6 11 11 N 1.31513 * 119.99558 * 0.02562 * 10 8 7 12 12 Si 1.86795 * 120.00114 * 180.02562 * 10 8 7 13 13 H 1.48504 * 109.47154 * 0.02562 * 12 10 8 14 14 H 1.48504 * 109.46928 * 120.00112 * 12 10 8 15 15 H 1.48498 * 109.47136 * 239.99816 * 12 10 8 16 16 C 1.46896 * 110.99985 * 224.18901 * 6 5 4 17 17 C 1.52999 * 109.47280 * 90.17062 * 16 6 5 18 18 C 1.53002 * 109.46751 * 64.51294 * 17 16 6 19 19 C 1.53002 * 109.47067 * 184.51261 * 17 16 6 20 20 C 1.52996 * 109.47415 * 304.51541 * 17 16 6 21 21 C 1.35037 * 106.71974 * 0.02562 * 4 3 2 22 22 O 1.21703 * 126.37132 * 180.26313 * 21 4 3 23 23 O 1.34309 * 107.25689 * 359.97438 * 21 4 3 24 24 H 1.09001 * 109.47290 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.47245 * 299.99729 * 1 2 3 26 26 H 1.08998 * 109.47435 * 59.99913 * 1 2 3 27 27 H 1.09001 * 109.47237 * 47.79456 * 5 4 3 28 28 H 1.08992 * 109.47234 * 167.80314 * 5 4 3 29 29 H 1.09000 * 109.46638 * 315.71124 * 7 6 5 30 30 H 1.08993 * 109.47024 * 75.70608 * 7 6 5 31 31 H 0.96996 * 119.99578 * 179.97438 * 11 10 8 32 32 H 1.08998 * 109.47120 * 210.17702 * 16 6 5 33 33 H 1.09009 * 109.47277 * 330.17245 * 16 6 5 34 34 H 1.09007 * 109.47250 * 64.77944 * 18 17 16 35 35 H 1.09002 * 109.47075 * 184.77701 * 18 17 16 36 36 H 1.08997 * 109.47104 * 304.78041 * 18 17 16 37 37 H 1.08995 * 109.47513 * 60.00159 * 19 17 16 38 38 H 1.09001 * 109.46820 * 180.02562 * 19 17 16 39 39 H 1.09006 * 109.46908 * 299.99621 * 19 17 16 40 40 H 1.09000 * 109.47508 * 79.46221 * 20 17 16 41 41 H 1.09004 * 109.47201 * 199.46624 * 20 17 16 42 42 H 1.09007 * 109.46758 * 319.46480 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2545 1.0536 0.0000 4 7 3.5925 0.6323 0.0006 5 6 4.7794 1.4910 0.0013 6 7 4.9286 2.1212 -1.3173 7 6 4.4294 3.5027 -1.2999 8 6 4.2361 3.9847 -2.7146 9 1 4.3832 3.3055 -3.5414 10 6 3.8712 5.2927 -2.9535 11 7 3.6925 6.1198 -1.9467 12 14 3.6308 5.8900 -4.7070 13 1 3.8903 4.7728 -5.6504 14 1 2.2359 6.3693 -4.8798 15 1 4.5744 7.0024 -4.9848 16 6 6.3254 2.0718 -1.7693 17 6 6.5587 0.7863 -2.5655 18 6 5.7109 0.8142 -3.8388 19 6 8.0383 0.6798 -2.9401 20 6 6.1601 -0.4206 -1.7138 21 6 3.5746 -0.7179 0.0004 22 8 4.5449 -1.4525 0.0052 23 8 2.2868 -1.0994 0.0002 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 4.6688 2.2632 0.7626 28 1 5.6624 0.8901 0.2188 29 1 3.4773 3.5383 -0.7705 30 1 5.1510 4.1434 -0.7932 31 1 3.4362 7.0401 -2.1148 32 1 6.5330 2.9343 -2.4027 33 1 6.9882 2.0886 -0.9041 34 1 6.0518 1.6234 -4.4848 35 1 5.8114 -0.1361 -4.3632 36 1 4.6655 0.9753 -3.5758 37 1 8.6423 0.6600 -2.0331 38 1 8.2044 -0.2358 -3.5077 39 1 8.3222 1.5397 -3.5471 40 1 5.0766 -0.5378 -1.7342 41 1 6.6304 -1.3188 -2.1139 42 1 6.4894 -0.2648 -0.6864 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000853494083.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:24 Heat of formation + Delta-G solvation = 0.988453 kcal Electronic energy + Delta-G solvation = -24116.433915 eV Core-core repulsion = 20713.383657 eV Total energy + Delta-G solvation = -3403.050258 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.168 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.04904 -38.55129 -37.47943 -35.81022 -34.43638 -32.76264 -32.12065 -29.20161 -27.33152 -26.77956 -26.54137 -25.96104 -23.91710 -22.59314 -21.81410 -20.69496 -18.35031 -17.56595 -17.36236 -16.41763 -15.97714 -15.64048 -14.94535 -14.63647 -14.47319 -14.05726 -14.03393 -13.81092 -13.35963 -13.16519 -12.83130 -12.37260 -12.22590 -12.03097 -11.96442 -11.85022 -11.59388 -11.45509 -11.18369 -11.02587 -10.94608 -10.86989 -10.68004 -10.48167 -10.18219 -10.05254 -9.85059 -9.70819 -9.24513 -8.62371 -8.44426 -7.51356 -6.04814 -4.05292 1.87541 2.02977 2.55675 2.93745 3.28531 3.36635 3.41380 4.29960 4.41268 4.81835 4.98976 5.19539 5.28940 5.30816 5.32741 5.37734 5.47397 5.54735 5.61723 5.72218 5.86601 5.91328 6.01200 6.10294 6.21535 6.27378 6.34102 6.37874 6.43504 6.59435 6.65972 6.74793 6.97459 7.03776 7.18550 7.24354 7.71817 7.77573 7.92764 8.03878 8.08159 8.43812 9.02959 9.58658 11.05743 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.013080 B = 0.007104 C = 0.005233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2140.195695 B = 3940.465042 C = 5348.956830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C 0.213 3.787 3 N -0.238 5.238 4 N -0.429 5.429 5 C 0.306 3.694 6 N -0.541 5.541 7 C 0.194 3.806 8 C -0.502 4.502 9 H 0.066 0.934 10 C 0.056 3.944 11 N -0.897 5.897 12 Si 0.894 3.106 13 H -0.272 1.272 14 H -0.285 1.285 15 H -0.285 1.285 16 C 0.077 3.923 17 C -0.070 4.070 18 C -0.126 4.126 19 C -0.138 4.138 20 C -0.123 4.123 21 C 0.600 3.400 22 O -0.492 6.492 23 O -0.283 6.283 24 H 0.093 0.907 25 H 0.101 0.899 26 H 0.103 0.897 27 H 0.074 0.926 28 H 0.105 0.895 29 H 0.036 0.964 30 H -0.002 1.002 31 H 0.260 0.740 32 H 0.089 0.911 33 H 0.028 0.972 34 H 0.048 0.952 35 H 0.035 0.965 36 H 0.069 0.931 37 H 0.048 0.952 38 H 0.049 0.951 39 H 0.053 0.947 40 H 0.060 0.940 41 H 0.039 0.961 42 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.617 -10.942 3.743 11.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.014 4.014 3 N -0.067 5.067 4 N -0.262 5.262 5 C 0.096 3.904 6 N -0.266 5.266 7 C 0.070 3.930 8 C -0.541 4.541 9 H 0.084 0.916 10 C -0.145 4.145 11 N -0.537 5.537 12 Si 0.722 3.278 13 H -0.197 1.197 14 H -0.211 1.211 15 H -0.212 1.212 16 C -0.051 4.051 17 C -0.070 4.070 18 C -0.183 4.183 19 C -0.196 4.196 20 C -0.180 4.180 21 C 0.352 3.648 22 O -0.375 6.375 23 O -0.180 6.180 24 H 0.111 0.889 25 H 0.120 0.880 26 H 0.122 0.878 27 H 0.092 0.908 28 H 0.123 0.877 29 H 0.054 0.946 30 H 0.016 0.984 31 H 0.070 0.930 32 H 0.107 0.893 33 H 0.047 0.953 34 H 0.068 0.932 35 H 0.054 0.946 36 H 0.088 0.912 37 H 0.067 0.933 38 H 0.069 0.931 39 H 0.072 0.928 40 H 0.078 0.922 41 H 0.058 0.942 42 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -1.315 -10.663 3.449 11.284 hybrid contribution 0.334 0.239 -0.479 0.631 sum -0.981 -10.423 2.971 10.883 Atomic orbital electron populations 1.20391 0.80472 1.05186 1.05701 1.26450 0.96825 0.79062 0.99061 1.77269 0.89092 1.21630 1.18688 1.50617 1.04036 1.04926 1.66668 1.22201 0.82447 0.92291 0.93455 1.61349 1.19556 1.23121 1.22544 1.19914 0.95030 0.79853 0.98184 1.21183 1.45653 0.95008 0.92216 0.91568 1.24958 0.95737 0.96776 0.97022 1.69962 1.48086 1.05367 1.30309 0.86502 0.77679 0.78671 0.84941 1.19704 1.21111 1.21176 1.22115 0.87114 0.98166 0.97711 1.20670 0.94303 0.95668 0.96386 1.21717 1.01425 0.99437 0.95761 1.21855 0.95847 1.01178 1.00699 1.22056 1.01905 0.95888 0.98197 1.19390 0.81791 0.83781 0.79857 1.91186 1.30909 1.58782 1.56630 1.85088 1.18548 1.35509 1.78847 0.88863 0.88040 0.87815 0.90782 0.87729 0.94592 0.98378 0.93042 0.89289 0.95349 0.93243 0.94639 0.91176 0.93285 0.93145 0.92820 0.92150 0.94174 0.93426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.48 10.51 36.01 0.38 -0.10 16 2 C 0.21 2.98 8.36 -13.39 -0.11 2.87 16 3 N -0.24 -4.17 12.55 32.46 0.41 -3.76 16 4 N -0.43 -7.80 3.79 -68.29 -0.26 -8.06 16 5 C 0.31 5.51 5.35 -63.31 -0.34 5.17 16 6 N -0.54 -11.01 3.58 -239.98 -0.86 -11.87 16 7 C 0.19 4.77 4.37 -4.98 -0.02 4.75 16 8 C -0.50 -13.46 8.33 -34.44 -0.29 -13.75 16 9 H 0.07 1.79 7.36 -52.48 -0.39 1.40 16 10 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 11 N -0.90 -25.87 13.29 55.43 0.74 -25.13 16 12 Si 0.89 21.30 29.54 -169.99 -5.02 16.28 16 13 H -0.27 -6.42 7.11 56.52 0.40 -6.01 16 14 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 15 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 16 C 0.08 1.42 3.87 -3.83 -0.01 1.40 16 17 C -0.07 -1.16 0.85 -154.51 -0.13 -1.29 16 18 C -0.13 -2.25 8.06 37.16 0.30 -1.95 16 19 C -0.14 -1.95 8.39 37.16 0.31 -1.64 16 20 C -0.12 -2.09 5.61 37.16 0.21 -1.89 16 21 C 0.60 10.81 7.96 54.17 0.43 11.24 16 22 O -0.49 -9.49 14.13 -19.00 -0.27 -9.76 16 23 O -0.28 -4.50 10.71 -19.82 -0.21 -4.71 16 24 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 27 H 0.07 1.31 7.65 -51.93 -0.40 0.92 16 28 H 0.11 1.74 4.71 -51.93 -0.24 1.49 16 29 H 0.04 0.96 8.00 -51.93 -0.42 0.55 16 30 H 0.00 -0.04 8.06 -51.93 -0.42 -0.46 16 31 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 32 H 0.09 1.83 7.04 -51.93 -0.37 1.46 16 33 H 0.03 0.48 7.55 -51.92 -0.39 0.08 16 34 H 0.05 0.89 8.14 -51.92 -0.42 0.46 16 35 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.07 1.44 7.42 -51.93 -0.39 1.05 16 37 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.05 0.66 8.13 -51.93 -0.42 0.24 16 39 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 40 H 0.06 1.15 4.80 -51.93 -0.25 0.90 16 41 H 0.04 0.65 7.98 -51.93 -0.41 0.23 16 42 H 0.05 0.80 5.48 -51.92 -0.28 0.51 16 LS Contribution 335.51 15.07 5.06 5.06 Total: -1.00 -31.14 335.51 -6.26 -37.40 By element: Atomic # 1 Polarization: 4.75 SS G_CDS: -6.47 Total: -1.72 kcal Atomic # 6 Polarization: 5.65 SS G_CDS: 0.63 Total: 6.27 kcal Atomic # 7 Polarization: -48.84 SS G_CDS: 0.03 Total: -48.82 kcal Atomic # 8 Polarization: -13.99 SS G_CDS: -0.48 Total: -14.47 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -31.14 -6.26 -37.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853494083.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.386 kcal (2) G-P(sol) polarization free energy of solvation -31.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.398 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds