Wall clock time and date at job start Tue Mar 31 2020 05:21:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.20830 * 120.00175 * 2 1 4 4 O 1.34226 * 120.00220 * 180.02562 * 2 1 3 5 5 C 1.45194 * 117.00534 * 179.97438 * 4 2 1 6 6 C 1.52996 * 109.47231 * 59.99704 * 5 4 2 7 7 C 1.53007 * 109.47147 * 299.99710 * 5 4 2 8 8 C 1.50699 * 109.47438 * 179.97438 * 5 4 2 9 9 O 1.21277 * 120.00270 * 135.39319 * 8 5 4 10 10 N 1.34775 * 120.00093 * 315.39001 * 8 5 4 11 11 C 1.46925 * 120.62809 * 354.47168 * 10 8 5 12 12 C 1.53189 * 108.77867 * 126.36499 * 11 10 8 13 13 C 1.53041 * 109.31125 * 54.63412 * 12 11 10 14 14 C 1.53045 * 109.53806 * 298.63621 * 13 12 11 15 15 H 1.08991 * 109.49556 * 301.41257 * 14 13 12 16 16 C 1.50705 * 109.49685 * 181.31490 * 14 13 12 17 17 H 1.08000 * 119.99817 * 275.19443 * 16 14 13 18 18 C 1.37872 * 119.99500 * 95.19388 * 16 14 13 19 19 N 1.31519 * 119.99653 * 184.63510 * 18 16 14 20 20 Si 1.86796 * 120.00588 * 4.63561 * 18 16 14 21 21 H 1.48499 * 109.47118 * 84.94228 * 20 18 16 22 22 H 1.48504 * 109.47421 * 204.94188 * 20 18 16 23 23 H 1.48497 * 109.47170 * 324.94100 * 20 18 16 24 24 C 1.46924 * 120.63286 * 174.44559 * 10 8 5 25 25 H 1.08992 * 109.47008 * 179.97438 * 1 2 3 26 26 H 1.09006 * 109.46885 * 299.99342 * 1 2 3 27 27 H 1.09001 * 109.47436 * 59.98999 * 1 2 3 28 28 H 1.09007 * 109.47610 * 184.69379 * 6 5 4 29 29 H 1.09001 * 109.47269 * 304.69537 * 6 5 4 30 30 H 1.09001 * 109.47335 * 64.68823 * 6 5 4 31 31 H 1.08997 * 109.46833 * 306.68466 * 7 5 4 32 32 H 1.09005 * 109.46568 * 66.67909 * 7 5 4 33 33 H 1.08994 * 109.47153 * 186.67833 * 7 5 4 34 34 H 1.09005 * 109.58745 * 246.15432 * 11 10 8 35 35 H 1.09008 * 109.59123 * 6.57982 * 11 10 8 36 36 H 1.09001 * 109.50225 * 174.58427 * 12 11 10 37 37 H 1.09003 * 109.50048 * 294.68280 * 12 11 10 38 38 H 1.09006 * 109.46337 * 178.61561 * 13 12 11 39 39 H 1.09001 * 109.45451 * 58.64879 * 13 12 11 40 40 H 0.96998 * 120.00442 * 180.02562 * 19 18 16 41 41 H 1.09000 * 109.58597 * 353.41741 * 24 10 8 42 42 H 1.09002 * 109.58693 * 113.70804 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1112 1.0464 0.0000 4 8 2.1781 -1.1624 -0.0005 5 6 3.6281 -1.0865 -0.0011 6 6 4.1002 -0.3398 1.2481 7 6 4.0992 -0.3393 -1.2504 8 6 4.2041 -2.4791 -0.0010 9 8 5.1266 -2.7538 -0.7388 10 7 3.6941 -3.4192 0.8191 11 6 2.6597 -3.0727 1.8033 12 6 1.4639 -4.0111 1.6129 13 6 1.9426 -5.4627 1.6888 14 6 2.9490 -5.7291 0.5671 15 1 2.4806 -5.5302 -0.3967 16 6 3.3954 -7.1674 0.6229 17 1 4.2028 -7.4572 1.2791 18 6 2.7730 -8.1133 -0.1638 19 7 3.0997 -9.3821 -0.0491 20 14 1.4658 -7.5929 -1.3925 21 1 2.1166 -7.1725 -2.6593 22 1 0.5545 -8.7347 -1.6593 23 1 0.6870 -6.4577 -0.8356 24 6 4.1617 -4.8101 0.7456 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5140 -0.8899 28 1 5.1817 -0.2096 1.2067 29 1 3.6181 0.6368 1.2915 30 1 3.8371 -0.9145 2.1361 31 1 3.6648 -0.8026 -2.1362 32 1 3.7819 0.7019 -1.1923 33 1 5.1865 -0.3849 -1.3126 34 1 3.0596 -3.1900 2.8105 35 1 2.3421 -2.0409 1.6519 36 1 0.7297 -3.8286 2.3976 37 1 1.0093 -3.8283 0.6392 38 1 1.0898 -6.1326 1.5783 39 1 2.4192 -5.6378 2.6534 40 1 2.6622 -10.0476 -0.6028 41 1 4.8352 -4.9248 -0.1037 42 1 4.6862 -5.0684 1.6655 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000855255944.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:38 Heat of formation + Delta-G solvation = -122.751210 kcal Electronic energy + Delta-G solvation = -24228.631350 eV Core-core repulsion = 20787.922586 eV Total energy + Delta-G solvation = -3440.708764 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.34376 -39.58476 -37.18405 -36.70250 -33.56992 -33.10650 -31.77589 -30.57375 -30.14628 -27.53592 -25.76956 -25.09783 -23.31372 -21.73413 -20.98655 -19.62505 -18.79057 -17.70092 -17.23458 -16.82510 -16.52128 -15.74239 -15.12101 -14.85360 -14.40135 -13.97029 -13.85257 -13.82027 -13.64012 -13.02980 -12.89817 -12.80953 -12.62727 -12.52897 -12.33666 -12.25417 -12.10442 -11.89069 -11.56540 -11.26206 -11.12792 -10.84851 -10.58748 -10.49168 -10.35898 -10.04270 -9.85626 -9.63791 -9.38764 -9.01730 -8.57456 -8.12591 -6.12129 -4.12255 1.96625 2.18295 3.04644 3.26674 3.30921 3.35646 3.37470 4.38608 4.39160 4.42831 4.66616 4.74781 4.93359 5.01534 5.16023 5.27446 5.36008 5.42002 5.45900 5.47907 5.64598 5.67884 5.78379 5.87536 5.93941 6.04774 6.12108 6.17253 6.21344 6.30375 6.42744 6.56062 6.67462 6.81993 6.89007 7.23986 7.37902 7.56441 7.70516 7.76592 8.35576 8.46459 8.92234 9.50744 11.00823 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.022225 B = 0.005509 C = 0.005163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.550178 B = 5081.058927 C = 5422.289256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.460 3.540 3 O -0.510 6.510 4 O -0.337 6.337 5 C 0.107 3.893 6 C -0.183 4.183 7 C -0.164 4.164 8 C 0.526 3.474 9 O -0.532 6.532 10 N -0.593 5.593 11 C 0.101 3.899 12 C -0.135 4.135 13 C -0.112 4.112 14 C 0.007 3.993 15 H 0.035 0.965 16 C -0.513 4.513 17 H 0.075 0.925 18 C 0.075 3.925 19 N -0.897 5.897 20 Si 0.876 3.124 21 H -0.276 1.276 22 H -0.290 1.290 23 H -0.264 1.264 24 C 0.121 3.879 25 H 0.093 0.907 26 H 0.105 0.895 27 H 0.104 0.896 28 H 0.079 0.921 29 H 0.093 0.907 30 H 0.070 0.930 31 H 0.065 0.935 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.062 0.938 35 H 0.090 0.910 36 H 0.061 0.939 37 H 0.062 0.938 38 H 0.056 0.944 39 H 0.054 0.946 40 H 0.264 0.736 41 H 0.085 0.915 42 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.020 19.259 3.032 20.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.304 3.696 3 O -0.398 6.398 4 O -0.254 6.254 5 C 0.067 3.933 6 C -0.240 4.240 7 C -0.222 4.222 8 C 0.312 3.688 9 O -0.409 6.409 10 N -0.324 5.324 11 C -0.022 4.022 12 C -0.173 4.173 13 C -0.151 4.151 14 C -0.013 4.013 15 H 0.053 0.947 16 C -0.551 4.551 17 H 0.093 0.907 18 C -0.128 4.128 19 N -0.535 5.535 20 Si 0.704 3.296 21 H -0.202 1.202 22 H -0.216 1.216 23 H -0.189 1.189 24 C 0.001 3.999 25 H 0.112 0.888 26 H 0.123 0.877 27 H 0.123 0.877 28 H 0.098 0.902 29 H 0.112 0.888 30 H 0.089 0.911 31 H 0.084 0.916 32 H 0.104 0.896 33 H 0.102 0.898 34 H 0.080 0.920 35 H 0.108 0.892 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.074 0.926 39 H 0.073 0.927 40 H 0.074 0.926 41 H 0.104 0.896 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -5.341 19.177 2.584 20.074 hybrid contribution -0.723 0.077 -0.621 0.956 sum -6.064 19.255 1.963 20.282 Atomic orbital electron populations 1.21644 0.87235 1.06105 1.05725 1.23842 0.92077 0.81722 0.71959 1.90602 1.70458 1.33327 1.45453 1.86740 1.21002 1.34711 1.82950 1.22419 0.76679 0.95207 0.98946 1.22553 1.03564 1.02309 0.95563 1.22249 1.03600 1.01101 0.95202 1.19834 0.83499 0.84992 0.80525 1.90715 1.29214 1.79682 1.41307 1.48352 1.38630 1.10056 1.35345 1.22032 0.88710 1.00058 0.91366 1.21984 0.96462 0.97321 1.01556 1.21850 0.99891 0.92701 1.00626 1.19459 0.91801 0.95273 0.94767 0.94720 1.20861 1.19632 0.89497 1.25099 0.90697 1.25026 0.96369 0.94736 0.96641 1.69899 1.42944 1.00625 1.40012 0.86870 0.82243 0.78182 0.82313 1.20180 1.21605 1.18889 1.22063 0.98739 0.76862 1.02274 0.88808 0.87691 0.87745 0.90201 0.88840 0.91135 0.91563 0.89644 0.89779 0.91997 0.89231 0.92027 0.91970 0.92553 0.92703 0.92566 0.89631 0.91988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 10.42 36.00 0.38 -0.61 16 2 C 0.46 4.99 7.36 36.00 0.27 5.26 16 3 O -0.51 -6.48 12.65 -18.75 -0.24 -6.72 16 4 O -0.34 -4.36 7.05 -39.25 -0.28 -4.64 16 5 C 0.11 1.51 0.67 -91.77 -0.06 1.45 16 6 C -0.18 -2.16 8.09 37.16 0.30 -1.86 16 7 C -0.16 -2.23 7.82 37.16 0.29 -1.94 16 8 C 0.53 9.36 6.68 -10.99 -0.07 9.29 16 9 O -0.53 -11.13 15.29 5.56 0.09 -11.05 16 10 N -0.59 -10.49 2.97 -172.77 -0.51 -11.00 16 11 C 0.10 1.45 4.90 -3.71 -0.02 1.43 16 12 C -0.14 -2.07 6.08 -26.61 -0.16 -2.23 16 13 C -0.11 -2.19 5.15 -26.69 -0.14 -2.33 16 14 C 0.01 0.15 1.91 -91.65 -0.17 -0.02 16 15 H 0.03 0.83 5.30 -51.93 -0.28 0.56 16 16 C -0.51 -13.94 8.86 -34.44 -0.31 -14.24 16 17 H 0.07 2.20 8.06 -52.49 -0.42 1.78 16 18 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 19 N -0.90 -26.99 13.96 55.43 0.77 -26.22 16 20 Si 0.88 21.44 26.99 -169.99 -4.59 16.85 16 21 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 22 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 23 H -0.26 -6.11 6.82 56.52 0.39 -5.73 16 24 C 0.12 2.51 5.68 -3.71 -0.02 2.49 16 25 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.09 1.08 5.78 -51.93 -0.30 0.78 16 30 H 0.07 0.78 6.24 -51.93 -0.32 0.45 16 31 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.08 1.09 6.09 -51.93 -0.32 0.78 16 33 H 0.08 1.15 7.69 -51.93 -0.40 0.75 16 34 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.09 1.12 3.71 -51.92 -0.19 0.93 16 36 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 38 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 39 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 40 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 41 H 0.09 1.94 7.04 -51.93 -0.37 1.58 16 42 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 LS Contribution 326.80 15.07 4.92 4.92 Total: -1.00 -32.27 326.80 -6.05 -38.32 By element: Atomic # 1 Polarization: 7.22 SS G_CDS: -6.40 Total: 0.83 kcal Atomic # 6 Polarization: -1.49 SS G_CDS: 0.18 Total: -1.31 kcal Atomic # 7 Polarization: -37.48 SS G_CDS: 0.26 Total: -37.22 kcal Atomic # 8 Polarization: -21.97 SS G_CDS: -0.43 Total: -22.40 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -4.59 Total: 16.85 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -32.27 -6.05 -38.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855255944.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.429 kcal (2) G-P(sol) polarization free energy of solvation -32.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds