Wall clock time and date at job start Tue Mar 31 2020 05:21:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.20825 * 120.00030 * 2 1 4 4 O 1.34229 * 120.00042 * 179.97438 * 2 1 3 5 5 C 1.45201 * 117.00088 * 180.02562 * 4 2 1 6 6 C 1.52999 * 109.47234 * 59.99484 * 5 4 2 7 7 C 1.53007 * 109.46881 * 299.99861 * 5 4 2 8 8 C 1.50702 * 109.47548 * 180.02562 * 5 4 2 9 9 O 1.21283 * 119.99508 * 6.25509 * 8 5 4 10 10 N 1.34766 * 120.00136 * 186.26392 * 8 5 4 11 11 C 1.46928 * 120.63292 * 354.80404 * 10 8 5 12 12 C 1.53196 * 108.77450 * 233.63174 * 11 10 8 13 13 C 1.53038 * 109.31491 * 305.36498 * 12 11 10 14 14 C 1.53042 * 109.53859 * 61.36405 * 13 12 11 15 15 H 1.09000 * 109.49402 * 58.58726 * 14 13 12 16 16 C 1.50699 * 109.49561 * 178.68195 * 14 13 12 17 17 H 1.08004 * 119.99593 * 120.00458 * 16 14 13 18 18 C 1.37877 * 120.00134 * 300.00198 * 16 14 13 19 19 N 1.31509 * 120.00169 * 0.02562 * 18 16 14 20 20 Si 1.86798 * 119.99503 * 180.02562 * 18 16 14 21 21 H 1.48492 * 109.47427 * 60.00322 * 20 18 16 22 22 H 1.48511 * 109.46909 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.47553 * 299.99612 * 20 18 16 24 24 C 1.46928 * 120.62968 * 174.82755 * 10 8 5 25 25 H 1.08994 * 109.47092 * 240.00014 * 1 2 3 26 26 H 1.08998 * 109.47435 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.46942 * 120.00592 * 1 2 3 28 28 H 1.09006 * 109.46837 * 187.96673 * 6 5 4 29 29 H 1.08993 * 109.47193 * 307.96942 * 6 5 4 30 30 H 1.09003 * 109.46689 * 67.97463 * 6 5 4 31 31 H 1.09004 * 109.46859 * 316.65005 * 7 5 4 32 32 H 1.08998 * 109.47248 * 76.64606 * 7 5 4 33 33 H 1.08998 * 109.47335 * 196.65142 * 7 5 4 34 34 H 1.08994 * 109.58532 * 353.41758 * 11 10 8 35 35 H 1.08996 * 109.58627 * 113.70527 * 11 10 8 36 36 H 1.08996 * 109.49513 * 185.40727 * 12 11 10 37 37 H 1.09003 * 109.49238 * 65.31682 * 12 11 10 38 38 H 1.08994 * 109.45631 * 301.34563 * 13 12 11 39 39 H 1.09000 * 109.46021 * 181.38548 * 13 12 11 40 40 H 0.96998 * 119.99802 * 180.02562 * 19 18 16 41 41 H 1.08999 * 109.59015 * 6.58105 * 24 10 8 42 42 H 1.08997 * 109.58982 * 246.15002 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1111 1.0464 0.0000 4 8 2.1781 -1.1625 0.0005 5 6 3.6282 -1.0865 0.0011 6 6 4.0993 -0.3391 1.2502 7 6 4.1002 -0.3398 -1.2483 8 6 4.2043 -2.4790 0.0010 9 8 3.4713 -3.4384 -0.1140 10 7 5.5338 -2.6582 0.1287 11 6 6.4454 -1.5062 0.1550 12 6 7.5256 -1.7079 -0.9125 13 6 8.2118 -3.0575 -0.6897 14 6 7.1834 -4.1830 -0.8245 15 1 6.7285 -4.1433 -1.8142 16 6 7.8662 -5.5132 -0.6369 17 1 7.5570 -6.1710 0.1619 18 6 8.8856 -5.8906 -1.4851 19 7 9.2625 -5.0894 -2.4576 20 14 9.7314 -7.5399 -1.2529 21 1 8.7329 -8.6311 -1.3844 22 1 10.7844 -7.7060 -2.2869 23 1 10.3490 -7.5939 0.0965 24 6 6.0994 -4.0094 0.2440 25 1 -0.3633 -0.5138 0.8899 26 1 -0.3634 1.0276 -0.0005 27 1 -0.3633 -0.5139 -0.8900 28 1 5.1720 -0.1578 1.1822 29 1 3.5737 0.6129 1.3239 30 1 3.8878 -0.9403 2.1346 31 1 3.5343 -0.6853 -2.1135 32 1 3.9412 0.7301 -1.1138 33 1 5.1611 -0.5324 -1.4075 34 1 5.8878 -0.5941 -0.0573 35 1 6.9100 -1.4302 1.1380 36 1 8.2629 -0.9084 -0.8395 37 1 7.0673 -1.6916 -1.9013 38 1 8.6485 -3.0824 0.3087 39 1 8.9975 -3.1926 -1.4330 40 1 9.9794 -5.3551 -3.0545 41 1 5.3135 -4.7489 0.0905 42 1 6.5377 -4.1389 1.2335 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000855255945.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:41 Heat of formation + Delta-G solvation = -109.682419 kcal Electronic energy + Delta-G solvation = -23823.883926 eV Core-core repulsion = 20383.741868 eV Total energy + Delta-G solvation = -3440.142058 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.21271 -39.61793 -37.02185 -36.38009 -34.37351 -32.84004 -31.35716 -30.40931 -29.71888 -27.57435 -25.45822 -25.13131 -23.32234 -21.78857 -20.91980 -19.76571 -18.58833 -17.16382 -16.99589 -16.43099 -16.29262 -16.01420 -15.01306 -14.90160 -14.56872 -14.16784 -13.80664 -13.54731 -13.36209 -12.93202 -12.89111 -12.84906 -12.68127 -12.34130 -12.26202 -12.07902 -11.92367 -11.55141 -11.42571 -10.97589 -10.84556 -10.74384 -10.63854 -10.44111 -10.28950 -9.94320 -9.80660 -9.49197 -9.21010 -8.85283 -8.41383 -7.97897 -6.04219 -4.11588 2.07116 2.38584 2.88630 3.30244 3.34762 3.37479 3.54299 4.39905 4.41966 4.57493 4.62958 4.79255 4.97917 5.07411 5.17882 5.26627 5.37206 5.39991 5.51498 5.56976 5.60280 5.66406 5.87123 5.97340 6.04847 6.10406 6.27318 6.31984 6.39675 6.43074 6.60636 6.74915 6.89100 7.11356 7.27965 7.65654 7.66234 7.83785 7.93068 8.04121 8.33393 8.51002 8.91542 9.53448 11.01264 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.036291 B = 0.004095 C = 0.003893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.346430 B = 6836.059749 C = 7189.980185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.460 3.540 3 O -0.512 6.512 4 O -0.327 6.327 5 C 0.109 3.891 6 C -0.194 4.194 7 C -0.188 4.188 8 C 0.522 3.478 9 O -0.529 6.529 10 N -0.594 5.594 11 C 0.084 3.916 12 C -0.137 4.137 13 C -0.112 4.112 14 C 0.040 3.960 15 H 0.030 0.970 16 C -0.516 4.516 17 H 0.057 0.943 18 C 0.064 3.936 19 N -0.889 5.889 20 Si 0.894 3.106 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.277 1.277 24 C 0.118 3.882 25 H 0.099 0.901 26 H 0.100 0.900 27 H 0.100 0.900 28 H 0.094 0.906 29 H 0.090 0.910 30 H 0.066 0.934 31 H 0.069 0.931 32 H 0.089 0.911 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.066 0.934 36 H 0.059 0.941 37 H 0.059 0.941 38 H 0.036 0.964 39 H 0.097 0.903 40 H 0.261 0.739 41 H 0.080 0.920 42 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.921 12.618 5.071 17.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.304 3.696 3 O -0.402 6.402 4 O -0.243 6.243 5 C 0.069 3.931 6 C -0.251 4.251 7 C -0.245 4.245 8 C 0.307 3.693 9 O -0.405 6.405 10 N -0.327 5.327 11 C -0.038 4.038 12 C -0.175 4.175 13 C -0.150 4.150 14 C 0.021 3.979 15 H 0.048 0.952 16 C -0.554 4.554 17 H 0.075 0.925 18 C -0.137 4.137 19 N -0.527 5.527 20 Si 0.722 3.278 21 H -0.202 1.202 22 H -0.213 1.213 23 H -0.202 1.202 24 C -0.002 4.002 25 H 0.118 0.882 26 H 0.119 0.881 27 H 0.118 0.882 28 H 0.112 0.888 29 H 0.109 0.891 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.108 0.892 33 H 0.110 0.890 34 H 0.109 0.891 35 H 0.085 0.915 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.055 0.945 39 H 0.115 0.885 40 H 0.071 0.929 41 H 0.099 0.901 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -10.964 12.383 4.865 17.240 hybrid contribution 0.664 -0.797 0.056 1.039 sum -10.300 11.585 4.922 16.264 Atomic orbital electron populations 1.21648 0.87197 1.05660 1.05913 1.23818 0.92123 0.81661 0.72018 1.90604 1.70552 1.33349 1.45647 1.86621 1.20282 1.34210 1.83187 1.21980 0.77621 0.95145 0.98325 1.22861 1.04385 1.02015 0.95865 1.22723 1.03751 1.02256 0.95805 1.19720 0.82815 0.89108 0.77614 1.90694 1.58764 1.41921 1.49114 1.48110 1.04338 1.09241 1.71039 1.22430 0.92437 0.88631 1.00343 1.22043 0.97022 1.00580 0.97833 1.21636 1.00812 0.91201 1.01393 1.18976 0.90862 0.94372 0.93673 0.95170 1.21026 1.17784 1.01877 1.14730 0.92487 1.24928 0.96803 0.97078 0.94936 1.69855 1.29311 1.36196 1.17373 0.86629 0.79167 0.84265 0.77772 1.20212 1.21310 1.20247 1.22071 0.97548 0.80125 1.00445 0.88218 0.88115 0.88152 0.88768 0.89108 0.91498 0.91174 0.89189 0.89010 0.89144 0.91532 0.92198 0.92248 0.94476 0.88513 0.92889 0.90126 0.92350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 10.43 36.00 0.38 -0.70 16 2 C 0.46 5.61 7.35 36.00 0.26 5.87 16 3 O -0.51 -7.02 12.79 -18.75 -0.24 -7.26 16 4 O -0.33 -4.95 9.43 -45.88 -0.43 -5.39 16 5 C 0.11 1.66 0.85 -91.77 -0.08 1.59 16 6 C -0.19 -2.48 7.96 37.16 0.30 -2.18 16 7 C -0.19 -2.58 7.56 37.16 0.28 -2.30 16 8 C 0.52 9.86 6.54 -10.99 -0.07 9.79 16 9 O -0.53 -11.96 15.93 -14.02 -0.22 -12.18 16 10 N -0.59 -10.94 2.96 -172.77 -0.51 -11.46 16 11 C 0.08 1.27 3.93 -3.71 -0.01 1.26 16 12 C -0.14 -2.35 5.90 -26.61 -0.16 -2.51 16 13 C -0.11 -2.46 4.96 -26.69 -0.13 -2.59 16 14 C 0.04 0.98 2.25 -91.65 -0.21 0.77 16 15 H 0.03 0.83 8.14 -51.93 -0.42 0.40 16 16 C -0.52 -13.80 8.56 -34.44 -0.29 -14.09 16 17 H 0.06 1.50 7.74 -52.48 -0.41 1.10 16 18 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 19 N -0.89 -24.67 11.31 55.43 0.63 -24.05 16 20 Si 0.89 20.93 29.54 -169.99 -5.02 15.91 16 21 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 22 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 23 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 24 C 0.12 2.53 5.66 -3.71 -0.02 2.51 16 25 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.10 0.58 8.12 -51.93 -0.42 0.16 16 27 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.09 1.07 4.70 -51.93 -0.24 0.82 16 29 H 0.09 1.14 5.72 -51.93 -0.30 0.84 16 30 H 0.07 0.85 8.13 -51.93 -0.42 0.43 16 31 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 32 H 0.09 1.15 6.40 -51.93 -0.33 0.82 16 33 H 0.09 1.23 4.81 -51.93 -0.25 0.98 16 34 H 0.09 1.16 2.67 -51.93 -0.14 1.02 16 35 H 0.07 0.92 8.11 -51.93 -0.42 0.50 16 36 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.06 1.07 7.87 -51.93 -0.41 0.66 16 38 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.10 2.41 6.04 -51.93 -0.31 2.10 16 40 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 41 H 0.08 1.86 7.00 -51.93 -0.36 1.50 16 42 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 LS Contribution 323.15 15.07 4.87 4.87 Total: -1.00 -31.48 323.15 -6.90 -38.38 By element: Atomic # 1 Polarization: 8.23 SS G_CDS: -6.11 Total: 2.12 kcal Atomic # 6 Polarization: -1.10 SS G_CDS: 0.15 Total: -0.95 kcal Atomic # 7 Polarization: -35.62 SS G_CDS: 0.12 Total: -35.50 kcal Atomic # 8 Polarization: -23.93 SS G_CDS: -0.90 Total: -24.83 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -31.48 -6.90 -38.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855255945.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.306 kcal (2) G-P(sol) polarization free energy of solvation -31.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds