Wall clock time and date at job start Tue Mar 31 2020 05:57:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86793 * 119.99656 * 2 1 4 4 H 1.48500 * 109.47271 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47543 * 300.00237 * 3 2 1 6 6 H 1.48504 * 109.47376 * 60.00405 * 3 2 1 7 7 C 1.37872 * 119.99850 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99712 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00355 * 0.02562 * 7 2 1 10 10 H 1.09000 * 109.52680 * 59.91863 * 9 7 2 11 11 C 1.53043 * 109.49722 * 299.83451 * 9 7 2 12 12 C 1.53037 * 109.53919 * 178.68474 * 11 9 7 13 13 C 1.53191 * 109.31499 * 61.36673 * 12 11 9 14 14 N 1.46925 * 108.77423 * 305.36620 * 13 12 11 15 15 C 1.34779 * 120.63041 * 233.62788 * 14 13 12 16 16 O 1.21283 * 119.99742 * 179.97438 * 15 14 13 17 17 C 1.50696 * 120.00186 * 359.97438 * 15 14 13 18 18 F 1.39908 * 109.46920 * 54.99955 * 17 15 14 19 19 C 1.52995 * 109.46968 * 295.00369 * 17 15 14 20 20 C 1.53007 * 109.47118 * 179.97438 * 19 17 15 21 21 C 1.53004 * 109.46993 * 59.99683 * 20 19 17 22 22 C 1.53003 * 109.47013 * 300.00199 * 21 20 19 23 23 C 1.52991 * 109.47466 * 174.99829 * 17 15 14 24 24 C 1.46926 * 118.73914 * 53.60547 * 14 13 12 25 25 H 0.96992 * 120.00501 * 359.97438 * 1 2 3 26 26 H 1.08997 * 109.45405 * 58.66267 * 11 9 7 27 27 H 1.09002 * 109.44862 * 298.69889 * 11 9 7 28 28 H 1.08997 * 109.49928 * 301.41588 * 12 11 9 29 29 H 1.08998 * 109.49765 * 181.31916 * 12 11 9 30 30 H 1.08998 * 109.59071 * 185.58119 * 13 12 11 31 31 H 1.09003 * 109.70105 * 65.21889 * 13 12 11 32 32 H 1.09005 * 109.47383 * 299.99201 * 19 17 15 33 33 H 1.08994 * 109.47805 * 59.99863 * 19 17 15 34 34 H 1.08999 * 109.47220 * 299.99986 * 20 19 17 35 35 H 1.09003 * 109.47165 * 179.97438 * 20 19 17 36 36 H 1.08993 * 109.47180 * 180.02562 * 21 20 19 37 37 H 1.08999 * 109.46890 * 60.00101 * 21 20 19 38 38 H 1.08999 * 109.46752 * 299.99974 * 22 21 20 39 39 H 1.09002 * 109.46780 * 179.97438 * 22 21 20 40 40 H 1.08998 * 109.47435 * 300.00389 * 23 17 15 41 41 H 1.09008 * 109.47225 * 59.99968 * 23 17 15 42 42 H 1.09006 * 109.58406 * 66.18027 * 24 14 13 43 43 H 1.09002 * 109.59019 * 186.60016 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0017 10 1 0.6233 -2.5566 -0.8909 11 6 0.3736 -2.5835 1.2494 12 6 -0.4167 -3.8939 1.2328 13 6 0.5593 -5.0745 1.2464 14 7 1.5002 -4.9231 0.1281 15 6 1.6754 -5.9202 -0.7617 16 8 2.4547 -5.7827 -1.6808 17 6 0.9030 -7.2057 -0.6146 18 9 -0.4663 -6.9236 -0.5611 19 6 1.3288 -7.9119 0.6741 20 6 0.5442 -9.2169 0.8238 21 6 0.8309 -10.1247 -0.3740 22 6 0.4051 -9.4184 -1.6627 23 6 1.1902 -8.1132 -1.8124 24 6 2.2460 -3.6640 -0.0021 25 1 -0.4850 0.8399 0.0004 26 1 -0.3188 -1.7419 1.2646 27 1 1.0043 -2.5510 2.1378 28 1 -1.0288 -3.9382 0.3320 29 1 -1.0588 -3.9426 2.1122 30 1 0.0063 -6.0072 1.1349 31 1 1.1092 -5.0859 2.1875 32 1 2.3957 -8.1319 0.6324 33 1 1.1242 -7.2655 1.5274 34 1 -0.5225 -8.9967 0.8656 35 1 0.8479 -9.7202 1.7417 36 1 0.2717 -11.0541 -0.2677 37 1 1.8976 -10.3448 -0.4158 38 1 -0.6616 -9.1982 -1.6208 39 1 0.6098 -10.0649 -2.5161 40 1 0.8868 -7.6101 -2.7305 41 1 2.2571 -8.3331 -1.8541 42 1 2.9332 -3.5579 0.8374 43 1 2.8060 -3.6659 -0.9373 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000855256127.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:27 Heat of formation + Delta-G solvation = -105.984999 kcal Electronic energy + Delta-G solvation = -24012.053224 eV Core-core repulsion = 20584.444287 eV Total energy + Delta-G solvation = -3427.608937 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.169 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -47.94373 -39.73813 -37.65282 -36.69013 -33.58787 -31.55944 -31.04345 -30.85813 -29.83160 -25.31362 -25.09912 -23.00869 -22.89145 -21.67745 -20.31921 -19.60295 -18.57045 -17.12315 -16.45591 -16.26403 -15.88500 -14.97780 -14.93998 -14.65539 -14.29337 -13.82027 -13.63135 -13.59689 -13.33418 -12.93538 -12.78242 -12.54139 -12.40938 -12.12221 -12.07700 -11.94072 -11.79169 -11.24132 -11.00338 -10.92573 -10.79476 -10.70578 -10.67976 -10.32537 -10.15504 -9.93043 -9.80018 -9.48604 -9.20859 -8.80984 -8.40011 -7.96373 -6.02456 -4.09927 2.77661 3.28352 3.31659 3.37043 3.41766 4.25496 4.32656 4.41750 4.50619 4.58105 4.91534 4.93793 5.06895 5.16471 5.26821 5.28705 5.38252 5.43050 5.57193 5.63370 5.73840 5.85096 5.86449 5.87637 5.94395 5.98885 6.10844 6.12114 6.25954 6.32936 6.38242 6.48520 6.63249 6.79257 6.90736 7.16198 7.31868 7.68475 7.85300 7.94812 8.06681 8.33387 8.46448 8.93770 9.55103 11.03130 Molecular weight = 283.17amu Principal moments of inertia in cm(-1) A = 0.036762 B = 0.004316 C = 0.004134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.466825 B = 6485.737729 C = 6771.070754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.063 3.937 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.514 4.514 8 H 0.058 0.942 9 C 0.040 3.960 10 H 0.030 0.970 11 C -0.112 4.112 12 C -0.133 4.133 13 C 0.094 3.906 14 N -0.589 5.589 15 C 0.493 3.507 16 O -0.537 6.537 17 C 0.112 3.888 18 F -0.190 7.190 19 C -0.146 4.146 20 C -0.118 4.118 21 C -0.122 4.122 22 C -0.121 4.121 23 C -0.122 4.122 24 C 0.115 3.885 25 H 0.260 0.740 26 H 0.096 0.904 27 H 0.035 0.965 28 H 0.059 0.941 29 H 0.057 0.943 30 H 0.086 0.914 31 H 0.062 0.938 32 H 0.084 0.916 33 H 0.087 0.913 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.065 0.935 37 H 0.063 0.937 38 H 0.069 0.931 39 H 0.069 0.931 40 H 0.080 0.920 41 H 0.087 0.913 42 H 0.058 0.942 43 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.766 -18.402 3.073 18.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.138 4.138 3 Si 0.721 3.279 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.553 4.553 8 H 0.076 0.924 9 C 0.021 3.979 10 H 0.048 0.952 11 C -0.151 4.151 12 C -0.171 4.171 13 C -0.029 4.029 14 N -0.320 5.320 15 C 0.278 3.722 16 O -0.415 6.415 17 C 0.090 3.910 18 F -0.170 7.170 19 C -0.184 4.184 20 C -0.156 4.156 21 C -0.159 4.159 22 C -0.159 4.159 23 C -0.160 4.160 24 C -0.006 4.006 25 H 0.070 0.930 26 H 0.114 0.886 27 H 0.054 0.946 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.104 0.896 31 H 0.080 0.920 32 H 0.103 0.897 33 H 0.105 0.895 34 H 0.089 0.911 35 H 0.088 0.912 36 H 0.083 0.917 37 H 0.082 0.918 38 H 0.087 0.913 39 H 0.088 0.912 40 H 0.099 0.901 41 H 0.105 0.895 42 H 0.076 0.924 43 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -0.528 -18.171 2.599 18.363 hybrid contribution 0.250 1.097 0.107 1.130 sum -0.278 -17.074 2.706 17.289 Atomic orbital electron populations 1.69887 1.05901 1.26395 1.50490 1.24939 0.94855 0.99101 0.94915 0.86518 0.80166 0.83653 0.77562 1.19730 1.21013 1.21027 1.21102 0.93011 0.90234 1.50942 0.92411 1.18980 0.92929 0.91075 0.94942 0.95219 1.21638 0.99452 0.95496 0.98465 1.21969 0.97612 0.96327 1.01177 1.22135 0.91533 1.00465 0.88718 1.48312 1.41406 1.15731 1.26518 1.20693 0.83794 0.85094 0.82607 1.90678 1.37891 1.80824 1.32129 1.21129 0.76838 0.93990 0.99019 1.92840 1.32197 1.94692 1.97298 1.22336 1.01982 0.97921 0.96160 1.21513 1.00870 0.94688 0.98508 1.21585 1.01537 0.98250 0.94553 1.21567 1.00611 0.95787 0.97905 1.21878 1.02370 0.95045 0.96711 1.22083 0.95170 0.81754 1.01592 0.93005 0.88597 0.94595 0.92178 0.92413 0.89593 0.91965 0.89721 0.89479 0.91066 0.91166 0.91667 0.91777 0.91252 0.91229 0.90142 0.89465 0.92415 0.90232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.09 11.32 55.43 0.63 -24.47 16 2 C 0.06 1.74 5.30 -17.82 -0.09 1.64 16 3 Si 0.89 21.15 29.54 -169.99 -5.02 16.13 16 4 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 5 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.51 -14.00 8.56 -34.44 -0.29 -14.29 16 8 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 9 C 0.04 0.99 2.25 -91.65 -0.21 0.79 16 10 H 0.03 0.84 8.14 -51.93 -0.42 0.41 16 11 C -0.11 -2.56 4.96 -26.69 -0.13 -2.69 16 12 C -0.13 -2.47 6.08 -26.61 -0.16 -2.63 16 13 C 0.09 1.53 4.75 -3.71 -0.02 1.52 16 14 N -0.59 -11.20 2.97 -172.77 -0.51 -11.71 16 15 C 0.49 9.15 6.80 -10.99 -0.07 9.07 16 16 O -0.54 -11.54 15.40 5.56 0.09 -11.45 16 17 C 0.11 1.60 0.72 -91.78 -0.07 1.53 16 18 F -0.19 -2.90 13.72 2.25 0.03 -2.87 16 19 C -0.15 -1.64 4.61 -26.73 -0.12 -1.76 16 20 C -0.12 -1.06 5.80 -26.73 -0.16 -1.22 16 21 C -0.12 -1.02 5.92 -26.73 -0.16 -1.18 16 22 C -0.12 -1.18 5.80 -26.71 -0.15 -1.34 16 23 C -0.12 -1.55 4.30 -26.71 -0.11 -1.67 16 24 C 0.11 2.51 5.66 -3.71 -0.02 2.49 16 25 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 26 H 0.10 2.47 6.05 -51.93 -0.31 2.15 16 27 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 29 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.09 1.23 3.81 -51.93 -0.20 1.04 16 31 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 32 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 33 H 0.09 0.97 5.41 -51.93 -0.28 0.68 16 34 H 0.07 0.67 7.80 -51.93 -0.41 0.27 16 35 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.07 0.71 7.80 -51.93 -0.41 0.31 16 39 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 41 H 0.09 1.09 8.05 -51.92 -0.42 0.67 16 42 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 43 H 0.08 1.86 7.01 -51.93 -0.36 1.50 16 LS Contribution 325.48 15.07 4.90 4.90 Total: -1.00 -29.77 325.48 -8.66 -38.43 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: -7.00 Total: 0.78 kcal Atomic # 6 Polarization: -7.97 SS G_CDS: -1.78 Total: -9.74 kcal Atomic # 7 Polarization: -36.29 SS G_CDS: 0.11 Total: -36.18 kcal Atomic # 8 Polarization: -11.54 SS G_CDS: 0.09 Total: -11.45 kcal Atomic # 9 Polarization: -2.90 SS G_CDS: 0.03 Total: -2.87 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -29.77 -8.66 -38.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855256127.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.558 kcal (2) G-P(sol) polarization free energy of solvation -29.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds