Wall clock time and date at job start Tue Mar 31 2020 05:19:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21283 * 120.00038 * 2 1 4 4 N 1.34778 * 120.00167 * 180.02562 * 2 1 3 5 5 C 1.47486 * 125.59413 * 0.02562 * 4 2 1 6 6 C 1.54323 * 107.03754 * 181.00840 * 5 4 2 7 7 C 1.55153 * 103.10236 * 22.24109 * 6 5 4 8 8 H 1.09002 * 111.00696 * 82.51784 * 7 6 5 9 9 O 1.45202 * 111.00622 * 206.33642 * 7 6 5 10 10 C 1.34232 * 116.99968 * 209.99809 * 9 7 6 11 11 O 1.20824 * 119.99753 * 0.02562 * 10 9 7 12 12 C 1.50699 * 119.99677 * 179.97438 * 10 9 7 13 13 C 1.53000 * 109.46820 * 180.02562 * 12 10 9 14 14 C 1.53007 * 109.46996 * 180.02562 * 13 12 10 15 15 C 1.53000 * 109.46996 * 179.97438 * 14 13 12 16 16 C 1.50698 * 109.46873 * 179.97438 * 15 14 13 17 17 H 1.08002 * 120.00090 * 359.97438 * 16 15 14 18 18 C 1.37880 * 119.99783 * 179.97438 * 16 15 14 19 19 N 1.31511 * 119.99980 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 119.99750 * 179.97438 * 18 16 15 21 21 H 1.48494 * 109.46994 * 60.00367 * 20 18 16 22 22 H 1.48502 * 109.47021 * 180.02562 * 20 18 16 23 23 H 1.48493 * 109.47311 * 299.99936 * 20 18 16 24 24 C 1.47428 * 125.64860 * 180.02562 * 4 2 1 25 25 H 1.08995 * 109.46875 * 269.99777 * 1 2 3 26 26 H 1.09000 * 109.47268 * 30.00086 * 1 2 3 27 27 H 1.09003 * 109.46808 * 150.00172 * 1 2 3 28 28 H 1.09000 * 110.02886 * 61.64190 * 5 4 2 29 29 H 1.09005 * 109.96368 * 300.33047 * 5 4 2 30 30 H 1.09002 * 110.72057 * 263.78860 * 6 5 4 31 31 H 1.09003 * 110.71837 * 140.69433 * 6 5 4 32 32 H 1.08993 * 109.47608 * 300.00478 * 12 10 9 33 33 H 1.08999 * 109.47041 * 60.00751 * 12 10 9 34 34 H 1.09002 * 109.47094 * 300.00265 * 13 12 10 35 35 H 1.08998 * 109.47360 * 60.00701 * 13 12 10 36 36 H 1.09002 * 109.46606 * 300.00118 * 14 13 12 37 37 H 1.08998 * 109.46837 * 59.99960 * 14 13 12 38 38 H 1.09002 * 109.47094 * 299.99844 * 15 14 13 39 39 H 1.09006 * 109.47110 * 59.99666 * 15 14 13 40 40 H 0.97002 * 120.00111 * 179.97438 * 19 18 16 41 41 H 1.09000 * 110.36462 * 37.07589 * 24 4 2 42 42 H 1.08998 * 110.36847 * 274.74797 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 1.5715 -2.5103 -0.0017 6 6 2.7282 -3.5316 0.0241 7 6 3.9081 -2.7121 0.6101 8 1 3.8587 -2.6794 1.6985 9 8 5.1835 -3.2450 0.1655 10 6 6.2280 -3.0983 0.9958 11 8 6.0812 -2.5433 2.0589 12 6 7.5833 -3.6267 0.6022 13 6 8.5889 -3.3320 1.7170 14 6 9.9651 -3.8680 1.3172 15 6 10.9709 -3.5727 2.4317 16 6 12.3262 -4.1012 2.0382 17 1 12.4570 -4.5983 1.0883 18 6 13.3992 -3.9500 2.8908 19 7 13.2398 -3.3451 4.0476 20 14 15.0790 -4.6057 2.4032 21 1 15.5224 -3.9470 1.1484 22 1 16.0553 -4.3190 3.4849 23 1 14.9948 -6.0727 2.1893 24 6 3.6480 -1.3123 -0.0001 25 1 -0.3633 0.0000 1.0276 26 1 -0.3634 0.8900 -0.5138 27 1 -0.3633 -0.8900 -0.5138 28 1 0.9747 -2.6487 -0.9032 29 1 0.9463 -2.6360 0.8823 30 1 2.9608 -3.8762 -0.9835 31 1 2.4845 -4.3739 0.6716 32 1 7.5217 -4.7034 0.4442 33 1 7.9088 -3.1424 -0.3185 34 1 8.6506 -2.2553 1.8754 35 1 8.2634 -3.8166 2.6375 36 1 9.9036 -4.9446 1.1586 37 1 10.2905 -3.3831 0.3968 38 1 11.0322 -2.4960 2.5899 39 1 10.6456 -4.0572 3.3524 40 1 13.9946 -3.2390 4.6475 41 1 4.1055 -0.5387 0.6167 42 1 4.0343 -1.2647 -1.0182 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000860941111.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:34 Heat of formation + Delta-G solvation = -143.152427 kcal Electronic energy + Delta-G solvation = -21461.148510 eV Core-core repulsion = 18019.555083 eV Total energy + Delta-G solvation = -3441.593427 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.93097 -40.01479 -37.87574 -36.28002 -35.00660 -32.72055 -32.08679 -30.36105 -30.00646 -28.60580 -25.96616 -24.13200 -22.94933 -21.57022 -20.62118 -20.05281 -19.84107 -17.94376 -17.54961 -16.57893 -16.48563 -16.19777 -15.98642 -15.58812 -14.88307 -14.53475 -14.44533 -14.00461 -13.67706 -13.38561 -13.06312 -12.94827 -12.77002 -12.60610 -12.47365 -12.35434 -12.14253 -11.77147 -11.67762 -11.26231 -11.00705 -10.85542 -10.61051 -10.59253 -10.47733 -10.41874 -10.29615 -9.66167 -9.29810 -9.16280 -9.03930 -8.31775 -5.96583 -3.99345 2.13740 2.20028 2.23413 2.77715 3.34948 3.39403 3.41575 3.83211 3.96887 4.34846 4.39309 4.47424 4.49220 4.70064 4.75813 4.91527 4.93229 4.96406 5.19170 5.22316 5.23767 5.31951 5.35193 5.38771 5.42963 5.48436 5.67208 5.76308 6.03131 6.16754 6.32180 6.44986 6.74728 6.92805 7.00332 7.14871 7.70676 7.71606 7.72900 7.86177 8.03900 8.45476 9.07959 9.64394 11.14669 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.044054 B = 0.002213 C = 0.002159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 635.435325 B =12650.754869 C =12968.691086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.526 3.474 3 O -0.541 6.541 4 N -0.621 5.621 5 C 0.103 3.897 6 C -0.129 4.129 7 C 0.072 3.928 8 H 0.104 0.896 9 O -0.347 6.347 10 C 0.459 3.541 11 O -0.500 6.500 12 C -0.111 4.111 13 C -0.109 4.109 14 C -0.110 4.110 15 C 0.020 3.980 16 C -0.522 4.522 17 H 0.054 0.946 18 C 0.055 3.945 19 N -0.895 5.895 20 Si 0.893 3.107 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.277 1.277 24 C 0.092 3.908 25 H 0.095 0.905 26 H 0.095 0.905 27 H 0.080 0.920 28 H 0.079 0.921 29 H 0.077 0.923 30 H 0.094 0.906 31 H 0.094 0.906 32 H 0.104 0.896 33 H 0.105 0.895 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.049 0.951 37 H 0.050 0.950 38 H 0.016 0.984 39 H 0.016 0.984 40 H 0.261 0.739 41 H 0.087 0.913 42 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.427 -0.874 -10.469 30.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.316 3.684 3 O -0.418 6.418 4 N -0.358 5.358 5 C -0.020 4.020 6 C -0.167 4.167 7 C 0.015 3.985 8 H 0.122 0.878 9 O -0.263 6.263 10 C 0.302 3.698 11 O -0.386 6.386 12 C -0.148 4.148 13 C -0.147 4.147 14 C -0.147 4.147 15 C -0.017 4.017 16 C -0.560 4.560 17 H 0.073 0.927 18 C -0.146 4.146 19 N -0.534 5.534 20 Si 0.720 3.280 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.203 1.203 24 C -0.031 4.031 25 H 0.114 0.886 26 H 0.113 0.887 27 H 0.099 0.901 28 H 0.098 0.902 29 H 0.095 0.905 30 H 0.112 0.888 31 H 0.112 0.888 32 H 0.123 0.877 33 H 0.123 0.877 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.035 0.965 39 H 0.034 0.966 40 H 0.070 0.930 41 H 0.106 0.894 42 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -28.131 0.007 -9.978 29.849 hybrid contribution 0.879 -0.367 -0.085 0.957 sum -27.252 -0.360 -10.064 29.053 Atomic orbital electron populations 1.21883 0.90926 1.04984 1.04950 1.20580 0.90472 0.81819 0.75526 1.90766 1.70738 1.30558 1.49694 1.48523 1.06923 1.06102 1.74228 1.22171 0.96118 0.81027 1.02643 1.22772 0.92307 0.97748 1.03831 1.23748 0.81350 0.92686 1.00690 0.87781 1.86604 1.17926 1.73279 1.48524 1.24353 0.86953 0.76272 0.82184 1.90684 1.84539 1.39591 1.23813 1.21629 0.87159 1.03236 1.02792 1.21593 0.94383 1.02422 0.96278 1.21652 0.92908 0.99448 1.00741 1.19095 0.92522 0.97082 0.93012 1.21231 0.94065 1.37325 1.03378 0.92736 1.25046 0.99090 0.95407 0.95050 1.69961 1.31293 1.42894 1.09292 0.86653 0.83874 0.79377 0.78048 1.20262 1.21326 1.20281 1.22479 0.81166 0.97082 1.02377 0.88629 0.88669 0.90088 0.90242 0.90497 0.88776 0.88770 0.87743 0.87727 0.91490 0.91514 0.93183 0.93170 0.96534 0.96558 0.92959 0.89430 0.90111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.84 9.90 36.00 0.36 -0.48 16 2 C 0.53 5.23 7.96 -10.99 -0.09 5.15 16 3 O -0.54 -8.07 17.36 5.55 0.10 -7.97 16 4 N -0.62 -5.35 3.34 -170.15 -0.57 -5.92 16 5 C 0.10 0.48 6.14 -2.81 -0.02 0.47 16 6 C -0.13 -0.71 6.68 -24.90 -0.17 -0.88 16 7 C 0.07 0.68 3.43 -24.59 -0.08 0.59 16 8 H 0.10 1.11 7.13 -51.93 -0.37 0.74 16 9 O -0.35 -3.88 10.05 -39.26 -0.39 -4.28 16 10 C 0.46 6.22 7.96 36.01 0.29 6.51 16 11 O -0.50 -8.38 15.18 -18.75 -0.28 -8.67 16 12 C -0.11 -1.41 5.81 -27.88 -0.16 -1.57 16 13 C -0.11 -1.85 4.50 -26.73 -0.12 -1.97 16 14 C -0.11 -2.19 5.15 -26.73 -0.14 -2.33 16 15 C 0.02 0.52 4.97 -27.88 -0.14 0.38 16 16 C -0.52 -14.89 9.11 -34.44 -0.31 -15.21 16 17 H 0.05 1.49 7.74 -52.49 -0.41 1.09 16 18 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 19 N -0.90 -27.38 13.29 55.43 0.74 -26.64 16 20 Si 0.89 21.82 29.54 -169.99 -5.02 16.80 16 21 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 22 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 23 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 24 C 0.09 0.95 6.65 -2.53 -0.02 0.93 16 25 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.08 0.21 7.12 -51.93 -0.37 -0.16 16 28 H 0.08 0.22 7.87 -51.93 -0.41 -0.19 16 29 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.09 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.07 1.21 8.10 -51.93 -0.42 0.79 16 35 H 0.07 1.19 8.10 -51.93 -0.42 0.77 16 36 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 39 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 40 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 41 H 0.09 1.11 8.04 -51.93 -0.42 0.69 16 42 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 LS Contribution 353.91 15.07 5.33 5.33 Total: -1.00 -35.75 353.91 -7.82 -43.57 By element: Atomic # 1 Polarization: 1.70 SS G_CDS: -7.02 Total: -5.33 kcal Atomic # 6 Polarization: -6.20 SS G_CDS: -0.70 Total: -6.90 kcal Atomic # 7 Polarization: -32.73 SS G_CDS: 0.17 Total: -32.56 kcal Atomic # 8 Polarization: -20.33 SS G_CDS: -0.58 Total: -20.91 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -35.75 -7.82 -43.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000860941111.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.584 kcal (2) G-P(sol) polarization free energy of solvation -35.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds