Wall clock time and date at job start Tue Mar 31 2020 06:34:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.47442 * 2 1 4 4 C 1.53001 * 109.46995 * 120.00096 * 2 1 3 5 5 C 1.50706 * 109.47108 * 294.99810 * 4 2 1 6 6 H 1.07999 * 119.99938 * 0.02562 * 5 4 2 7 7 C 1.37872 * 120.00159 * 180.02562 * 5 4 2 8 8 N 1.31516 * 120.00181 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00031 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47470 * 59.99876 * 9 7 5 11 11 H 1.48501 * 109.47298 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.47049 * 299.99548 * 9 7 5 13 13 C 1.52996 * 109.47091 * 239.99946 * 2 1 3 14 14 N 1.46893 * 109.47408 * 65.00208 * 13 2 1 15 15 C 1.46896 * 111.00381 * 180.02562 * 14 13 2 16 16 C 1.50700 * 109.47453 * 179.97438 * 15 14 13 17 17 C 1.39374 * 119.50598 * 269.97867 * 16 15 14 18 18 C 1.36087 * 120.98902 * 179.97438 * 17 16 15 19 19 C 1.40545 * 119.65544 * 0.03915 * 18 17 16 20 20 C 1.40533 * 121.28541 * 179.97438 * 19 18 17 21 21 C 1.36093 * 119.65526 * 179.97438 * 20 19 18 22 22 C 1.39378 * 120.98927 * 359.94849 * 21 20 19 23 23 C 1.36095 * 120.98758 * 0.06983 * 22 21 20 24 24 C 1.40545 * 119.65358 * 359.95511 * 23 22 21 25 25 C 1.36093 * 119.50416 * 89.99771 * 16 15 14 26 26 H 1.09003 * 109.46734 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47207 * 300.00144 * 1 2 3 28 28 H 1.09001 * 109.46685 * 60.00210 * 1 2 3 29 29 H 1.08992 * 109.47441 * 54.99771 * 4 2 1 30 30 H 1.09002 * 109.47351 * 175.00141 * 4 2 1 31 31 H 0.96998 * 120.00496 * 179.97438 * 8 7 5 32 32 H 1.08998 * 109.47137 * 304.99726 * 13 2 1 33 33 H 1.09006 * 109.47027 * 185.00016 * 13 2 1 34 34 H 1.00905 * 111.00298 * 56.04427 * 14 13 2 35 35 H 1.09001 * 109.47119 * 59.99907 * 15 14 13 36 36 H 1.08999 * 109.47176 * 299.99748 * 15 14 13 37 37 H 1.07996 * 119.50518 * 0.02562 * 17 16 15 38 38 H 1.08001 * 120.17917 * 179.97438 * 18 17 16 39 39 H 1.07996 * 120.17302 * 359.95478 * 20 19 18 40 40 H 1.08000 * 119.50630 * 179.97438 * 21 20 19 41 41 H 1.07996 * 119.50867 * 180.02562 * 22 21 20 42 42 H 1.07998 * 120.16921 * 180.22554 * 23 22 21 43 43 H 1.08005 * 120.17341 * 359.96274 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6413 0.0571 2.4766 6 1 1.0800 0.9742 2.3758 7 6 1.9932 -0.4017 3.7283 8 7 2.6772 -1.5182 3.8512 9 14 1.4984 0.5627 5.2496 10 1 0.0184 0.6683 5.3093 11 1 1.9935 -0.1372 6.4622 12 1 2.0897 1.9236 5.1870 13 6 2.0400 -0.7212 -1.2492 14 7 1.6515 0.0374 -2.4456 15 6 2.1248 -0.6272 -3.6671 16 6 1.7078 0.1779 -4.8709 17 6 0.4816 -0.0828 -5.4799 18 6 0.0749 0.6261 -6.5680 19 6 0.9017 1.6365 -7.0884 20 6 0.5159 2.3892 -8.2108 21 6 1.3422 3.3601 -8.6868 22 6 2.5679 3.6218 -8.0770 23 6 2.9746 2.9130 -6.9887 24 6 2.1483 1.9020 -6.4689 25 6 2.5345 1.1485 -5.3472 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.6054 -1.7197 1.2952 30 1 3.1264 -0.7995 1.2057 31 1 2.9251 -1.8408 4.7317 32 1 1.6054 -1.7198 -1.2951 33 1 3.1264 -0.7995 -1.2055 34 1 1.9883 0.9873 -2.3967 35 1 1.6904 -1.6249 -3.7296 36 1 3.2117 -0.7051 -3.6405 37 1 -0.1557 -0.8585 -5.0818 38 1 -0.8778 0.4129 -7.0299 39 1 -0.4312 2.1978 -8.6932 40 1 1.0435 3.9368 -9.5497 41 1 3.2048 4.3982 -8.4745 42 1 3.9254 3.1293 -6.5244 43 1 3.4817 1.3396 -4.8648 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000876984996.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:19 Heat of formation + Delta-G solvation = 18.861997 kcal Electronic energy + Delta-G solvation = -20587.138055 eV Core-core repulsion = 17595.712115 eV Total energy + Delta-G solvation = -2991.425940 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 283.163 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.52816 -37.60256 -36.27475 -34.00554 -32.84128 -32.00364 -30.41087 -29.43866 -26.94802 -26.08568 -24.33472 -23.40559 -22.30654 -22.11483 -21.62481 -19.12600 -17.48378 -17.11151 -16.35316 -16.10654 -15.30581 -14.90463 -14.74014 -14.40358 -14.21795 -13.89930 -13.70089 -13.58906 -13.44326 -12.93493 -12.50408 -12.26969 -12.00201 -11.85763 -11.50275 -11.39080 -11.27396 -11.00940 -10.97933 -10.82985 -10.73936 -10.27771 -10.23084 -10.12517 -9.68455 -9.15236 -8.96391 -8.66798 -8.31320 -8.18130 -7.98455 -5.96237 -3.97352 0.38309 0.85791 1.90746 2.82373 3.35496 3.39702 3.42400 3.94277 4.39025 4.47327 4.56073 4.65559 4.73102 4.79873 4.90328 5.03807 5.11841 5.22450 5.31012 5.39437 5.47429 5.57094 5.64739 5.75155 5.80880 5.89938 5.91945 6.08278 6.10331 6.17038 6.27789 6.42098 6.42672 6.53252 6.56180 6.67441 6.70637 6.86147 7.02280 7.19866 7.21044 7.35076 7.63157 7.70989 7.86775 8.03952 8.48026 9.08799 9.65891 11.15273 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.032468 B = 0.002512 C = 0.002469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.189882 B =11144.524602 C =11337.787254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.082 4.082 3 H 0.053 0.947 4 C 0.027 3.973 5 C -0.513 4.513 6 H 0.056 0.944 7 C 0.055 3.945 8 N -0.898 5.898 9 Si 0.890 3.110 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.278 1.278 13 C 0.063 3.937 14 N -0.682 5.682 15 C 0.093 3.907 16 C -0.067 4.067 17 C -0.090 4.090 18 C -0.113 4.113 19 C -0.053 4.053 20 C -0.106 4.106 21 C -0.122 4.122 22 C -0.122 4.122 23 C -0.105 4.105 24 C -0.050 4.050 25 C -0.105 4.105 26 H 0.039 0.961 27 H 0.053 0.947 28 H 0.042 0.958 29 H 0.016 0.984 30 H 0.012 0.988 31 H 0.260 0.740 32 H 0.067 0.933 33 H 0.025 0.975 34 H 0.338 0.662 35 H 0.079 0.921 36 H 0.036 0.964 37 H 0.126 0.874 38 H 0.126 0.874 39 H 0.125 0.875 40 H 0.120 0.880 41 H 0.120 0.880 42 H 0.125 0.875 43 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.660 6.197 -25.574 26.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.101 4.101 3 H 0.071 0.929 4 C -0.010 4.010 5 C -0.551 4.551 6 H 0.074 0.926 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.718 3.282 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C -0.065 4.065 14 N -0.313 5.313 15 C -0.036 4.036 16 C -0.068 4.068 17 C -0.108 4.108 18 C -0.131 4.131 19 C -0.053 4.053 20 C -0.124 4.124 21 C -0.140 4.140 22 C -0.140 4.140 23 C -0.123 4.123 24 C -0.050 4.050 25 C -0.123 4.123 26 H 0.058 0.942 27 H 0.072 0.928 28 H 0.061 0.939 29 H 0.035 0.965 30 H 0.031 0.969 31 H 0.069 0.931 32 H 0.086 0.914 33 H 0.043 0.957 34 H 0.156 0.844 35 H 0.098 0.902 36 H 0.054 0.946 37 H 0.144 0.856 38 H 0.144 0.856 39 H 0.143 0.857 40 H 0.138 0.862 41 H 0.138 0.862 42 H 0.143 0.857 43 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -2.206 5.774 -25.454 26.194 hybrid contribution 0.759 0.670 0.985 1.413 sum -1.447 6.444 -24.469 25.345 Atomic orbital electron populations 1.21588 0.95706 1.00552 1.00156 1.21198 0.96030 0.98905 0.93966 0.92857 1.19120 0.95895 0.95579 0.90422 1.21202 1.34606 1.08298 0.90999 0.92625 1.25021 0.95352 0.95108 0.99090 1.69954 1.39037 1.21262 1.23471 0.86687 0.78916 0.80089 0.82476 1.20263 1.21384 1.20323 1.22184 0.97229 0.97761 0.89335 1.60574 1.63993 1.05775 1.00922 1.20949 0.97496 0.97369 0.87787 1.19611 0.94403 0.96485 0.96270 1.20789 0.95542 0.99513 0.94940 1.21010 0.99274 0.95740 0.97031 1.18110 0.94277 0.96888 0.96046 1.21025 0.99694 0.95960 0.95763 1.20825 0.94673 0.98257 1.00203 1.20826 0.96698 0.99973 0.96488 1.21052 0.99292 0.95362 0.96553 1.18065 0.94233 0.96747 0.95972 1.20932 0.99946 0.95658 0.95809 0.94172 0.92800 0.93930 0.96546 0.96940 0.93054 0.91447 0.95696 0.84404 0.90211 0.94565 0.85641 0.85626 0.85744 0.86197 0.86158 0.85671 0.85756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.41 8.89 37.16 0.33 -2.08 16 2 C -0.08 -1.68 2.48 -90.62 -0.22 -1.91 16 3 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 4 C 0.03 0.70 4.45 -27.88 -0.12 0.58 16 5 C -0.51 -14.46 8.41 -34.44 -0.29 -14.75 16 6 H 0.06 1.53 7.06 -52.49 -0.37 1.16 16 7 C 0.05 1.58 5.46 -17.82 -0.10 1.49 16 8 N -0.90 -27.13 13.29 55.43 0.74 -26.39 16 9 Si 0.89 21.85 29.54 -169.99 -5.02 16.83 16 10 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 12 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 13 C 0.06 1.09 5.07 -3.83 -0.02 1.07 16 14 N -0.68 -9.91 5.94 -115.07 -0.68 -10.60 16 15 C 0.09 1.14 5.78 -4.98 -0.03 1.11 16 16 C -0.07 -0.79 5.36 -104.97 -0.56 -1.35 16 17 C -0.09 -0.99 9.58 -39.93 -0.38 -1.38 16 18 C -0.11 -1.16 9.77 -39.49 -0.39 -1.55 16 19 C -0.05 -0.58 5.74 -106.83 -0.61 -1.19 16 20 C -0.11 -0.97 9.77 -39.49 -0.39 -1.36 16 21 C -0.12 -1.01 9.95 -39.93 -0.40 -1.41 16 22 C -0.12 -1.04 9.95 -39.93 -0.40 -1.44 16 23 C -0.10 -1.01 9.77 -39.48 -0.39 -1.39 16 24 C -0.05 -0.57 5.74 -106.83 -0.61 -1.18 16 25 C -0.10 -1.18 9.37 -39.49 -0.37 -1.55 16 26 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.05 1.13 6.95 -51.93 -0.36 0.77 16 28 H 0.04 0.76 7.75 -51.93 -0.40 0.35 16 29 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.01 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 32 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 33 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.34 4.81 8.72 -39.29 -0.34 4.47 16 35 H 0.08 0.96 8.08 -51.93 -0.42 0.54 16 36 H 0.04 0.43 8.07 -51.93 -0.42 0.01 16 37 H 0.13 1.27 8.06 -52.49 -0.42 0.84 16 38 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 39 H 0.12 0.86 8.06 -52.49 -0.42 0.43 16 40 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 41 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 42 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 43 H 0.12 1.23 8.06 -52.48 -0.42 0.80 16 LS Contribution 355.82 15.07 5.36 5.36 Total: -1.00 -30.79 355.82 -11.50 -42.29 By element: Atomic # 1 Polarization: 7.73 SS G_CDS: -6.95 Total: 0.79 kcal Atomic # 6 Polarization: -23.33 SS G_CDS: -4.95 Total: -28.28 kcal Atomic # 7 Polarization: -37.04 SS G_CDS: 0.05 Total: -36.99 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -30.79 -11.50 -42.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000876984996.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.154 kcal (2) G-P(sol) polarization free energy of solvation -30.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.292 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds