Wall clock time and date at job start Tue Mar 31 2020 05:44:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34230 * 116.99977 * 2 1 4 4 O 1.20825 * 120.00397 * 0.02562 * 3 2 1 5 5 C 1.50702 * 119.99586 * 180.02562 * 3 2 1 6 6 H 1.09003 * 109.47108 * 334.84932 * 5 3 2 7 7 C 1.52992 * 109.47221 * 94.84967 * 5 3 2 8 8 N 1.46499 * 109.47179 * 294.99753 * 7 5 3 9 9 C 1.34785 * 119.99951 * 179.97438 * 8 7 5 10 10 O 1.21688 * 119.99959 * 359.97438 * 9 8 7 11 11 C 1.46369 * 120.00012 * 179.97438 * 9 8 7 12 12 H 1.08007 * 120.00086 * 0.02562 * 11 9 8 13 13 C 1.40048 * 120.00113 * 179.97438 * 11 9 8 14 14 N 1.30669 * 119.99908 * 0.02562 * 13 11 9 15 15 Si 1.86801 * 120.00077 * 180.02562 * 13 11 9 16 16 H 1.48503 * 109.47025 * 60.00236 * 15 13 11 17 17 H 1.48499 * 109.47121 * 180.02562 * 15 13 11 18 18 H 1.48494 * 109.47150 * 300.00272 * 15 13 11 19 19 C 1.53003 * 109.46886 * 214.85027 * 5 3 2 20 20 C 1.52998 * 109.47114 * 174.00330 * 19 5 3 21 21 C 1.54259 * 110.03741 * 292.03155 * 20 19 5 22 22 C 1.54893 * 104.19658 * 217.10687 * 21 20 19 23 23 C 1.54885 * 102.75114 * 37.93800 * 22 21 20 24 24 C 1.53875 * 110.03228 * 174.85744 * 20 19 5 25 25 H 1.08994 * 109.47545 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46721 * 299.99649 * 1 2 3 27 27 H 1.09007 * 109.47034 * 59.99215 * 1 2 3 28 28 H 1.08996 * 109.47337 * 55.00081 * 7 5 3 29 29 H 1.09004 * 109.47139 * 174.99532 * 7 5 3 30 30 H 0.97001 * 120.00164 * 0.02562 * 8 7 5 31 31 H 0.97002 * 120.00286 * 179.97438 * 14 13 11 32 32 H 1.08997 * 109.47405 * 294.00757 * 19 5 3 33 33 H 1.09007 * 109.47057 * 54.00848 * 19 5 3 34 34 H 1.09004 * 110.01436 * 53.47271 * 20 19 5 35 35 H 1.09000 * 110.48466 * 335.78046 * 21 20 19 36 36 H 1.08999 * 110.48965 * 98.42615 * 21 20 19 37 37 H 1.09005 * 110.75533 * 279.62194 * 22 21 20 38 38 H 1.08997 * 110.91775 * 156.32899 * 22 21 20 39 39 H 1.09000 * 110.48804 * 203.38269 * 23 22 21 40 40 H 1.08996 * 110.49076 * 80.73554 * 23 22 21 41 41 H 1.09003 * 110.03569 * 238.57227 * 24 20 19 42 42 H 1.09000 * 110.03652 * 359.95879 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2094 0.0005 5 6 3.5664 1.2748 -0.0006 6 1 3.9780 0.3647 0.4358 7 6 4.0687 1.4235 -1.4380 8 7 3.7437 0.2131 -2.1966 9 6 4.0919 0.1178 -3.4952 10 8 4.6757 1.0374 -4.0377 11 6 3.7677 -1.0918 -4.2530 12 1 3.2492 -1.9078 -3.7716 13 6 4.1289 -1.1906 -5.6025 14 7 4.7558 -0.2031 -6.1849 15 14 3.7146 -2.7340 -6.5697 16 1 2.2431 -2.9336 -6.5768 17 1 4.2016 -2.5893 -7.9651 18 1 4.3701 -3.9061 -5.9361 19 6 4.0141 2.4835 0.8238 20 6 5.5389 2.4792 0.9484 21 6 5.9948 1.2905 1.8195 22 6 7.1894 1.8503 2.6310 23 6 6.7401 3.2987 2.9458 24 6 6.0128 3.7561 1.6644 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5140 -0.8900 28 1 3.5883 2.2840 -1.9036 29 1 5.1489 1.5696 -1.4321 30 1 3.2774 -0.5196 -1.7645 31 1 5.0064 -0.2716 -7.1195 32 1 3.6924 3.3999 0.3292 33 1 3.5682 2.4310 1.8172 34 1 5.9939 2.4148 -0.0401 35 1 5.1927 0.9778 2.4880 36 1 6.3159 0.4589 1.1922 37 1 8.0988 1.8499 2.0299 38 1 7.3356 1.2829 3.5500 39 1 7.6051 3.9327 3.1404 40 1 6.0583 3.3104 3.7961 41 1 6.6984 4.3109 1.0238 42 1 5.1566 4.3792 1.9225 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000890957913.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:25 Heat of formation + Delta-G solvation = -157.033946 kcal Electronic energy + Delta-G solvation = -22910.350237 eV Core-core repulsion = 19468.154862 eV Total energy + Delta-G solvation = -3442.195375 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 3.21 seconds Orbital eigenvalues (eV) -40.52686 -38.64707 -37.26267 -36.37474 -34.65906 -32.57669 -31.78762 -29.12800 -28.65355 -27.52749 -26.44199 -24.39258 -23.22877 -20.87567 -20.14779 -19.74550 -19.29074 -17.60439 -17.20110 -16.49741 -16.10008 -15.78176 -15.25493 -15.04295 -14.75961 -14.03117 -13.89695 -13.55805 -13.38485 -13.17635 -12.92052 -12.48451 -12.37735 -12.11611 -11.86920 -11.53176 -11.24789 -11.17436 -11.12949 -11.03719 -10.90699 -10.77383 -10.67902 -10.65098 -10.56544 -10.42573 -10.33534 -10.22837 -10.01182 -8.83371 -7.62116 -7.53235 -6.17431 -4.62822 2.38212 2.85154 3.16813 3.21533 3.23496 4.10573 4.45138 4.56129 4.59601 4.63203 4.70643 4.97293 4.99574 5.17796 5.22678 5.27464 5.34435 5.40695 5.43446 5.52470 5.56492 5.60699 5.61687 5.70839 5.79328 5.81027 5.87195 5.99628 6.05276 6.10312 6.22956 6.27703 6.30292 6.44042 6.50978 6.55542 7.44675 7.90475 7.92730 8.06630 8.33010 9.03613 9.52496 10.60864 10.79091 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.015351 B = 0.004573 C = 0.003840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1823.534511 B = 6121.167367 C = 7290.629259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.355 6.355 3 C 0.472 3.528 4 O -0.511 6.511 5 C -0.091 4.091 6 H 0.106 0.894 7 C 0.143 3.857 8 N -0.771 5.771 9 C 0.555 3.445 10 O -0.580 6.580 11 C -0.545 4.545 12 H 0.067 0.933 13 C 0.088 3.912 14 N -0.768 5.768 15 Si 0.908 3.092 16 H -0.268 1.268 17 H -0.281 1.281 18 H -0.268 1.268 19 C -0.092 4.092 20 C -0.097 4.097 21 C -0.123 4.123 22 C -0.125 4.125 23 C -0.124 4.124 24 C -0.121 4.121 25 H 0.100 0.900 26 H 0.058 0.942 27 H 0.063 0.937 28 H 0.056 0.944 29 H 0.071 0.929 30 H 0.383 0.617 31 H 0.269 0.731 32 H 0.078 0.922 33 H 0.067 0.933 34 H 0.085 0.915 35 H 0.065 0.935 36 H 0.069 0.931 37 H 0.066 0.934 38 H 0.062 0.938 39 H 0.061 0.939 40 H 0.062 0.938 41 H 0.065 0.935 42 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.114 1.451 17.497 17.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.272 6.272 3 C 0.315 3.685 4 O -0.398 6.398 5 C -0.111 4.111 6 H 0.124 0.876 7 C 0.018 3.982 8 N -0.428 5.428 9 C 0.359 3.641 10 O -0.463 6.463 11 C -0.582 4.582 12 H 0.086 0.914 13 C -0.132 4.132 14 N -0.397 5.397 15 Si 0.732 3.268 16 H -0.193 1.193 17 H -0.206 1.206 18 H -0.193 1.193 19 C -0.130 4.130 20 C -0.115 4.115 21 C -0.161 4.161 22 C -0.163 4.163 23 C -0.162 4.162 24 C -0.158 4.158 25 H 0.118 0.882 26 H 0.077 0.923 27 H 0.082 0.918 28 H 0.074 0.926 29 H 0.089 0.911 30 H 0.216 0.784 31 H 0.079 0.921 32 H 0.097 0.903 33 H 0.086 0.914 34 H 0.103 0.897 35 H 0.084 0.916 36 H 0.088 0.912 37 H 0.085 0.915 38 H 0.081 0.919 39 H 0.080 0.920 40 H 0.081 0.919 41 H 0.083 0.917 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -0.827 2.524 16.910 17.117 hybrid contribution -0.769 -1.084 -0.294 1.361 sum -1.596 1.439 16.616 16.754 Atomic orbital electron populations 1.23230 0.76699 1.03572 1.02283 1.86530 1.23226 1.33562 1.83839 1.23782 0.91977 0.81285 0.71421 1.90626 1.67236 1.36435 1.45541 1.21439 0.87190 1.02424 1.00036 0.87636 1.20911 1.00157 0.90964 0.86191 1.46252 1.65898 1.17705 1.12933 1.18204 0.78732 0.88466 0.78662 1.90602 1.45481 1.41506 1.68740 1.20842 1.40372 1.01578 0.95370 0.91445 1.25700 0.93072 0.96688 0.97723 1.70010 1.28454 1.29883 1.11334 0.86437 0.79460 0.82259 0.78596 1.19322 1.20579 1.19255 1.21574 0.95408 0.96846 0.99208 1.21892 0.94477 0.94881 1.00255 1.22497 0.97711 0.97711 0.98139 1.22492 0.98333 0.95816 0.99660 1.22355 0.99634 0.96490 0.97714 1.22202 1.00008 0.97167 0.96433 0.88169 0.92326 0.91797 0.92611 0.91080 0.78440 0.92065 0.90293 0.91399 0.89719 0.91587 0.91210 0.91490 0.91894 0.92015 0.91919 0.91656 0.91675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.43 10.56 101.05 1.07 1.50 16 2 O -0.36 -5.33 10.10 -39.26 -0.40 -5.73 16 3 C 0.47 7.69 6.55 36.01 0.24 7.92 16 4 O -0.51 -9.37 16.14 -18.75 -0.30 -9.67 16 5 C -0.09 -1.34 2.25 -91.77 -0.21 -1.55 16 6 H 0.11 1.38 7.35 -51.93 -0.38 1.00 16 7 C 0.14 2.74 4.94 -4.05 -0.02 2.72 16 8 N -0.77 -17.39 5.35 -61.73 -0.33 -17.72 16 9 C 0.56 15.92 7.75 -12.99 -0.10 15.82 16 10 O -0.58 -18.91 15.02 5.20 0.08 -18.83 16 11 C -0.54 -15.48 9.54 -35.63 -0.34 -15.82 16 12 H 0.07 1.75 7.85 -52.48 -0.41 1.34 16 13 C 0.09 2.47 5.50 -17.37 -0.10 2.37 16 14 N -0.77 -23.16 11.83 55.55 0.66 -22.51 16 15 Si 0.91 20.20 29.56 -169.99 -5.02 15.17 16 16 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 17 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 18 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 19 C -0.09 -1.15 3.36 -26.73 -0.09 -1.24 16 20 C -0.10 -1.10 2.82 -89.51 -0.25 -1.35 16 21 C -0.12 -1.27 5.45 -25.07 -0.14 -1.41 16 22 C -0.13 -1.15 6.91 -24.74 -0.17 -1.33 16 23 C -0.12 -1.10 6.83 -25.07 -0.17 -1.27 16 24 C -0.12 -1.21 6.46 -25.61 -0.17 -1.38 16 25 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 26 H 0.06 0.63 8.13 -51.93 -0.42 0.21 16 27 H 0.06 0.82 8.13 -51.92 -0.42 0.40 16 28 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 29 H 0.07 1.37 6.28 -51.93 -0.33 1.04 16 30 H 0.38 7.80 7.79 -40.82 -0.32 7.48 16 31 H 0.27 7.36 8.29 -40.82 -0.34 7.02 16 32 H 0.08 1.07 8.04 -51.93 -0.42 0.65 16 33 H 0.07 0.78 8.00 -51.93 -0.42 0.36 16 34 H 0.08 1.10 6.28 -51.93 -0.33 0.77 16 35 H 0.07 0.64 7.76 -51.93 -0.40 0.24 16 36 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 38 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 39 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.06 0.63 7.67 -51.93 -0.40 0.23 16 LS Contribution 344.92 15.07 5.20 5.20 Total: -1.00 -35.21 344.92 -7.33 -42.54 By element: Atomic # 1 Polarization: 13.33 SS G_CDS: -6.76 Total: 6.57 kcal Atomic # 6 Polarization: 5.43 SS G_CDS: -0.45 Total: 4.98 kcal Atomic # 7 Polarization: -40.56 SS G_CDS: 0.33 Total: -40.23 kcal Atomic # 8 Polarization: -33.61 SS G_CDS: -0.62 Total: -34.23 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.17 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -35.21 -7.33 -42.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890957913.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.495 kcal (2) G-P(sol) polarization free energy of solvation -35.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.21 seconds